Metagenome / Metatranscriptome Family F097861

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097861
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	76 residues
Representative Sequence	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Number of Associated Samples	90
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	67.31 %
% of genes near scaffold ends (potentially truncated)	38.46 %
% of genes from short scaffolds (< 2000 bps)	89.42 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.538 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.154 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 1.32% β-sheet: 57.89% Coil/Unstructured: 40.79%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF09361	Phasin_2	12.50
PF01515	PTA_PTB	12.50
PF01872	RibD_C	5.77
PF05239	PRC	2.88
PF00117	GATase	1.92
PF06707	DUF1194	0.96
PF07969	Amidohydro_3	0.96
PF07592	DDE_Tnp_ISAZ013	0.96
PF04228	Zn_peptidase	0.96
PF11339	DUF3141	0.96
PF02586	SRAP	0.96
PF00857	Isochorismatase	0.96
PF00291	PALP	0.96
PF13460	NAD_binding_10	0.96
PF00486	Trans_reg_C	0.96
PF00106	adh_short	0.96
PF00072	Response_reg	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0280	Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase)	Energy production and conversion [C]	12.50
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	5.77
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	5.77
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.96
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.96
COG2321	Predicted metalloprotease	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
All Organisms	root	All Organisms	38.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
cellular organisms	root	All Organisms → cellular organisms	38.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.23 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.38 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.42 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.65 %
Boseaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.96 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.96 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.96 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.96 %
Bosea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea	0.96 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.96 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.81 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.96 %
unclassified Bosea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea	0.96 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.81 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.96 %
Bosea sp. BK604	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. BK604	0.96 %
Pseudomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp.	0.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.81 %
Arthrobacter sp. Hiyo6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo6	0.96 %
Bosea sp. BK604	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. BK604	0.96 %
Pseudomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp.	0.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10158096	Not Available	917	Open in IMG/M
3300003505\|JGIcombinedJ51221_10196516	Not Available	818	Open in IMG/M
3300004091\|Ga0062387_101772210	Not Available	503	Open in IMG/M
3300004139\|Ga0058897_11176773	Not Available	950	Open in IMG/M
3300004643\|Ga0062591_100984304	Not Available	800	Open in IMG/M
3300005093\|Ga0062594_100827595	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300005328\|Ga0070676_10737510	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005329\|Ga0070683_101658578	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005332\|Ga0066388_104281168	Not Available	727	Open in IMG/M
3300005332\|Ga0066388_106004395	Not Available	613	Open in IMG/M
3300005365\|Ga0070688_100152191	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
3300005367\|Ga0070667_100978841	Not Available	789	Open in IMG/M
3300005435\|Ga0070714_101266393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo6	720	Open in IMG/M
3300005436\|Ga0070713_100783213	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300005457\|Ga0070662_100085588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2356	Open in IMG/M
3300005529\|Ga0070741_10166671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2189	Open in IMG/M
3300005537\|Ga0070730_10684017	Not Available	651	Open in IMG/M
3300005548\|Ga0070665_100451017	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300005564\|Ga0070664_101567314	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005602\|Ga0070762_10224650	Not Available	1158	Open in IMG/M
3300006028\|Ga0070717_10248815	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300006041\|Ga0075023_100274621	Not Available	684	Open in IMG/M
3300006047\|Ga0075024_100419566	Not Available	685	Open in IMG/M
3300006050\|Ga0075028_100057734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1885	Open in IMG/M
3300006052\|Ga0075029_100557218	Not Available	762	Open in IMG/M
3300006059\|Ga0075017_100029976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3581	Open in IMG/M
3300006059\|Ga0075017_100504629	Not Available	918	Open in IMG/M
3300006059\|Ga0075017_101674976	Not Available	503	Open in IMG/M
3300006086\|Ga0075019_10300164	Not Available	967	Open in IMG/M
3300006162\|Ga0075030_100362470	Not Available	1156	Open in IMG/M
3300006174\|Ga0075014_100041811	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	1923	Open in IMG/M
3300006175\|Ga0070712_100484089	Not Available	1035	Open in IMG/M
3300006893\|Ga0073928_10314482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1172	Open in IMG/M
3300006893\|Ga0073928_10663057	Not Available	731	Open in IMG/M
3300006904\|Ga0075424_102319932	Not Available	564	Open in IMG/M
3300006953\|Ga0074063_13608152	Not Available	643	Open in IMG/M
3300007982\|Ga0102924_1127657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1219	Open in IMG/M
3300009148\|Ga0105243_11816428	Not Available	641	Open in IMG/M
3300009545\|Ga0105237_11216727	Not Available	760	Open in IMG/M
3300009551\|Ga0105238_11130284	Not Available	807	Open in IMG/M
3300009683\|Ga0116224_10076983	Not Available	1624	Open in IMG/M
3300010048\|Ga0126373_10748978	Not Available	1037	Open in IMG/M
3300010371\|Ga0134125_12415170	Not Available	571	Open in IMG/M
3300010373\|Ga0134128_10161336	All Organisms → cellular organisms → Bacteria	2533	Open in IMG/M
3300010375\|Ga0105239_12233847	Not Available	636	Open in IMG/M
3300010376\|Ga0126381_100820401	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300010396\|Ga0134126_11549501	Not Available	730	Open in IMG/M
3300010397\|Ga0134124_10628437	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300011119\|Ga0105246_11968575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	563	Open in IMG/M
3300012089\|Ga0153924_1052979	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300012960\|Ga0164301_11333391	Not Available	583	Open in IMG/M
3300012987\|Ga0164307_10603093	Not Available	847	Open in IMG/M
3300014501\|Ga0182024_10004559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31760	Open in IMG/M
3300014745\|Ga0157377_10491106	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300016404\|Ga0182037_11860267	Not Available	539	Open in IMG/M
3300017993\|Ga0187823_10201287	Not Available	653	Open in IMG/M
3300017994\|Ga0187822_10355750	Not Available	530	Open in IMG/M
3300019189\|Ga0184585_116431	Not Available	930	Open in IMG/M
3300019194\|Ga0184586_147373	Not Available	872	Open in IMG/M
3300019361\|Ga0173482_10107917	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300019362\|Ga0173479_10661888	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300020579\|Ga0210407_10051317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3080	Open in IMG/M
3300020579\|Ga0210407_10238967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1414	Open in IMG/M
3300020579\|Ga0210407_10281643	Not Available	1297	Open in IMG/M
3300020579\|Ga0210407_10391489	Not Available	1087	Open in IMG/M
3300020579\|Ga0210407_10446654	Not Available	1011	Open in IMG/M
3300020581\|Ga0210399_10015221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6065	Open in IMG/M
3300020581\|Ga0210399_11406846	Not Available	545	Open in IMG/M
3300021088\|Ga0210404_10017394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3040	Open in IMG/M
3300021168\|Ga0210406_10096938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2508	Open in IMG/M
3300021178\|Ga0210408_10206083	All Organisms → cellular organisms → Bacteria → Proteobacteria	1564	Open in IMG/M
3300021178\|Ga0210408_11036405	Not Available	633	Open in IMG/M
3300021406\|Ga0210386_10881508	Not Available	767	Open in IMG/M
3300021407\|Ga0210383_10220448	Not Available	1624	Open in IMG/M
3300021407\|Ga0210383_10550958	Not Available	995	Open in IMG/M
3300021475\|Ga0210392_10344378	Not Available	1077	Open in IMG/M
3300021478\|Ga0210402_10121353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. BK604	2363	Open in IMG/M
3300021478\|Ga0210402_11617390	Not Available	575	Open in IMG/M
3300022499\|Ga0242641_1049092	Not Available	507	Open in IMG/M
3300022507\|Ga0222729_1067949	Not Available	521	Open in IMG/M
3300022508\|Ga0222728_1021567	Not Available	936	Open in IMG/M
3300022731\|Ga0224563_1001390	Not Available	1379	Open in IMG/M
3300023544\|Ga0247542_104425	Not Available	571	Open in IMG/M
3300023547\|Ga0247554_102466	Not Available	691	Open in IMG/M
3300024271\|Ga0224564_1055817	Not Available	774	Open in IMG/M
3300025134\|Ga0207416_1023092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3156	Open in IMG/M
3300025900\|Ga0207710_10265997	Not Available	860	Open in IMG/M
3300025915\|Ga0207693_10202727	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300025920\|Ga0207649_10446702	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300025935\|Ga0207709_11180267	Not Available	630	Open in IMG/M
3300025981\|Ga0207640_11611975	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300026121\|Ga0207683_12051719	Not Available	520	Open in IMG/M
3300027173\|Ga0208097_1033918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	590	Open in IMG/M
3300027915\|Ga0209069_10264288	Not Available	900	Open in IMG/M
3300029701\|Ga0222748_1078244	Not Available	612	Open in IMG/M
3300030969\|Ga0075394_12038927	Not Available	535	Open in IMG/M
3300031057\|Ga0170834_104564657	Not Available	684	Open in IMG/M
3300031090\|Ga0265760_10241721	Not Available	622	Open in IMG/M
3300031231\|Ga0170824_114008670	Not Available	1329	Open in IMG/M
3300031421\|Ga0308194_10081217	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300031708\|Ga0310686_106765209	Not Available	1147	Open in IMG/M
3300031708\|Ga0310686_109809168	Not Available	1007	Open in IMG/M
3300031716\|Ga0310813_10588082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	983	Open in IMG/M
3300031912\|Ga0306921_11232041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp.	832	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.69%
Host-Associated	Host-Associated	17.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.38%
Aquatic	Environmental → Aquatic	17.31%
Plants	Host-Associated → Plants	16.35%
Fungi	Host-Associated → Fungi	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.42%
Sediment	Environmental → Aquatic → Sediment	10.58%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.85%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.96%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.42%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	10.58%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019194	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300023544	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023547	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101580961	3300003505	Forest Soil	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG*
JGIcombinedJ51221_101965162	3300003505	Forest Soil	TAKFATDDAQEIRLEYLVSAKSSTEAKSELERRLLGQEVFGYIVEKVVAATKQEAAFFRLPSGCVQLLG*
Ga0062387_1017722101	3300004091	Bog Forest Soil	MHWRFKTTAKFLADDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATKQEAALFKLPA
Ga0058897_111767732	3300004139	Forest Soil	RERGDHLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG*
Ga0062591_1009843042	3300004643	Soil	VRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG*
Ga0062594_1008275951	3300005093	Soil	VRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLP
Ga0070676_107375102	3300005328	Miscanthus Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQ
Ga0070683_1016585781	3300005329	Corn Rhizosphere	VRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSVEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQLLG*
Ga0066388_1042811681	3300005332	Tropical Forest Soil	GRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQLLG*
Ga0066388_1060043952	3300005332	Tropical Forest Soil	GRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIEKIVAATSEEAAVFKLPAGCVQLLG*
Ga0070688_1001521911	3300005365	Switchgrass Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQLLG*
Ga0070667_1009788412	3300005367	Switchgrass Rhizosphere	GGRRVRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG*
Ga0070714_1012663932	3300005435	Agricultural Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG*
Ga0070713_1007832131	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAVFKLPAGCVQLLG*
Ga0070662_1000855883	3300005457	Corn Rhizosphere	VRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLL
Ga0070741_101666712	3300005529	Surface Soil	MYWPFKTTVRFQSRDGTEARVDYLVSAGNMVEAKFELQRRFLGEEIFGYKVESVVAATKEEAAAFLLPAGCIMLLG*
Ga0070730_106840172	3300005537	Surface Soil	MYWPFKTTVRFHGSQDEIESRLDYLVSAGNSIEAKLELERRLLAQEVFGYKIESVVAATSEEAAKFTLPAGCVMLLG*
Ga0070665_1004510173	3300005548	Switchgrass Rhizosphere	DGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG*
Ga0070664_1015673142	3300005564	Corn Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSVEAKYELERRFLNQEVFGYKIEKIVAATSEEAAVFKLPAGCVQLLG*
Ga0070762_102246501	3300005602	Soil	MYRPFKTTVKFKSDDGRDVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0070717_102488152	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAVFKLPAGCVQLLG*
Ga0075023_1002746212	3300006041	Watersheds	DHLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0075024_1004195662	3300006047	Watersheds	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGNKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0075028_1000577343	3300006050	Watersheds	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0075029_1005572181	3300006052	Watersheds	MHWPFKTTAKFLTDDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATKQEAALFKLPAGCIQLLG*
Ga0075017_1000299763	3300006059	Watersheds	VKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0075017_1005046292	3300006059	Watersheds	MHWPFKTTVKFTTDGAQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEKVVAATKQEAAMFKLPSGCVQLLG*
Ga0075017_1016749761	3300006059	Watersheds	MEVYRESNMHWPFKTTAKFLTNDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATKQEAALFKLPAGCIQLLG*
Ga0075019_103001641	3300006086	Watersheds	MYWPFKTTVKFATDDAQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEKVVAATKQEAAIFRLPSGCVQLLG*
Ga0075030_1003624703	3300006162	Watersheds	MHWPFKTTAKFLTDDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATEQEAALFKLPAGCVQLLG*
Ga0075014_1000418111	3300006174	Watersheds	MYWPFKTTVKFTTDGAQEIRLEYLVSANSGIGAKCELERRFIDQEVFGYIVEKVVAATTQEAAMFNLPSGCVQLLG*
Ga0070712_1004840891	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MYWPFKTTVKFATDDSQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEKVVAATKQEAAIFRLPSGCVQLLG*
Ga0073928_103144823	3300006893	Iron-Sulfur Acid Spring	KTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0073928_106630572	3300006893	Iron-Sulfur Acid Spring	MDQAREGRSLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0075424_1023199321	3300006904	Populus Rhizosphere	MYRPFKTTVKFQSDDGREIRLQYLVSADNSIEAKCELERRFLHQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0074063_136081522	3300006953	Soil	MYRPFKTTVKFKSDDGREVRLRYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG*
Ga0102924_11276571	3300007982	Iron-Sulfur Acid Spring	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKFPAGCVQLLG*
Ga0105243_118164281	3300009148	Miscanthus Rhizosphere	RGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG*
Ga0105237_112167272	3300009545	Corn Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAAKSEEAAIFKLPAGCVQLLG*
Ga0105238_111302842	3300009551	Corn Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSVEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQLLG*
Ga0116224_100769833	3300009683	Peatlands Soil	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEMFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0126373_107489781	3300010048	Tropical Forest Soil	TVKFQSDDGREVTLQYLVSADNSIEAKYELERRFLNQEVFGYRIEKIVAATSEEAAIFKLPAGCVQLLG*
Ga0134125_124151701	3300010371	Terrestrial Soil	MYRPFKTTEKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG*
Ga0134128_101613362	3300010373	Terrestrial Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSGDNSIEAKYELERRFLNLEVFGYTIERIVAATSEEAAIFKLPAGCVQLLG*
Ga0105239_122338471	3300010375	Corn Rhizosphere	MYWPFKTTVKFATDDSQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVDKVLSATKHEAAIFRLPFGCVQLLG*
Ga0126381_1008204011	3300010376	Tropical Forest Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQLL
Ga0134126_115495011	3300010396	Terrestrial Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSVEAKYELERRFLNQEVFGYKIERIVAATSEEAAVFKLPAGCVQLLG*
Ga0134124_106284371	3300010397	Terrestrial Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAVFKLPA
Ga0105246_119685751	3300011119	Miscanthus Rhizosphere	MYRPFKTTVKFNSDDGREIRLQYLVSADNSIEAKCELERRFLHQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0153924_10529791	3300012089	Attine Ant Fungus Gardens	MGRRVRGDHPMYRPFKTTVKFKSDDGREVTLQYLVSADNSIEAKYELERRFLNQEVFGYRIEKIVAATSAEAAIFKLPAGCVQLLG*
Ga0164301_113333911	3300012960	Soil	PFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0164307_106030931	3300012987	Soil	SDDGREVRLQYLVSADNSIEARCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG*
Ga0182024_1000455917	3300014501	Permafrost	MYWPFKTTVKFASEDGSVRRLSYLVSAGNSIEAKCELERRFRSEELFQYKIEEVVEATTQEAALFKLPAGCVQLLG*
Ga0157377_104911061	3300014745	Miscanthus Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSVEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQFLG*
Ga0182037_118602671	3300016404	Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQLLG
Ga0187823_102012871	3300017993	Freshwater Sediment	MYWPFRTTVRFSGSHDESESRLDYLVSAVSGIEAKKELRRRLLSQEVFGYKIESAIAATKEEAARFMLPAGCVMLLG
Ga0187822_103557501	3300017994	Freshwater Sediment	MYRPFKTTVKFKSDDGREVKLQYLVSADNSIEARCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0184585_1164311	3300019189	Soil	LMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0184586_1473731	3300019194	Soil	KSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0173482_101079172	3300019361	Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIEKIVAATSEEAAIFKLTAGCVQLLG
Ga0173479_106618881	3300019362	Soil	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAG
Ga0210407_100513173	3300020579	Soil	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0210407_102389671	3300020579	Soil	MYRPFKTTVKFKSDDGRDVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0210407_102816431	3300020579	Soil	MYRPFKTTAKFATDDAQEIRLEYLVSAKSSTEAKSELERRLLGQEVFGYMVEKVVAATKQEAAFFRLPSGCVQLLG
Ga0210407_103914891	3300020579	Soil	MYWPFKTTVKFTTDSAQEIRLEYLVSANSSIGAKCELERRLIDQEVFGYIVEKVVAATTQEAAMFNLPSGCVQLLG
Ga0210407_104466543	3300020579	Soil	MYWPFKTTVKFATDDAQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEKVVAATKQEAAIFRLPSGCVQLLG
Ga0210399_100152214	3300020581	Soil	MYWPFKTTVKFATDDAQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEKVVAATKQEAAIFGLPSGCVQLLG
Ga0210399_114068461	3300020581	Soil	MEVHPGESNTHWPFKTTAKFLTDDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATEQEAALFKLPAGCVQLLG
Ga0210404_100173944	3300021088	Soil	MYRPFKTTVKFKSDDGRDVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0210406_100969384	3300021168	Soil	MYWPFKTTVKFTTDGAQEIRLEYLVSANSSIGAKCELERRLIDQEVFGYIVEKVVAATTQEAAMFDLPSGCVQLLG
Ga0210408_102060831	3300021178	Soil	MYRPFKTTVKFATDDAQEIRLEYLVSAKSSTEAKSELERRLLGQEVFGYIVEKVVAATKQEAAFFRLPSGCVQLLG
Ga0210408_110364051	3300021178	Soil	MYWPFKTTVKFATDDAQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEKVVAATKQEAAIFGLPSGCVQLL
Ga0210386_108815082	3300021406	Soil	MHWPFKATAKFRADDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATEQEAALFKLPAGCVQLLG
Ga0210383_102204481	3300021407	Soil	SAKEIRLKYLVSANSSIGAKCELERRLIDQEVFGYIVEKVVAATTQEAAMFNLPSGCVQLLG
Ga0210383_105509581	3300021407	Soil	MYWPFKTTVKFTTDGAQEIRLEYLVSANSSIGAKCELERRLIDQEVFGYIVEKVVAATTQEAA
Ga0210392_103443781	3300021475	Soil	LIKIFPLQWTKREWGDHLMYRPFKTTVKFKSDDGRDVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0210402_101213532	3300021478	Soil	MYWPFKTTAKFLTDDGRELRLEYLVSANNSVGAKYELERRLIGQEVFGYTIEKVEPATKQEAALFKLPAGCVQLLG
Ga0210402_116173901	3300021478	Soil	SPIGWRCTGESNMHWPFKTTAKFLTDDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATKQEAALFKLPAGCIQLLG
Ga0242641_10490922	3300022499	Soil	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEMFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0222729_10679491	3300022507	Soil	KRERGDHLMYRPLKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0222728_10215671	3300022508	Soil	KRERGDHLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0224563_10013903	3300022731	Soil	MYWPFKTTVKFATDDAQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEMVVAATKQEAAIFRLPSGCVQLLG
Ga0247542_1044251	3300023544	Soil	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLP
Ga0247554_1024661	3300023547	Soil	RERGDHLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0224564_10558171	3300024271	Soil	VKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0207416_10230921	3300025134	Iron-Sulfur Acid Spring	VKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKFPAGCVQLLG
Ga0207710_102659972	3300025900	Switchgrass Rhizosphere	VRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG
Ga0207693_102027271	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG
Ga0207649_104467021	3300025920	Corn Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSVEAKYELERRFLNQEVFGYKIEKIVAATSEEAAVFKLPAGCVQLLG
Ga0207709_111802672	3300025935	Miscanthus Rhizosphere	HLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIFKLPAGCVQLLG
Ga0207640_116119752	3300025981	Corn Rhizosphere	MYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKYELERRFLNQEVFGYKIERIVAATSEEAAIF
Ga0207683_120517191	3300026121	Miscanthus Rhizosphere	VRGDHLMYRPFKTTVKFRSDDGRDVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIEKIVAATSEEAAIFKLPAGCVQLLG
Ga0208097_10339182	3300027173	Forest Soil	MYRPFKTTVKFKSDDGRDVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEA
Ga0209069_102642881	3300027915	Watersheds	MHWPFKTTAKFLTDDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATKQEAALFKLPAGCVQLLG
Ga0222748_10782442	3300029701	Soil	RERGDHLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0075394_120389272	3300030969	Soil	GDHLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0170834_1045646571	3300031057	Forest Soil	MHWPFKTTAKFLTDDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATEQEAALFKLPAGCIQLLG
Ga0265760_102417212	3300031090	Soil	MYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVYGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0170824_1140086701	3300031231	Forest Soil	MHWPFKTTAKFRADDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKVEPATEQEAALFKLPAGCVQLLG
Ga0308194_100812173	3300031421	Soil	KIFPLQWTKRERGDHLMYRPFKTTVKFKSDDGREVRLQYLVSADNSIEAKCELERRFLNQEVFGYKIETIVAATSAEAAIFKLPAGCVQLLG
Ga0310686_1067652092	3300031708	Soil	MHWPFKTTAKFLTDDGRELRLEYLVSANNSVAAKYELERRLIGQEVFGYTIEKAEPATKQEAALFKLPAGCIQLLG
Ga0310686_1098091682	3300031708	Soil	MHWPFKTTVKFTTDGAQEIRLEYLVSAKSSIEAKSELERRLLGQEVFGYIVEKVVAATKQEAAMFKLPSGCVQLLG
Ga0310813_105880822	3300031716	Soil	MYRPFKTTVKFQSDDGREIRLQYLVSADNSIEAKCELERRFLHQEVFGYKIETIVAATSEEAAIFKLPAGCVQLLG
Ga0306921_112320411	3300031912	Soil	MYRPFKTTVKFQSDDGREVTLQYLVSADNSIEAKYELERRFLNQEVFGYRIEKIVAATSEEAAIFKLPAGCVQLLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097861

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences