Metagenome / Metatranscriptome Family F097864

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097864
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	38 residues
Representative Sequence	TPGTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDA
Number of Associated Samples	87
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	99.04 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.077 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.423 % of family members)
Environment Ontology (ENVO)	Unclassified (45.192 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 15.15% Coil/Unstructured: 84.85%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13690	CheX	18.27
PF01557	FAA_hydrolase	5.77
PF00072	Response_reg	4.81
PF01339	CheB_methylest	2.88
PF03795	YCII	1.92
PF01156	IU_nuc_hydro	1.92
PF04509	CheC	1.92
PF01039	Carboxyl_trans	1.92
PF01797	Y1_Tnp	0.96
PF01584	CheW	0.96
PF07883	Cupin_2	0.96
PF00069	Pkinase	0.96
PF01344	Kelch_1	0.96
PF03255	ACCA	0.96
PF03992	ABM	0.96
PF02371	Transposase_20	0.96
PF01494	FAD_binding_3	0.96
PF00011	HSP20	0.96
PF01209	Ubie_methyltran	0.96
PF00682	HMGL-like	0.96
PF05593	RHS_repeat	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	5.77
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.85
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	2.88
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	1.92
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.92
COG1957	Inosine-uridine nucleoside N-ribohydrolase	Nucleotide transport and metabolism [F]	1.92
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	1.92
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.92
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.96
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.96
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.96
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.96
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.96
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.96
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	0.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.96
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	54.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	13.46 %
Unclassified	root	N/A	1.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.46 %
Unclassified	root	N/A	1.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.46 %
Unclassified	root	N/A	1.92 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.27 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	10.58 %
Unclassified	root	N/A	1.92 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.96 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.27 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.73 %
Unclassified	root	N/A	1.92 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.96 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.27 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.73 %
Unclassified	root	N/A	1.92 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.96 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101436659	All Organisms → cellular organisms → Bacteria → Acidobacteria	1237	Open in IMG/M
3300000559\|F14TC_103090663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300001162\|JGI12714J13572_1009400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300002245\|JGIcombinedJ26739_100776330	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300002917\|JGI25616J43925_10012803	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3699	Open in IMG/M
3300004092\|Ga0062389_104528655	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005172\|Ga0066683_10000696	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	11639	Open in IMG/M
3300005330\|Ga0070690_100991318	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005526\|Ga0073909_10726435	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005537\|Ga0070730_10388673	All Organisms → cellular organisms → Bacteria → Acidobacteria	904	Open in IMG/M
3300005537\|Ga0070730_10424256	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	859	Open in IMG/M
3300005552\|Ga0066701_10176225	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300005598\|Ga0066706_10617211	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300006046\|Ga0066652_101023210	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300006173\|Ga0070716_101774286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300006176\|Ga0070765_100967649	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300006755\|Ga0079222_10444802	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300006797\|Ga0066659_10317049	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300006954\|Ga0079219_10308473	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300007258\|Ga0099793_10276082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300007265\|Ga0099794_10736736	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300009088\|Ga0099830_11098207	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300009088\|Ga0099830_11396055	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300009137\|Ga0066709_103733940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300009545\|Ga0105237_11478372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300009824\|Ga0116219_10393156	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300010043\|Ga0126380_10511375	All Organisms → cellular organisms → Bacteria → Acidobacteria	924	Open in IMG/M
3300010048\|Ga0126373_12641437	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300010159\|Ga0099796_10047059	All Organisms → cellular organisms → Bacteria → Acidobacteria	1483	Open in IMG/M
3300010322\|Ga0134084_10092658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300010366\|Ga0126379_12616245	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300010398\|Ga0126383_10471724	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1308	Open in IMG/M
3300010398\|Ga0126383_13129211	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300011269\|Ga0137392_11090913	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300011270\|Ga0137391_10349447	All Organisms → cellular organisms → Bacteria → Acidobacteria	1270	Open in IMG/M
3300011270\|Ga0137391_11236929	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300011271\|Ga0137393_10172379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1816	Open in IMG/M
3300011271\|Ga0137393_10735574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	844	Open in IMG/M
3300011271\|Ga0137393_11129420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300011271\|Ga0137393_11470963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300012096\|Ga0137389_10447060	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300012189\|Ga0137388_10879481	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300012189\|Ga0137388_11904980	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012202\|Ga0137363_10058444	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2791	Open in IMG/M
3300012203\|Ga0137399_10222169	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300012203\|Ga0137399_11416510	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300012205\|Ga0137362_10307037	Not Available	1374	Open in IMG/M
3300012205\|Ga0137362_10772775	All Organisms → cellular organisms → Bacteria → Acidobacteria	824	Open in IMG/M
3300012205\|Ga0137362_11793602	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012206\|Ga0137380_10686847	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300012206\|Ga0137380_11001907	Not Available	714	Open in IMG/M
3300012207\|Ga0137381_10061591	All Organisms → cellular organisms → Bacteria	3118	Open in IMG/M
3300012207\|Ga0137381_10733459	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300012208\|Ga0137376_10536285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300012209\|Ga0137379_10251653	All Organisms → cellular organisms → Bacteria → Acidobacteria	1680	Open in IMG/M
3300012210\|Ga0137378_11734922	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012351\|Ga0137386_10873599	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	645	Open in IMG/M
3300012357\|Ga0137384_10011462	All Organisms → cellular organisms → Bacteria → Acidobacteria	7202	Open in IMG/M
3300012359\|Ga0137385_10377363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1211	Open in IMG/M
3300012361\|Ga0137360_10196495	All Organisms → cellular organisms → Bacteria → Acidobacteria	1630	Open in IMG/M
3300012361\|Ga0137360_10220820	All Organisms → cellular organisms → Bacteria	1544	Open in IMG/M
3300012683\|Ga0137398_10070275	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2132	Open in IMG/M
3300012683\|Ga0137398_10714121	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300012685\|Ga0137397_11005053	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300012918\|Ga0137396_10699736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300012923\|Ga0137359_10246880	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1592	Open in IMG/M
3300012923\|Ga0137359_10570599	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300012924\|Ga0137413_10771190	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300012976\|Ga0134076_10475999	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300013308\|Ga0157375_12410686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300015356\|Ga0134073_10008888	All Organisms → cellular organisms → Bacteria	2202	Open in IMG/M
3300015358\|Ga0134089_10321842	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300018060\|Ga0187765_11022819	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300020034\|Ga0193753_10059177	All Organisms → cellular organisms → Bacteria → Acidobacteria	2023	Open in IMG/M
3300020581\|Ga0210399_10295380	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300021178\|Ga0210408_10955036	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300021432\|Ga0210384_11176143	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300021560\|Ga0126371_11147655	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300022532\|Ga0242655_10063929	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	938	Open in IMG/M
3300025906\|Ga0207699_10173885	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1443	Open in IMG/M
3300025915\|Ga0207693_10570755	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300025941\|Ga0207711_11250560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300025961\|Ga0207712_11142468	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300026309\|Ga0209055_1139197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	870	Open in IMG/M
3300026333\|Ga0209158_1219556	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300026374\|Ga0257146_1036182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300026532\|Ga0209160_1272084	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300027587\|Ga0209220_1176811	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300027825\|Ga0209039_10295763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300027826\|Ga0209060_10426964	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300027875\|Ga0209283_10584702	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300031740\|Ga0307468_101691481	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300031823\|Ga0307478_10402529	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1134	Open in IMG/M
3300031859\|Ga0318527_10457039	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031962\|Ga0307479_10726660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	971	Open in IMG/M
3300032055\|Ga0318575_10659902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300032180\|Ga0307471_100011096	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6073	Open in IMG/M
3300032180\|Ga0307471_103175941	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300032829\|Ga0335070_10017354	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8349	Open in IMG/M
3300033289\|Ga0310914_10312003	All Organisms → cellular organisms → Bacteria → Acidobacteria	1419	Open in IMG/M
3300033290\|Ga0318519_10561133	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300033402\|Ga0326728_11003240	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300033480\|Ga0316620_10523617	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1100	Open in IMG/M
3300034125\|Ga0370484_0177881	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.15%
Host-Associated	Host-Associated	3.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.23%
Plants	Host-Associated → Plants	3.85%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.85%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Peat	Environmental → Terrestrial → Peat	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.77%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.58%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001162	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1014366591	3300000364	Soil	PGSSAIFVPIRIVFSQSIPSAGLFRHGAAYLKPPE*
F14TC_1030906632	3300000559	Soil	TPGSSAIFVPIRIVFSQAIPSAGLFRHGAAYLKPPE*
JGI12714J13572_10094001	3300001162	Forest Soil	PGTGAIFVPIRIVFSQAIPSAGLHRHGAAYIKPPLDI*
JGIcombinedJ26739_1007763301	3300002245	Forest Soil	SAAIFVPIRIVFSQAITSAGLYRHGAAYLRPPNEAGI*
JGI25616J43925_100128035	3300002917	Grasslands Soil	PFTPGAGAIFVPIRIVFSQAIASAGLFRHGAAYIKPPVDGAD*
Ga0062389_1045286552	3300004092	Bog Forest Soil	VPFTPGSSAIFVPIRIVFSQPIVSAGLFRHGAAYIKPPIDFGG*
Ga0066683_100006961	3300005172	Soil	PFTPGTGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPSDN*
Ga0070690_1009913181	3300005330	Switchgrass Rhizosphere	FTPGSAAIFVPIRVVFSQAIPTAGLYRHGAAYIKIPVDGGA*
Ga0073909_107264351	3300005526	Surface Soil	YTPGTGAIFVPIRIVFSQHIPSAGLYRHGAAYLRPPD*
Ga0070730_103886733	3300005537	Surface Soil	PGAGAIFVPIRIVFSQPIPSAGLFRHGAAYIKPPE*
Ga0070730_104242563	3300005537	Surface Soil	IFVPIRIVFSQALPNIGLYRHGAAYVKPPVDGGA*
Ga0066701_101762251	3300005552	Soil	TGAIFVPIRIVFSQAMPTAGLYRHGAAYIKPPLDT*
Ga0066706_106172111	3300005598	Soil	VEVAVPFTPGTGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPIDK*
Ga0066652_1010232101	3300006046	Soil	VAVPFTPGSGAIFVPIRIVFSQAIPSAGLHRHGAAYIKPPLDI*
Ga0070716_1017742862	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	FTPGSSAIFVPIRIVFSQAIPSAGLFRHGAAYLKPPG*
Ga0070765_1009676491	3300006176	Soil	SGAIFVPIRIVFSQAIPSVGLYRHGAAYIRPASDSAD*
Ga0079222_104448022	3300006755	Agricultural Soil	TPGTGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPIDN*
Ga0066659_103170494	3300006797	Soil	PFTPGTGAIFVPIRIVFSQAIPSAGLHRHGAAYIKPPLDI*
Ga0079219_103084731	3300006954	Agricultural Soil	GAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPMDN*
Ga0099793_102760822	3300007258	Vadose Zone Soil	TPGSGAIFVPIRIVFSQAIPTAGLYRHGAAYVKPPLDI*
Ga0099794_107367362	3300007265	Vadose Zone Soil	TPGAGAIFVPIRIVFSQALPAVGLYRHGAAYVKPPMDGA*
Ga0099830_110982071	3300009088	Vadose Zone Soil	VLSTPGAGAIFVPIRIVFSQALPAVGLYRHGAAYVKPPMDGV*
Ga0099830_113960552	3300009088	Vadose Zone Soil	AGAIFVPIRIVFSQGLPAVGLYRHGAAYVKPPTDGA*
Ga0066709_1037339402	3300009137	Grasslands Soil	PGTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDV*
Ga0105237_114783722	3300009545	Corn Rhizosphere	GSSAIFVPIRIVFSQSIPSAGLFRHGAAYLKPPE*
Ga0116219_103931561	3300009824	Peatlands Soil	PGAGAIFVPIRIVFSQPIAKAGLFRHGAAYVRTPE*
Ga0126380_105113752	3300010043	Tropical Forest Soil	PGTGAIFVPIRIVFSTPIASAGLFRHGAAYLRPPE*
Ga0126373_126414372	3300010048	Tropical Forest Soil	YTPGAGAIFVPIRIVFSQPISTAGLFRHGAEYLRPPD*
Ga0099796_100470591	3300010159	Vadose Zone Soil	PFTPGAGAIFVPIRIVFSEPIRSAGLFRHGAAYLKPPE*
Ga0134084_100926581	3300010322	Grasslands Soil	GAIFVPIRIVFSQAIPSAGLHRHGAAYIKPPLDI*
Ga0126379_126162452	3300010366	Tropical Forest Soil	GTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPIDN*
Ga0126383_104717241	3300010398	Tropical Forest Soil	VPFTPGSSAIFVPIRIVFSQAIPSAGLFRHGAAYLKPPE*
Ga0126383_131292111	3300010398	Tropical Forest Soil	VPYTAGTGTIFVPIRIIFSQDIPAAGLYRHGAAYIKPAFNT*
Ga0137392_110909131	3300011269	Vadose Zone Soil	TPGTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDS*
Ga0137391_103494471	3300011270	Vadose Zone Soil	TGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDA*
Ga0137391_112369292	3300011270	Vadose Zone Soil	GAGAIFVPIRIVFSQALPAVGLYRHGAAYVKPPMDGA*
Ga0137393_101723791	3300011271	Vadose Zone Soil	PGSGNIFVPVRIVFSQQIPAAGLYRHGASYIQQTSDRPE*
Ga0137393_107355741	3300011271	Vadose Zone Soil	PFTPGAGAIFVPIRIVFSQPIPSAGLFRHGAAYIKPPVDAGD*
Ga0137393_111294202	3300011271	Vadose Zone Soil	PGTGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPIDN*
Ga0137393_114709631	3300011271	Vadose Zone Soil	GAIFVPIRIVFSQSIPTAGLYRHGAAYIKPPLDA*
Ga0137389_104470602	3300012096	Vadose Zone Soil	PGTGAIFVPIRIVFSQAIPAVGLYRHGAAYIKPPLDA*
Ga0137388_108794811	3300012189	Vadose Zone Soil	TGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPIDN*
Ga0137388_119049802	3300012189	Vadose Zone Soil	GAIFVPIRIVFSQPIAAAGLFRHGAAYIKPPIDAGG*
Ga0137363_100584441	3300012202	Vadose Zone Soil	GAGAIFVPIRIVFSQALPAVGLYRHGAAYVKPPGDGA*
Ga0137399_102221694	3300012203	Vadose Zone Soil	AIFVPIRIVFSQAIPSAGLFRHGAAYIRPPVDGAD*
Ga0137399_114165101	3300012203	Vadose Zone Soil	TPGSGAIFVPIRIVFSQAIPSAGLYRHGAAYLRAPE*
Ga0137362_103070371	3300012205	Vadose Zone Soil	TPGSGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPLDT*
Ga0137362_107727751	3300012205	Vadose Zone Soil	TGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPRDA*
Ga0137362_117936022	3300012205	Vadose Zone Soil	FTPGAGAIFVPIRIVFSQALPTVGLYRHGAAYVKPPMDGV*
Ga0137380_106868472	3300012206	Vadose Zone Soil	TGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPMDN*
Ga0137380_110019071	3300012206	Vadose Zone Soil	TPGNSAIFVPIRIVSSRPIPTAGLFRHGAAYVSAPSD*
Ga0137381_100615911	3300012207	Vadose Zone Soil	FTPGTGAIFVPIRIVFSQTIPTAGLYRHGAAYIKPPLDA*
Ga0137381_107334592	3300012207	Vadose Zone Soil	AVPFTPGSGAIFVPIRIVFSQAIPSAGLHRHGAAYIKPPLDT*
Ga0137376_105362853	3300012208	Vadose Zone Soil	AVPFTPGTGAIFVPIRIVFSQAIPSAGLHRHGAAYIKPPLDI*
Ga0137379_102516531	3300012209	Vadose Zone Soil	GAIFVPIRIVFSQTIPTAGLYRHGAAYIKPPLDV*
Ga0137378_117349221	3300012210	Vadose Zone Soil	NIFVPVRIVFSQQIPAAGLYRHGAAYIRLAPSDSE*
Ga0137386_108735992	3300012351	Vadose Zone Soil	GTGAIFVPIRIVFSQTIPTAGLYRHGAAYIKPPLDV*
Ga0137384_100114621	3300012357	Vadose Zone Soil	EVAVPFTPGTGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPLDA*
Ga0137385_103773631	3300012359	Vadose Zone Soil	GTGAIFVPIRIVFSQTIPTAGLYRHGAAYIKPPLDA*
Ga0137360_101964953	3300012361	Vadose Zone Soil	TPGTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDA*
Ga0137360_102208203	3300012361	Vadose Zone Soil	PGTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDG*
Ga0137398_100702753	3300012683	Vadose Zone Soil	GTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDA*
Ga0137398_107141211	3300012683	Vadose Zone Soil	AVPFTPGAGAIFVPIRIVFSQGLPAVGLYRHGAAYVKPPMDGA*
Ga0137397_110050532	3300012685	Vadose Zone Soil	FTPGAGAIFVPIRIVFSQGLPAVGLYRLGAAYVKPPMDGA*
Ga0137396_106997362	3300012918	Vadose Zone Soil	TGAIFVPIRIVFSQSIPTAGLYRHGASYIKPPLDL*
Ga0137359_102468801	3300012923	Vadose Zone Soil	TPGSGAIFVPIRIVFSQAIPTAGLHRHGAAYVKPPLDA*
Ga0137359_105705993	3300012923	Vadose Zone Soil	VPFTPGSGAIFVPIRIVFSQPIPSAGLFRHGAAYLKPPE*
Ga0137413_107711901	3300012924	Vadose Zone Soil	PGAGAIFVPIRIVFSQSIPTAGLYRHGAAYIKPPLDV*
Ga0134076_104759992	3300012976	Grasslands Soil	PFTPGSGAIFVPIRIVFSQPIPSAGLFRHGAAYLKPPE*
Ga0157375_124106862	3300013308	Miscanthus Rhizosphere	GNSAIFVPIRIVFSQAIPSAGLFRHGAAYLKPPV*
Ga0134073_100088883	3300015356	Grasslands Soil	VPFTPGTGAIFVPIRIVFSQAIPTAGLHRHGAAYIKPPIDK*
Ga0134089_103218422	3300015358	Grasslands Soil	PGTGAIFVPIRIVFSQAMPTAGLYRHGAAYIKPPLDT*
Ga0187765_110228192	3300018060	Tropical Peatland	TPGSAAIFVPIRIVFSQAIAAAGLFRHGAAYIRPPGEGGD
Ga0193753_100591771	3300020034	Soil	TPGSGAIFVPIRIVFSQAIPSAGLYRHGAAYLRPGIEPGS
Ga0210399_102953804	3300020581	Soil	TPGSSAIFVPIRIVFSQAISSAGLYRHGAAYIRTAVDSGD
Ga0210408_109550363	3300021178	Soil	VPFTPGAGAIFVPIRIVFSQALPAVGLYRHGAAYVKPPTEGA
Ga0210384_111761433	3300021432	Soil	TPGAGAIFVPIRIVFSQALPAVGLYRHGAAYVKPPTEGA
Ga0126371_111476552	3300021560	Tropical Forest Soil	VPFTPGTGAIFVPIRIVFSQAIPTAGLHRHGAAYVKPPIDN
Ga0242655_100639293	3300022532	Soil	AVPFTPGSSAIFVPIRIVFSQPIPSAGLFRHGAAYIRTPVAAGD
Ga0207699_101738851	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TPGSGAIFVPVRIVFSVALPSAGLFKHGAAYVKALSGAGA
Ga0207693_105707551	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AVPFTPGAGAIFVPIRIVFSQPIRSAGLFRHGAAYLKPPE
Ga0207711_112505602	3300025941	Switchgrass Rhizosphere	VPFTPGSSAIFVPIRIVFSQAIPSAGLFRHGAAYLKPPE
Ga0207712_111424682	3300025961	Switchgrass Rhizosphere	AIFVPIRVVFSQAIPTAGLYRHGAAYIKIPVDGGA
Ga0209055_11391971	3300026309	Soil	FTPGTGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDV
Ga0209158_12195562	3300026333	Soil	PGSGNIFVPVRIVFSQQIPAAGLYRHGAAYIRLAPSDSE
Ga0257146_10361821	3300026374	Soil	GSGAIFVPIRIVFSQAIPTAGLYRHGAAYVKPPLDA
Ga0209160_12720842	3300026532	Soil	TGAIFVPIRIVFSQAIPTAGLYRHGAAYIKPPLDV
Ga0209220_11768112	3300027587	Forest Soil	TGAIFVPIRIVFSQAIPTAGLYRHGASYIKPPLDA
Ga0209039_102957631	3300027825	Bog Forest Soil	VPYTPGAGAIFVPIRIVSCQPIATAGLFRHGAAYVRTME
Ga0209060_104269641	3300027826	Surface Soil	GSAAIFVPIRIVFSQAIPSAGLYRHGAAYLRPPNEAGA
Ga0209283_105847021	3300027875	Vadose Zone Soil	GTGAIFVPIRIVFSQAIPAVGLYRHGAAYIKPPLDA
Ga0307468_1016914811	3300031740	Hardwood Forest Soil	PGAGAIFVPIRIVFSQALPNVGLYRHGAAYVKANVDGGA
Ga0307478_104025293	3300031823	Hardwood Forest Soil	PFTPGSSAIFVPIRIVFSQPIPSAGLFRHGASYLKPPE
Ga0318527_104570391	3300031859	Soil	YTPGAGSIFVPIRIVFSQPISTAGLFRHGAAYLRPPD
Ga0307479_107266601	3300031962	Hardwood Forest Soil	TPGTGAIFVPIRIVFSQSIPTAGLYRHGAAYIKPPLDA
Ga0318575_106599021	3300032055	Soil	PGTGAIFVPIRIVFSQAIPTVGLHRHGAAYIKPPIDN
Ga0307471_1000110961	3300032180	Hardwood Forest Soil	TPGSAAIFVPIRIVFSQAIPAAGLYRHGAAYIRPPVDSGA
Ga0307471_1031759411	3300032180	Hardwood Forest Soil	AGAIFVPIRIVFSQAIPSAGLFRHGAAYIRPPVDAGD
Ga0335070_100173541	3300032829	Soil	YTPGAGAIFVPIRIVFSQPIAAGLFRHGAAYLRPPE
Ga0310914_103120031	3300033289	Soil	AVPFTPGAGAIFVPIRIVFSQPIASAGLFRHGASYLRPPE
Ga0318519_105611331	3300033290	Soil	VPYTPGAGAIFVPIRIVFSQPISTAGLFRHGASYLRPPE
Ga0326728_110032401	3300033402	Peat Soil	PGAGAIFVPIRIVFSQPIATAGLFRHGAAYVRPPE
Ga0316620_105236171	3300033480	Soil	SGAIFVPIRIVFSQAIASAGLYRHGAAYIRPPMDSAD
Ga0370484_0177881_38_181	3300034125	Untreated Peat Soil	VEVAVPFTPGSSAIFVPIRIVFSVPLPSAGLFKHGAAYIKSPNESGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097864

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences