Metagenome Family F097872

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097872
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	43 residues
Representative Sequence	MSAFDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNR
Number of Associated Samples	82
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	64.42 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.23 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.846 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (13.462 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.038 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.88% β-sheet: 0.00% Coil/Unstructured: 94.12%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04392	ABC_sub_bind	24.04
PF02371	Transposase_20	12.50
PF01548	DEDD_Tnp_IS110	2.88
PF03401	TctC	1.92
PF06742	DUF1214	1.92
PF02518	HATPase_c	1.92
PF02353	CMAS	1.92
PF00271	Helicase_C	0.96
PF00300	His_Phos_1	0.96
PF00589	Phage_integrase	0.96
PF05988	DUF899	0.96
PF12951	PATR	0.96
PF00999	Na_H_Exchanger	0.96
PF13683	rve_3	0.96
PF13374	TPR_10	0.96
PF07883	Cupin_2	0.96
PF02558	ApbA	0.96
PF00884	Sulfatase	0.96
PF03641	Lysine_decarbox	0.96
PF12833	HTH_18	0.96
PF07045	DUF1330	0.96
PF00596	Aldolase_II	0.96
PF00486	Trans_reg_C	0.96
PF02040	ArsB	0.96
PF01220	DHquinase_II	0.96
PF13474	SnoaL_3	0.96
PF01734	Patatin	0.96
PF11752	DUF3309	0.96
PF00873	ACR_tran	0.96
PF13458	Peripla_BP_6	0.96
PF17200	sCache_2	0.96
PF00072	Response_reg	0.96
PF08238	Sel1	0.96
PF01925	TauE	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	24.04
COG3547	Transposase	Mobilome: prophages, transposons [X]	15.38
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	1.92
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.92
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.92
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	1.92
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	1.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.92
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.96
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.96
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.96
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.96
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.96
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.96
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.96
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.96
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.96
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.96
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	0.96
COG0757	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.96
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.96
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.96
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.81 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %
Unclassified	root	N/A	21.15 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.50 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.96 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.69 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.96 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Bradyrhizobium guangxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	2.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.92 %
Methylobacterium phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium phyllosphaerae	0.96 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Bradyrhizobium guangxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	2.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.96 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.96 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.96 %
Methylobacterium phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium phyllosphaerae	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1016225	All Organisms → cellular organisms → Bacteria → Proteobacteria	1416	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1040218	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10024748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1426	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1010471	All Organisms → cellular organisms → Bacteria → Proteobacteria	972	Open in IMG/M
3300004092\|Ga0062389_102795049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300005172\|Ga0066683_10258736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1079	Open in IMG/M
3300005332\|Ga0066388_101183800	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300005332\|Ga0066388_104611879	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005332\|Ga0066388_108031923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	527	Open in IMG/M
3300005434\|Ga0070709_10305821	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300005436\|Ga0070713_100359554	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300005471\|Ga0070698_101364143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	659	Open in IMG/M
3300005518\|Ga0070699_100881339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	819	Open in IMG/M
3300005536\|Ga0070697_100862302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	802	Open in IMG/M
3300005536\|Ga0070697_101979820	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300005556\|Ga0066707_10492549	Not Available	795	Open in IMG/M
3300005764\|Ga0066903_101572669	Not Available	1245	Open in IMG/M
3300005764\|Ga0066903_102244699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300005764\|Ga0066903_102648857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300005764\|Ga0066903_102671127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	968	Open in IMG/M
3300005764\|Ga0066903_103172705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300005764\|Ga0066903_104972045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300005764\|Ga0066903_105025577	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005764\|Ga0066903_105204381	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300005764\|Ga0066903_108026305	Not Available	541	Open in IMG/M
3300005764\|Ga0066903_108206359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	534	Open in IMG/M
3300005764\|Ga0066903_108525055	Not Available	522	Open in IMG/M
3300006028\|Ga0070717_10064287	All Organisms → cellular organisms → Bacteria → Proteobacteria	3047	Open in IMG/M
3300006028\|Ga0070717_10187572	Not Available	1805	Open in IMG/M
3300006031\|Ga0066651_10125252	Not Available	1324	Open in IMG/M
3300006046\|Ga0066652_100040622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3426	Open in IMG/M
3300006173\|Ga0070716_101521533	Not Available	547	Open in IMG/M
3300006175\|Ga0070712_101209040	Not Available	657	Open in IMG/M
3300006175\|Ga0070712_101288752	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300006354\|Ga0075021_10600429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300006755\|Ga0079222_10861235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	752	Open in IMG/M
3300006852\|Ga0075433_10999859	Not Available	728	Open in IMG/M
3300006854\|Ga0075425_100707890	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300006871\|Ga0075434_100568332	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300006904\|Ga0075424_100230003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1970	Open in IMG/M
3300006914\|Ga0075436_101261177	Not Available	559	Open in IMG/M
3300007076\|Ga0075435_101423857	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300009148\|Ga0105243_11864669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	633	Open in IMG/M
3300009153\|Ga0105094_10646139	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300009524\|Ga0116225_1243391	Not Available	808	Open in IMG/M
3300009644\|Ga0116121_1179040	All Organisms → cellular organisms → Bacteria → Proteobacteria	672	Open in IMG/M
3300010043\|Ga0126380_10554691	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300010046\|Ga0126384_11108164	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300010046\|Ga0126384_11373346	Not Available	658	Open in IMG/M
3300010361\|Ga0126378_13005149	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300010379\|Ga0136449_100281195	All Organisms → cellular organisms → Bacteria	3055	Open in IMG/M
3300010398\|Ga0126383_12764380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	573	Open in IMG/M
3300011119\|Ga0105246_10478200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1053	Open in IMG/M
3300012198\|Ga0137364_10624806	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300012204\|Ga0137374_10270532	All Organisms → cellular organisms → Bacteria → Proteobacteria	1411	Open in IMG/M
3300012211\|Ga0137377_10799265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium phyllosphaerae	876	Open in IMG/M
3300012355\|Ga0137369_10625569	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300012923\|Ga0137359_10276884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1496	Open in IMG/M
3300012923\|Ga0137359_11378910	Not Available	593	Open in IMG/M
3300012923\|Ga0137359_11793941	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012971\|Ga0126369_11107818	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300016270\|Ga0182036_10566298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300016341\|Ga0182035_10461492	Not Available	1079	Open in IMG/M
3300016341\|Ga0182035_11903459	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300016371\|Ga0182034_10392804	Not Available	1136	Open in IMG/M
3300016371\|Ga0182034_11318192	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300016422\|Ga0182039_10542866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1009	Open in IMG/M
3300016422\|Ga0182039_10865483	Not Available	805	Open in IMG/M
3300017961\|Ga0187778_11357565	Not Available	502	Open in IMG/M
3300017974\|Ga0187777_10050945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2665	Open in IMG/M
3300018023\|Ga0187889_10255526	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300018024\|Ga0187881_10410040	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300018072\|Ga0184635_10082174	All Organisms → cellular organisms → Bacteria → Proteobacteria	1265	Open in IMG/M
3300018089\|Ga0187774_10784790	Not Available	641	Open in IMG/M
3300019082\|Ga0187852_1042698	All Organisms → cellular organisms → Bacteria → Proteobacteria	2139	Open in IMG/M
3300019875\|Ga0193701_1024165	All Organisms → cellular organisms → Bacteria → Proteobacteria	1246	Open in IMG/M
3300020140\|Ga0179590_1152525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	632	Open in IMG/M
3300021474\|Ga0210390_10032574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4255	Open in IMG/M
3300021560\|Ga0126371_13275955	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300025498\|Ga0208819_1018711	All Organisms → cellular organisms → Bacteria → Proteobacteria	1949	Open in IMG/M
3300025878\|Ga0209584_10267488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300025928\|Ga0207700_11038296	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300025985\|Ga0210117_1099277	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300026307\|Ga0209469_1097940	Not Available	819	Open in IMG/M
3300026490\|Ga0257153_1013623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1640	Open in IMG/M
3300027873\|Ga0209814_10486574	Not Available	546	Open in IMG/M
3300031546\|Ga0318538_10204967	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300031573\|Ga0310915_10264691	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300031679\|Ga0318561_10333124	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300031681\|Ga0318572_10261038	All Organisms → cellular organisms → Bacteria → Proteobacteria	1020	Open in IMG/M
3300031713\|Ga0318496_10324436	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300031744\|Ga0306918_10942398	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300031781\|Ga0318547_10244257	All Organisms → cellular organisms → Bacteria → Proteobacteria	1081	Open in IMG/M
3300031835\|Ga0318517_10267293	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300031859\|Ga0318527_10316710	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300031890\|Ga0306925_11049210	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300031910\|Ga0306923_11025832	Not Available	894	Open in IMG/M
3300032043\|Ga0318556_10102115	All Organisms → cellular organisms → Bacteria → Proteobacteria	1452	Open in IMG/M
3300032044\|Ga0318558_10056528	All Organisms → cellular organisms → Bacteria → Proteobacteria	1750	Open in IMG/M
3300032051\|Ga0318532_10089428	All Organisms → cellular organisms → Bacteria → Proteobacteria	1081	Open in IMG/M
3300032064\|Ga0318510_10067869	All Organisms → cellular organisms → Bacteria → Proteobacteria	1301	Open in IMG/M
3300032180\|Ga0307471_104042003	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300032205\|Ga0307472_100976058	Not Available	791	Open in IMG/M
3300032261\|Ga0306920_101065090	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.35%
Host-Associated	Host-Associated	8.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.73%
Aquatic	Environmental → Aquatic	9.62%
Plants	Host-Associated → Plants	8.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.65%
Freshwater	Environmental → Aquatic → Freshwater	6.73%
Sediment	Environmental → Aquatic → Sediment	1.92%
Marine	Environmental → Aquatic → Marine	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.85%
Loam	Environmental → Terrestrial → Soil → Loam	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025498	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10162253	3300000655	Forest Soil	LHMSAFDAVDGSSMGTRVPLMWGLLRLPRFGGAKHANGYDNRF*
AF_2010_repII_A100DRAFT_10402181	3300000655	Forest Soil	AAFDAVDGSSTGTRVPSMWALLKIPRFEGATHANDRDDWS*
AF_2010_repII_A001DRAFT_100247481	3300000793	Forest Soil	FAAVHESAFDAVDGSSMGTRVPLMWGLLRLPRFGGAKHANGYDNRF*
AF_2010_repII_A10DRAFT_10104712	3300000816	Forest Soil	LSDGFFAALHMSAFDAVDGSSMGTRVPLMWGLLRLPRFGGAKHANGYDNRF*
Ga0062389_1027950491	3300004092	Bog Forest Soil	MSAIDAVDGSSTGTRVPWIWGLLSAPRFRGESYANGYNSR
Ga0066683_102587364	3300005172	Soil	MPAHESAVDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDN
Ga0066388_1011838001	3300005332	Tropical Forest Soil	VRFAAVRKSAFDAVDGSSTGTEVPSMWALLRLPRFGGANHAD
Ga0066388_1046118791	3300005332	Tropical Forest Soil	VTELPRDRLFAAVRKSAFDAVDGSSTGTEVPSMWALLRLPRFGGANHAD
Ga0066388_1080319232	3300005332	Tropical Forest Soil	MLHLLTSAFDAVDGSSTGTRVPSTWSLLRLPRFGGAKHASGHN
Ga0070709_103058212	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSALDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNRSRH
Ga0070713_1003595543	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSALDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNR
Ga0070698_1013641431	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VQFAALHMSAIDAVDGSSTGTEVPSMWALLRLPRFGGANHADGHDNR
Ga0070699_1008813392	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VQFAALHMSAIDAVDGSSTGTEVPSMWALLRLPRFGGANHADGHDN
Ga0070697_1008623022	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VQFAALHMSAIDAVDGSSTGTEVPSMWALLRLPRFGGANHADGH
Ga0070697_1019798201	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSANDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDNW
Ga0066707_104925493	3300005556	Soil	MTAFDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDNWS
Ga0066903_1015726691	3300005764	Tropical Forest Soil	LLHLLRSGIDAVDGSSTGTRVPWMWGLLRLPRFGGAIHANGYDDRSR
Ga0066903_1022446991	3300005764	Tropical Forest Soil	MLFAAVHESAFDAVDGSSTGTRVPLMWGLLRLPRFGGAKHANGYDNR
Ga0066903_1026488571	3300005764	Tropical Forest Soil	MSAFDAVDGSSTGTEVPWMWVLLRPPRFGGAKHASGH
Ga0066903_1026711271	3300005764	Tropical Forest Soil	VIYIAMTAHDAVDGSSTGTRVPWMWGLIKLPRFGGATHANHYDNRS
Ga0066903_1031727054	3300005764	Tropical Forest Soil	MCFAAVRKSGFDAVDGFSTGTEVPWMWVLLRPLRLGGAKYAN
Ga0066903_1049720451	3300005764	Tropical Forest Soil	VHESGFDAVDGSSTGTEVPWMWVLLRPLRLGGAKYAN
Ga0066903_1050255772	3300005764	Tropical Forest Soil	MTFLTSVNDAVDGSSTGTRVPKMWALLTLPRFGGAKHANGYDNRSR
Ga0066903_1052043811	3300005764	Tropical Forest Soil	MSAFDAVDGSSTGTRVPWMWGLLEAPTIGGAIYANGYDD
Ga0066903_1080263052	3300005764	Tropical Forest Soil	MSAIDAVDGSSTGTEVPWMWVLLRPPRFGGAKMQTITTVG
Ga0066903_1082063592	3300005764	Tropical Forest Soil	VRASFAAVHESAFDAVDGSSTGTEVPWMWVLLRPPRFGGAKHASGH
Ga0066903_1085250551	3300005764	Tropical Forest Soil	MSVIDAVDGSSTGTRVPKMWALLTLPRFGGAKHANGYDNRSRH
Ga0070717_100642874	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFAFDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHD
Ga0070717_101875722	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSAFDAVDGSSTGTEVPCMWVLLRPPRFGGAKHAS
Ga0066651_101252522	3300006031	Soil	MSESDAVDGSCTGTEVPCMWVLLRAPRFGGAKHASGHDNRSRH
Ga0066652_1000406228	3300006046	Soil	MSESDAVDGSCTGTEVPCMWVLLRAPRFGGAKHASGHDNRSRHCKKTDTNE
Ga0070716_1015215332	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRMSAFDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNR
Ga0070712_1012090401	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRMSTFDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNRSR
Ga0070712_1012887522	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFAAVHWAALDAVDGSSTGTEVPCMWVLLRPPRFG
Ga0075021_106004292	3300006354	Watersheds	MLFAAVHMSAPDAVDGSSTGTRVPKKWALLRLPRFGGASHANGFD
Ga0079222_108612352	3300006755	Agricultural Soil	LLHLLTSAVDAVDGSSTGTEVPWLWVLLRPPRFGGAK
Ga0075433_109998593	3300006852	Populus Rhizosphere	MSAFDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNR
Ga0075425_1007078901	3300006854	Populus Rhizosphere	LLHLLMAAFDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDNWSR
Ga0075434_1005683321	3300006871	Populus Rhizosphere	LLHLLMAAFDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDNW
Ga0075424_1002300033	3300006904	Populus Rhizosphere	LLRLLTAASDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNRS
Ga0075436_1012611772	3300006914	Populus Rhizosphere	LAVCFLLSARDAVDGSSTGTEVPWMWVLLRPPRFGGAT
Ga0075435_1014238571	3300007076	Populus Rhizosphere	MFAAVHWAALDAVDGSSTGTEVPCMWVLLRPPRFGGAKHASGHDNR
Ga0105243_118646691	3300009148	Miscanthus Rhizosphere	MATPFAALRESVLDAVDGSSTGTSVPWMWGLLRLPRFRGASHAD
Ga0105094_106461393	3300009153	Freshwater Sediment	MSVSDAVDGSSTGTGVPLMWVLLELPRFGGAKHASGYNHRSRHREVGVS
Ga0116225_12433911	3300009524	Peatlands Soil	MIGLFAAVHESVSDAVDGSSTGTRVPKMGAPIRLPRFGGASHAS
Ga0116121_11790401	3300009644	Peatland	MIGLFAAVHESVSDAVDGSSTGTRVPKMGAPIRLPRFGGASHASCHDN
Ga0126380_105546911	3300010043	Tropical Forest Soil	MRMSASDAVDGSSTGTEVPLKWVLLRPPRFGGAKHASGHDNRSRY
Ga0126384_111081641	3300010046	Tropical Forest Soil	MSAFDAVDGSSTGTEVPWMWVLLRPPRFGGAKHASGHDNWS
Ga0126384_113733462	3300010046	Tropical Forest Soil	VRASFAAVHESAFDAVDGSSTGTEVPWMWVLLRPPRFGGAKHASGHDNWS
Ga0126378_130051491	3300010361	Tropical Forest Soil	MFLLQRRMSAFDAVDGSSTGTRVPSTWSLLRLPRFGGAKHASGHNN
Ga0136449_1002811954	3300010379	Peatlands Soil	MLFAAVHMSAPDAVDGSSTGTRVPKKWALLRLPRFGGASHANGFDHWSRHR
Ga0126383_127643801	3300010398	Tropical Forest Soil	MRMSAFDAVDGSSTGTEVPWMWVLLKPPRFGGAKYANCHDNRSRYREVG
Ga0105246_104782002	3300011119	Miscanthus Rhizosphere	MFAIDAVDGSSTGTQVPWMWVLLMLPRFGGANHANGHNHRSR
Ga0137364_106248062	3300012198	Vadose Zone Soil	MADHTDAGPLFAAVHESGSDAVDGSSTGTRVPRMWALLRLPRFKGAIHADDHDNR
Ga0137374_102705324	3300012204	Vadose Zone Soil	MKRHFAAAHESANDAVDGSSTGTEVPWMWVLLRPPRFGGA
Ga0137377_107992652	3300012211	Vadose Zone Soil	MSAPDAVDGSSTGAEVPWMWVLLRPPRFGGAKYANDQDNRSRYREVDFS
Ga0137369_106255691	3300012355	Vadose Zone Soil	MTAFDAVDGSSTGTEVPWMWVLLRPPRFGGAKHASGHDNWS
Ga0137359_102768841	3300012923	Vadose Zone Soil	MTMLFAAVHESACDAVDGSSTGTRVPRMWALLRLPRFRGATHADGHDNRF
Ga0137359_113789102	3300012923	Vadose Zone Soil	MSANLEVKRTTAFDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDNRSRYR
Ga0137359_117939412	3300012923	Vadose Zone Soil	MQFAAVHESVPDAVDGSSTGTRVPRMWALLRLPRFRGASHADDH
Ga0126369_111078183	3300012971	Tropical Forest Soil	MSAFDAVDGSSTGTEVPWMWVLLRPPRFGGAKHASGHDDRS
Ga0182036_105662981	3300016270	Soil	LLRLLTAAFDAVDGSSTGTEVPWMWVLLRPPRFGGSKHASGHDDRS
Ga0182035_104614921	3300016341	Soil	MLTTRAGIFAVHKSAFDAVDGSSTGTEVPWMWVLLRPPRFGGSKHASGHDDR
Ga0182035_119034591	3300016341	Soil	MIFAALHESAFDAVDGSSTGTEVPWMWVLLRPPRFGGSKHASGHDDR
Ga0182034_103928042	3300016371	Soil	MLFAAAHQSGFDAVDGSSTGTEVPWMWVLLRPPRFGGA
Ga0182034_113181921	3300016371	Soil	MIFAALHESAFDAVDGSSTGTEVPWMWVLLRPPRFGGSKHASGHDDRS
Ga0182039_105428662	3300016422	Soil	VHFAAVHMSAFDAVDGSSTGTEVPWMWVLLRPPRFGGSKHASG
Ga0182039_108654832	3300016422	Soil	MLFAAAHQSGFDAVDGSSTGTEVPWMWVLLRPPRFGG
Ga0187778_113575651	3300017961	Tropical Peatland	MSAIDAVDGSSTGTQVPLMWVLLRPPQFGGAKYAIDHDRRFRY
Ga0187777_100509458	3300017974	Tropical Peatland	LIENQPMSAIDAVDGSSTGTQVPLMWVLLRPPQFGGAKYAIDHD
Ga0187889_102555262	3300018023	Peatland	MIGLFAAVHESVSDAVDGSSTGTRVPKMGAPIRLPRFGGASHASCHD
Ga0187881_104100401	3300018024	Peatland	MIGLFAAVHESVSDAVDGSSTGTRVPKMGAPIRLPRFGGASH
Ga0184635_100821742	3300018072	Groundwater Sediment	EFDAVDGSSTGTRVPQLWEQLRLPRFGGAIHANGYDNRS
Ga0187774_107847902	3300018089	Tropical Peatland	MVMSVLDAVDGSSTGTQVPLMWVLLRPPQFGGAKYAIDHDR
Ga0187852_10426981	3300019082	Peatland	MQETAFDAVDGSSTGTRVPKMGAPIRLPRFGGASHASCHDNR
Ga0193701_10241651	3300019875	Soil	ECDAVDGSSTGTRVPQLWEQLRLPRFGGAIHANGYDNRS
Ga0179590_11525251	3300020140	Vadose Zone Soil	MLVAVHESAFDAVDGSSTGTRVPRMWALLRLPRFRGASHADD
Ga0210390_100325749	3300021474	Soil	MSAFDAVDGSSTGTRVPRMWELLRLPRFRGVSHANQRSEPCK
Ga0126371_132759551	3300021560	Tropical Forest Soil	MRKSAFDAVDGSSTGTAVPWMWVLLRPPRFGGAKHA
Ga0208819_10187111	3300025498	Peatland	MIGLFAAVHESVSDAVDGSSTGTRVPKMGAPIRLPRFGGASHASC
Ga0209584_102674881	3300025878	Arctic Peat Soil	MLFAAVHESVVDAVDGSSTGTSVPWMWALLRLPRFRGASHADD
Ga0207700_110382961	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRAALLRLLTAAFDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDNRSRY
Ga0210117_10992771	3300025985	Natural And Restored Wetlands	MSTFDAVDGSSTGTQVPWMWVLLMLPRFGGANHASDYHNRFRHSEVGV
Ga0209469_10979402	3300026307	Soil	MPGFDAVDGSSTGTEVPWMWVLLRPPRFGGATHASGHDNWSRYRQ
Ga0257153_10136231	3300026490	Soil	MTMLFAAVHESGCDAVDGSSTGTRVPRMRALIRPPRFGGGNYASDYDNRSGYSQ
Ga0209814_104865741	3300027873	Populus Rhizosphere	LAVCFLLSARDAVDGSSTGTEVPWMWVLLRPPRFGGA
Ga0318538_102049671	3300031546	Soil	AALHMSAFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHANGYDNRF
Ga0310915_102646912	3300031573	Soil	MLFAAAHQSGFDAVDGSSTGTEVPWMWVLLRPPRFGGATHASDYDD
Ga0318561_103331241	3300031679	Soil	VDGSFTGTRVPSTWSLLKLPRFGGAKHASGHNNRF
Ga0318572_102610382	3300031681	Soil	HMSAFDAVDGSSTGTRVPLMWGLLRLPRFGGAKHANGYDNRF
Ga0318496_103244361	3300031713	Soil	MSAFDAVDGSSTGTEVPWMWVLLKPPRFGGAKYANCHD
Ga0306918_109423981	3300031744	Soil	MSAFDAVDGSSTGTQVPWMWVLLKAPRFEGANHANDH
Ga0318547_102442571	3300031781	Soil	AAPHMSAFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHANGYDNRF
Ga0318517_102672932	3300031835	Soil	HMSTFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHAKGYDNRF
Ga0318527_103167102	3300031859	Soil	AFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHAKGYDNRF
Ga0306925_110492101	3300031890	Soil	MIFAALHESAFDAVDGSSTGTEVPWMWVLLRPPRFGGSKHA
Ga0306923_110258322	3300031910	Soil	MLFAAAHQSGFDAVDGSSTGTEVPWMWVLLRPPRFGGAT
Ga0318556_101021152	3300032043	Soil	SRIAAVHMSTFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHANGYDNRF
Ga0318558_100565281	3300032044	Soil	KIAAPHMSAFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHAKGYDNRF
Ga0318532_100894282	3300032051	Soil	AAPHMSAFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHAKGYDNRF
Ga0318510_100678692	3300032064	Soil	SNNDKIAAPHMSAFDAVDGSSTGTRVPLMWGLLRLPRFGGDKHANGYDNRF
Ga0307471_1040420031	3300032180	Hardwood Forest Soil	MSAPDAVDGSSTGTEVPSMWALLRLPRFGGANHADGHDNRPRHRK
Ga0307472_1009760583	3300032205	Hardwood Forest Soil	MKLFAAVHESGFDAVDGSSTGTEVPWMWVLLRPPRFRGAKHASGHDNRSRHRK
Ga0306920_1010650902	3300032261	Soil	MIFAALHESAFDAVDGSSTGTEVPWMWVLLRPPRFGGSKHASGHDDRSRYR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097872

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences