 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F097865 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 104 |
| Average Sequence Length | 67 residues |
| Representative Sequence | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSMHANWELLGHRLWWIWLIVAAPYVLLSATLLFGL |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 104 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 75.00 % |
| % of genes near scaffold ends (potentially truncated) | 3.85 % |
| % of genes from short scaffolds (< 2000 bps) | 3.85 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.60 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (31.731 % of family members) |
| Environment Ontology (ENVO) | Unclassified (42.308 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (43.269 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.14% β-sheet: 4.08% Coil/Unstructured: 38.78% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.60 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 104 Family Scaffolds |
|---|---|---|
| PF12680 | SnoaL_2 | 17.31 |
| PF00903 | Glyoxalase | 5.77 |
| PF12002 | MgsA_C | 4.81 |
| PF13561 | adh_short_C2 | 2.88 |
| PF16193 | AAA_assoc_2 | 2.88 |
| PF08669 | GCV_T_C | 1.92 |
| PF00664 | ABC_membrane | 0.96 |
| PF01614 | IclR | 0.96 |
| PF02608 | Bmp | 0.96 |
| PF02894 | GFO_IDH_MocA_C | 0.96 |
| PF10604 | Polyketide_cyc2 | 0.96 |
| PF00166 | Cpn10 | 0.96 |
| PF12681 | Glyoxalase_2 | 0.96 |
| PF03301 | Trp_dioxygenase | 0.96 |
| PF00528 | BPD_transp_1 | 0.96 |
| PF06983 | 3-dmu-9_3-mt | 0.96 |
| COG ID | Name | Functional Category | % Frequency in 104 Family Scaffolds |
|---|---|---|---|
| COG0234 | Co-chaperonin GroES (HSP10) | Posttranslational modification, protein turnover, chaperones [O] | 0.96 |
| COG0673 | Predicted dehydrogenase | General function prediction only [R] | 0.96 |
| COG1414 | DNA-binding transcriptional regulator, IclR family | Transcription [K] | 0.96 |
| COG1744 | Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN | Signal transduction mechanisms [T] | 0.96 |
| COG2764 | Zn-dependent glyoxalase, PhnB family | Energy production and conversion [C] | 0.96 |
| COG3483 | Tryptophan 2,3-dioxygenase (vermilion) | Amino acid transport and metabolism [E] | 0.96 |
| COG3865 | Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase | General function prediction only [R] | 0.96 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300004479|Ga0062595_100921595 | Not Available | 739 | Open in IMG/M |
| 3300005536|Ga0070697_101684742 | Not Available | 567 | Open in IMG/M |
| 3300010866|Ga0126344_1352259 | Not Available | 619 | Open in IMG/M |
| 3300031199|Ga0307495_10193995 | Not Available | 554 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 31.73% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 16.35% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.77% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 4.81% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 3.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 2.88% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.92% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 1.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.92% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 1.92% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.96% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.96% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.96% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.96% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.96% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.96% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.96% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.96% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.96% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 0.96% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.96% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.96% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.96% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.96% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001536 | Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina | Environmental | Open in IMG/M |
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005172 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 | Environmental | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005529 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
| 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010866 | Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012001 | Permafrost microbial communities from Nunavut, Canada - A24_80cm_12M | Environmental | Open in IMG/M |
| 3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
| 3300012204 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012353 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012358 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012582 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG | Environmental | Open in IMG/M |
| 3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Host-Associated | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300013763 | Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M | Environmental | Open in IMG/M |
| 3300013768 | Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M | Environmental | Open in IMG/M |
| 3300014157 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300018054 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1 | Environmental | Open in IMG/M |
| 3300019867 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1 | Environmental | Open in IMG/M |
| 3300019869 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2 | Environmental | Open in IMG/M |
| 3300019886 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2 | Environmental | Open in IMG/M |
| 3300019999 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1 | Environmental | Open in IMG/M |
| 3300020001 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2 | Environmental | Open in IMG/M |
| 3300020002 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1 | Environmental | Open in IMG/M |
| 3300020016 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1 | Environmental | Open in IMG/M |
| 3300021080 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo | Environmental | Open in IMG/M |
| 3300021344 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2 | Environmental | Open in IMG/M |
| 3300021510 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex | Environmental | Open in IMG/M |
| 3300025888 | Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes) | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes) | Environmental | Open in IMG/M |
| 3300026331 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes) | Environmental | Open in IMG/M |
| 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028708 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152 | Environmental | Open in IMG/M |
| 3300028710 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380 | Environmental | Open in IMG/M |
| 3300028713 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184 | Environmental | Open in IMG/M |
| 3300028722 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368 | Environmental | Open in IMG/M |
| 3300028754 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157 | Environmental | Open in IMG/M |
| 3300028784 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 | Environmental | Open in IMG/M |
| 3300028791 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144 | Environmental | Open in IMG/M |
| 3300028796 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141 | Environmental | Open in IMG/M |
| 3300028799 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123 | Environmental | Open in IMG/M |
| 3300028807 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186 | Environmental | Open in IMG/M |
| 3300028810 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300028824 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 | Environmental | Open in IMG/M |
| 3300028828 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 | Environmental | Open in IMG/M |
| 3300028878 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 | Environmental | Open in IMG/M |
| 3300028881 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116 | Environmental | Open in IMG/M |
| 3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033812 | Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| A1565W1_105035631 | 3300001536 | Permafrost | MADATTPTEEAALPPDPDRLETAVREARDDAAPFALAAAGILIALALVSRHAHWDLLGYRLWWVWLLVAAPYVCLSATLLLG |
| A1565W1_111077041 | 3300001536 | Permafrost | VREARDDAAPFALAATGVLVLLAFVSRHAHWDLLAHRLWWIWLLVAFPYGCLSATLLF |
| C688J18823_102133161 | 3300001686 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSMHADWKLLGHQLWWMWLVVAA |
| C688J35102_1200120594 | 3300002568 | Soil | MADPDRLHTAAREARDDAAPFALGAAGILIVLALVSMHANWKLLGHQLWWMWLVVAAPYLLLF |
| Ga0062593_1018994271 | 3300004114 | Soil | VASHDPNLLRKAVKEARDDAAPFALAAAVILIGLAFVGWHANWDLLGHRLWWIWLVVAAPYVLLSATLLFGLG |
| Ga0062595_1009215952 | 3300004479 | Soil | MDDPPDARRLHAAVREAQNDAAPFALAAAAMLIALAVVSKHADWQLLGNGLWWMW |
| Ga0066683_102813421 | 3300005172 | Soil | VASPDPARLRAAVREARDDAAPFALAAAVILIALALVSMHAHWELLG |
| Ga0070683_1010593371 | 3300005329 | Corn Rhizosphere | MPDTADRAQANPDSTRLMEAAREARDDAAPSALTAAGALVLLALVGRHAGWELLGHQLWWIWVVVAFPY |
| Ga0068869_1021620061 | 3300005334 | Miscanthus Rhizosphere | VREARDDAAPFALAAAGILVALALVSMRRNWELLGRELWWVWLVAAVPYVLLSVTLL |
| Ga0068868_1006949294 | 3300005338 | Miscanthus Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHRLWWIWLIVAAPYVLLSA |
| Ga0070667_1014256672 | 3300005367 | Switchgrass Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHQLWWMWLIVAAPY |
| Ga0070699_1008395034 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHQLWWMWLIVAAPYVLLWATL |
| Ga0073909_105971682 | 3300005526 | Surface Soil | MADPDRLHAAAREARDDAAPFALGASVILVVLALVSMQANWELLGHQLWWIWLIVAAPYLLLSATLLFGL |
| Ga0070741_106093783 | 3300005529 | Surface Soil | MAQAPDPMRLHAAVREARDDAAPFSLVAAALLVALALVGRHAHWKLLGH |
| Ga0070697_1003696571 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MDETTAPTGQAAAQLDVDRLAAAVRDARDDAAPFALAAAVILVALGIVSMHAHWDLLGHRLWWLWLVVAVPYLLLSGTLLLGLGRLIR |
| Ga0070697_1016847422 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | VREARDDAAPFALAAAGILVLLALVSMPAKWELLGHRLWWIWLVPAAPYVLLSATLLFGLGRLTVH |
| Ga0070704_1009264691 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | MATGIEPADAAAGSHDPNRLQAAAREARDDAAPFVLAAAGILTVLALVSRHAHWDLLGHRLWWMWLLVAAP |
| Ga0068858_1009359054 | 3300005842 | Switchgrass Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHRLWWIWLIVAAPYVLLSATLLFGLGRLL |
| Ga0070716_1017452891 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MSEATGRAATASPSPEPDRLDTAVREARDDAAPFALVAAAILIALALVAKHAHWETLGRSLWWMWLIVAAPYLCLAATLLLG |
| Ga0074056_118151701 | 3300006574 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSLNANWELLGHQLWWMWLIVAAPYVLLSATLLFGLGRLLRHD |
| Ga0099828_118195532 | 3300009089 | Vadose Zone Soil | MVDPDRLHAAAREARDDASPFALGAAGILIVLALVSMHAHWDLLGYRLWWMWLIVAAPYLLLSAIFQFGLKRLVR |
| Ga0099827_107337811 | 3300009090 | Vadose Zone Soil | MAKGTEPLEAAAVSPDPDRLLAAAREARDDAAPFALAAAGILTGLALVSRHAHWDLLGHRLWWMWLLVAA |
| Ga0105247_115390252 | 3300009101 | Switchgrass Rhizosphere | MPDMAEPAQANPDPARLLQAAREARDDAAPFALGAAGALVLLALVGWHACWELLDASLWWIWLVVAFPYL |
| Ga0114129_122503182 | 3300009147 | Populus Rhizosphere | LYAAAREARDDAAPFALVAAGVLILLALVSRHAHWEVVGHRLWWLWLVVA |
| Ga0105242_118424863 | 3300009176 | Miscanthus Rhizosphere | MADPDRLHAAAREARDDAAPFALGAAVILVVLALVSMQANWELLGRQLWWIWLIVAAPYALLFATLLFVATLPGFGAVFLRVYEN |
| Ga0105239_118254312 | 3300010375 | Corn Rhizosphere | MFPFWSWMARGIEPADAAAGSHDPNRLQTAAREARDDAAPFALTAAAILTILALVSRHAHWDLLGHRLWWMWLVVAAPYIFLSA |
| Ga0134127_126359963 | 3300010399 | Terrestrial Soil | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHQLWWMWL |
| Ga0134122_101297271 | 3300010400 | Terrestrial Soil | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGH |
| Ga0134121_103193535 | 3300010401 | Terrestrial Soil | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHQLWWMWLIVAAPYVLLWAT |
| Ga0134121_126513701 | 3300010401 | Terrestrial Soil | MADPDRLHAAAREARDDAAPFALGAAVILVVLALVSMQANWELLGRELWWIWL |
| Ga0126344_13522591 | 3300010866 | Boreal Forest Soil | MAEAPDPKRLHAAVREARDDAAPFALGAAALLISLGGVGMHARWRLLGHDSWWMWFAL |
| Ga0137393_117647521 | 3300011271 | Vadose Zone Soil | VREARDDAAPFALVAAGVLAVLALVSRHAHWELLGHRLWWLWLLVAVPYGCLSATLLLGLGRLVEHDRRREIV |
| Ga0120167_10510583 | 3300012001 | Permafrost | VASADPDRLRTAVREAREDAAPFALAAAALLVALALVSMQAHWELLGHRLWWICFIAAAPYV |
| Ga0137399_103275672 | 3300012203 | Vadose Zone Soil | MDETTAPPEQAAAQLDLDRLAEAVRDARDDAAPFALAAAVILIALGIVSMHAHWDLLGHRLWWMWLVVAVPYLLLSGTLVLGLGR |
| Ga0137374_100295601 | 3300012204 | Vadose Zone Soil | VAEAIANGDRLHAAVREARDDAAPFALVAGGLLVALALVSRHAHWELLGHRLWWIWLGGAAPYVFLSATLLLGLGM |
| Ga0137376_110541701 | 3300012208 | Vadose Zone Soil | VASADRDRLHAAVREARDDASPFALAAAGILVALGLVSMQAHWE |
| Ga0137379_109049322 | 3300012209 | Vadose Zone Soil | MAEAAEPNRLRAAVREARDDAAPFALAAAAILVLLALASKHAHWEFLGRRLW |
| Ga0137379_111357061 | 3300012209 | Vadose Zone Soil | MAATSAPTTAAPDPDRLAEAVREARNDAAPFALTAAGILVALALVSRHAHWALLGRQLWWIWLLVAAPYVCLSATLLFGLG |
| Ga0137377_102170093 | 3300012211 | Vadose Zone Soil | MVEQTAPAEQTAVPLDPERLAEAARDARDDAAPFALAAAGILVALALVSMHAHWDLLGHRLWWMWLVVAGPYVLLSG |
| Ga0137377_114084852 | 3300012211 | Vadose Zone Soil | MAEAAEPNRLLAAVREARDDAAPFALAAAAILVLLALASKHAHWEFLGRRLWWTW |
| Ga0137387_109848112 | 3300012349 | Vadose Zone Soil | MRHPDPVMDADTARLHAAAREARDDAAPFALVAAAILIALALVSKHADWESLGRPLWWMWLVVA |
| Ga0137367_104146423 | 3300012353 | Vadose Zone Soil | MAKGTEPPDAAAVSPGPDRLLAAAREARDDAAPFALVAAGLLVALALVSRHANWDLLGHRIWWVWLLVAAPYVFLSA |
| Ga0137368_103395601 | 3300012358 | Vadose Zone Soil | VAEAIANGDRLHAAVREARDDAAPFALAAGGLLVALALVSRHAHWELLGHRLWWIWLGG |
| Ga0137358_105725221 | 3300012582 | Vadose Zone Soil | MDETTAPPGEAAAQLDADRLAEAVRDARDDAAPFALAAAVILIALGIVSMHAHWDLLGHRLWWLWLVVAVPYILLSGMLLLGL |
| Ga0137398_104707311 | 3300012683 | Vadose Zone Soil | LDAAVREARDDAAPFALVAAAILIALALVARHAHWETLGRSVWWMWLIVAAPYLLLAATL |
| Ga0137397_113403142 | 3300012685 | Vadose Zone Soil | MAETTSPEKSTDQRRLAAAAREARDDAAPFALVAAGILVGLALVSMHAHWDLFGHRLWWLWLIVAAPYVVLSATLLLGLGRLIR |
| Ga0137394_114634801 | 3300012922 | Vadose Zone Soil | VASADRDRLHAAVREARDDAAPFALAAAAILVALGLVSMQAHWELLGHRLWWIWIVAAAPYVLLSATLLLATGRLAEHDR |
| Ga0164300_107902321 | 3300012951 | Soil | VASHDPNLLRKAVKEARDDAAPFALAAAAILIGLAFVGWHANWDLLGHRLWWIWLVVAVPYVFLSAVLLLGLTRVIRHDRRRE |
| Ga0164304_110434852 | 3300012986 | Soil | VASQDTDRLRIAVREARDDAAPFALAAAGILVALALLSMRANWELLGHKLWWVWLVAAVP |
| Ga0164306_101121611 | 3300012988 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSLQANWELLGHQLWWMWLVVAAPYVLLSATLLFG |
| Ga0157369_116806722 | 3300013105 | Corn Rhizosphere | LDTAVREARDDAAPFALVAAAILIALALVAKHAHWQALGQSLWWTWLIVASPYLCLAATLLLGLNRLVG |
| Ga0163162_118866381 | 3300013306 | Switchgrass Rhizosphere | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSLHANWELLGHRLWWIWLIVAAPYVLLS |
| Ga0157375_117583362 | 3300013308 | Miscanthus Rhizosphere | LRAAAREARDDAAPFALAAAAILITLALVARHANWEALGHSLWWMWLIVAAPYVCLAATQLLGLKRLVRHDHRREIV |
| Ga0120179_10908232 | 3300013763 | Permafrost | MADATTPTEEAALPPDPDRLETAVREARDDAAPFALAAAGILIALALVSRHAHWDLLGYRLWWVWLLVAAPYVCLSAT |
| Ga0120155_10894542 | 3300013768 | Permafrost | MAEATAPADRLNAALRETRDDAAPFALAAAGVLVLLALVSRHAHWELLGHRVWWMWLLVAAPYV |
| Ga0134078_105712611 | 3300014157 | Grasslands Soil | LESAVREARDDAAPFAVVAAGILVALALVSRHAHWDLLGHPLWWLWLVVALPYVCLSGILLFGL |
| Ga0132258_121627851 | 3300015371 | Arabidopsis Rhizosphere | VGDAATQDAADDQERLLAAVREARRDAAPFALASGAALILLAVVSEHAHWRLLGHELWWIWLVVAVPWVCLCAVLFLGLSR |
| Ga0184621_103067621 | 3300018054 | Groundwater Sediment | VPSADQDRLHAAVREARDDASPFALAAAGILVLLALVSMQANWELLGHRLWWIWFIAAAPYVLLSATLLFGLG |
| Ga0193704_10076086 | 3300019867 | Soil | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHANWDLLGHRLWWMWLVVAAPYVLLSATLLF |
| Ga0193705_10068506 | 3300019869 | Soil | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHANWDLLGHRLWWMWLVVAAPYVLLSATLLFGLGRLVRH |
| Ga0193727_10113201 | 3300019886 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSWHANWDLLGRRLWWMWLVV |
| Ga0193718_10296553 | 3300019999 | Soil | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHANWDLLGHRLWWMWLVVAAPYVLLSATLLFGLGRLVRHDRRREI |
| Ga0193731_10660762 | 3300020001 | Soil | MVEPTAPAEQTAVPLDPERLAEAARDARDDAAPFALAAAGILVTLALVSMHAHWDLLGNRLWWMWLVVAGPYVLLSGTLLLGLGR |
| Ga0193730_10490441 | 3300020002 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSWHANWDLLGRRLW |
| Ga0193696_10089509 | 3300020016 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSMHANWELLGHRLWWIWLIVAAPYVLLSATLLFGL |
| Ga0210382_101612191 | 3300021080 | Groundwater Sediment | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHAHWDLLGHRLWWMWLVVAAPYVLLSATLLFGLG |
| Ga0193719_100892384 | 3300021344 | Soil | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHANWELLGHRLWWMWLLVAAPYV |
| Ga0193719_103176952 | 3300021344 | Soil | MVEQTAPAEQTAVPLDPERLAEAARDARDDAAPFALAAAGILVTLALVSMHAHWDLLGNRLWWMWLVVAGPYVLLSGTLLLGLGRLTRHDRR |
| Ga0222621_10529431 | 3300021510 | Groundwater Sediment | MGDPDRLQAAVREARDDAAPFALGAAGILIVLALVSMHANWDLLGHRLWWMWLVVAAPYVLLSATLLF |
| Ga0209540_101193871 | 3300025888 | Arctic Peat Soil | MSESVVPAGTPEAPPDRDRLHTAVREARDDAAPFALGAAAILVALAVVSMIAHWELLGHRLWWVWLLVAAPY |
| Ga0207692_111085661 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MDDPPDARRLHAAVREAQNDAAPFALAAAAMLIALAVVSKHADWQLLGNGLWWMWLVVAVPYVLLSATLL |
| Ga0207688_101074601 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHQLWWMWLI |
| Ga0207671_104255895 | 3300025914 | Corn Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHQLWWMWLIVAAPYVLLWATLLFGL |
| Ga0207649_111222222 | 3300025920 | Corn Rhizosphere | MADAPDAKRLHAAMREARDDAAPFALAAAAILIALAVVSKHADWQLLGHSLWWMWLVVAVPYALLAATLLFGLSRLV |
| Ga0207664_103575651 | 3300025929 | Agricultural Soil | VREARDDAAPFALVAAAILIALALVAKHANWETLGRSLWWMWLIVAAPYLCLAATLLLGLRRLIHHDH |
| Ga0207677_104136405 | 3300026023 | Miscanthus Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHRLW |
| Ga0207703_112066404 | 3300026035 | Switchgrass Rhizosphere | MADPDRLHAAAREARDDASPFALGAAIILIVLALVSLHANWELLGHQLW |
| Ga0209152_104744732 | 3300026325 | Soil | MDGDSSSTEPAAVQPDPNRLRTAAREARNDAAPFALAGAGILVALALVSRHARWDLLGHRLWWLWLVVAAPYA |
| Ga0209267_11962051 | 3300026331 | Soil | MDETTAPPGEAAAQLDADRLAAAVRDARDDAAPFALAAAVILIALGIVSMHAHWDLLGHRFWWLWLVVAVPYLLLSGTLLLGLG |
| Ga0268266_105103573 | 3300028379 | Switchgrass Rhizosphere | MADPDRLHAAAREARDDAAPFALGPAGILIVLALVSLHAN |
| Ga0307295_100284825 | 3300028708 | Soil | MGDPDRLQAAVREARDDAAPFALGAAGILIVLALVSMHANWELLGHRLWWMWLLVAAPYVLLSATLLFGLGRLV |
| Ga0307295_101271061 | 3300028708 | Soil | VPSADQDRLHAAVREARDDASPFALAAAGILVALALVSMQANWELLGHRLWWI |
| Ga0307322_102163992 | 3300028710 | Soil | MGDPDRLQAAVREARDDAAPFALGAAGILIVLALVSMHANWELLGHRLWWMWLLVAAPYVLLSAT |
| Ga0307303_100449833 | 3300028713 | Soil | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHANWELL |
| Ga0307319_101061443 | 3300028722 | Soil | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHANWDLLG |
| Ga0307297_100422796 | 3300028754 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSWHANWDLLGRRLWWIWLIVAAPYVLLSVTLLFGLG |
| Ga0307282_102837512 | 3300028784 | Soil | VPSADQDRLHAAVREARDDAAPFALAAAGILVALALVSMQGNWELLGRRLWWIWLVAAAPYVLLSATLLFGLGRLTVHN |
| Ga0307282_102974872 | 3300028784 | Soil | MDRVRTEVREARDDAAPFALFAAAILVALALVSMHAHWELLGHRLWWIWLLAAAPYVLLS |
| Ga0307290_102169162 | 3300028791 | Soil | VPSADQDRLHAAVREARDDAAPFALAAAGILVALALVSMQGNWELLGRRLWWIWL |
| Ga0307287_103420431 | 3300028796 | Soil | MADPDRLHAAAREARDDAAPFALAAAGILILLALVSMLANWELLGHQLWWMWLIVAAPYVLLFATLLFGFGRL |
| Ga0307284_102398761 | 3300028799 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSMHANWELLGHRLWWIWLIVAAPYVLLSATLLFGLGRLLRH |
| Ga0307305_102382631 | 3300028807 | Soil | MADPDRLHAAAREARDDAAPFALGAAGILIVLALVSMHANWELLGHRLWWIWLIVAAPYVLLSATLLLGLG |
| Ga0307294_100510141 | 3300028810 | Soil | MGDPDRLQAAVREARDDAAPFALGAAGILIVLALVSMHANWDLLG |
| Ga0307302_103878852 | 3300028814 | Soil | VREARDDASPFALAAAAILVALGLVSMQAHWELLGHRLWWIWLIAAAPYVLLSATLLF |
| Ga0307302_105103952 | 3300028814 | Soil | VASTDRDRLHAAVREARDDASPFALAAAVILVALALVSMHARWELLGHRLWWIWLVASAPYIFLAATLQFGLGRLTQH |
| Ga0307310_105737792 | 3300028824 | Soil | VASADRDRLHAAVREARDDASPFALAAAVILVALALVSMHAHWELLGHRLWWIWLVASAPYVFLAATLQFGLGRLTEH |
| Ga0307312_105693412 | 3300028828 | Soil | MDRVRTEVREARDDAAPFALFAAAILVALALVSMHAHWELLGHRLWWIWLLAAAPYVLLSATLLFGLGDLMAHD |
| Ga0307278_100508211 | 3300028878 | Soil | MGETTAPPGQAAVQLDADRLTAAVRDARDDAAPFALAAAGILIALGIVSMHAHWDLLGHRLWWMWLVVAVPYVLLSATLLLG |
| Ga0307277_101803213 | 3300028881 | Soil | MADPDRLQAAAREARDDAAPFALGAAGILIVLALVSMHANWDLLGHRLWWMWLVVA |
| Ga0307277_102863492 | 3300028881 | Soil | VASADRDRLHAAVREARDDASPFALAAAVILVALALVSMHARWELLGHRLWWIW |
| Ga0307495_101939951 | 3300031199 | Soil | VKEARDDAAPFALAAAVILIGLAFVSMHANWDLLGHRLWWIWLVVAAPYVLLSATLLFGLGALTEHDR |
| Ga0307469_106423504 | 3300031720 | Hardwood Forest Soil | MADPDRLHAAAREARDDAAPFALGAAVILVVLALVSMQANWELLGRQLWWIWLIVAAPYALLFATLLFGLGR |
| Ga0335077_102239351 | 3300033158 | Soil | MAEGAAPTGSGLVPPDPDRLSAAVREARDDAAPFALVAAVILVLLALVSLHAHWGLLGHSLWWMWLVVAAPYVFLSATLLFGLGRLVR |
| Ga0364926_106729_2_238 | 3300033812 | Sediment | MAETTAPTEAAAVPPDPDRLHAAMRETRDDAAPFALAAAGILVVLALVSRHAHWDLLGQPLWWIWLVVAVPYVCLSATL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |