NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F097827

Metagenome / Metatranscriptome Family F097827

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F097827
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 118 residues
Representative Sequence RFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPSGPTIYTPGEGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV
Number of Associated Samples 94
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.92 %
% of genes near scaffold ends (potentially truncated) 96.15 %
% of genes from short scaffolds (< 2000 bps) 93.27 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(23.077 % of family members)
Environment Ontology (ENVO) Unclassified
(30.769 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.077 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 15.91%    β-sheet: 18.18%    Coil/Unstructured: 65.91%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF02687FtsX 4.81
PF00211Guanylate_cyc 4.81
PF12697Abhydrolase_6 2.88
PF13280WYL 2.88
PF08448PAS_4 0.96
PF07250Glyoxal_oxid_N 0.96
PF13432TPR_16 0.96
PF06736TMEM175 0.96
PF07589PEP-CTERM 0.96
PF00892EamA 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 4.81
COG3548Uncharacterized membrane proteinFunction unknown [S] 0.96

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090014|GPIPI_16739887All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1420Open in IMG/M
3300000891|JGI10214J12806_12483171All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia528Open in IMG/M
3300000956|JGI10216J12902_103955073All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia509Open in IMG/M
3300004157|Ga0062590_102388345All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia558Open in IMG/M
3300005093|Ga0062594_102652264All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia554Open in IMG/M
3300005175|Ga0066673_10635853All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia619Open in IMG/M
3300005176|Ga0066679_10546495All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300005179|Ga0066684_10057226All Organisms → cellular organisms → Bacteria2259Open in IMG/M
3300005180|Ga0066685_10921474All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia582Open in IMG/M
3300005186|Ga0066676_10032498All Organisms → cellular organisms → Bacteria2849Open in IMG/M
3300005187|Ga0066675_10042580All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2747Open in IMG/M
3300005293|Ga0065715_10208570All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1317Open in IMG/M
3300005355|Ga0070671_101835826All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia539Open in IMG/M
3300005356|Ga0070674_101000584All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia734Open in IMG/M
3300005364|Ga0070673_102376757All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia504Open in IMG/M
3300005436|Ga0070713_101251530All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia719Open in IMG/M
3300005439|Ga0070711_101385376All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia612Open in IMG/M
3300005450|Ga0066682_10120067All Organisms → cellular organisms → Bacteria1661Open in IMG/M
3300005451|Ga0066681_10773458All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xylella → Xylella fastidiosa581Open in IMG/M
3300005558|Ga0066698_10807238All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia607Open in IMG/M
3300005560|Ga0066670_10680781All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia623Open in IMG/M
3300005566|Ga0066693_10233648All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia724Open in IMG/M
3300005569|Ga0066705_10102801All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP11701Open in IMG/M
3300005569|Ga0066705_10644420All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia645Open in IMG/M
3300005586|Ga0066691_10742644All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia580Open in IMG/M
3300006032|Ga0066696_10748457All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium625Open in IMG/M
3300006175|Ga0070712_100121534All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1965Open in IMG/M
3300006175|Ga0070712_100352798All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1204Open in IMG/M
3300006796|Ga0066665_11030036All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia630Open in IMG/M
3300006796|Ga0066665_11032665All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia629Open in IMG/M
3300006797|Ga0066659_11522923All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300006800|Ga0066660_10132020All Organisms → cellular organisms → Bacteria1823Open in IMG/M
3300006854|Ga0075425_100094294All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium3397Open in IMG/M
3300006954|Ga0079219_10051427All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1777Open in IMG/M
3300007255|Ga0099791_10288556All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia781Open in IMG/M
3300007258|Ga0099793_10384110All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia689Open in IMG/M
3300007822|Ga0104325_123758All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1920Open in IMG/M
3300009137|Ga0066709_102601668All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia678Open in IMG/M
3300009162|Ga0075423_12047051All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia620Open in IMG/M
3300009177|Ga0105248_13419440All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia504Open in IMG/M
3300010304|Ga0134088_10625299All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia537Open in IMG/M
3300010326|Ga0134065_10048859All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1297Open in IMG/M
3300010336|Ga0134071_10380093All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia717Open in IMG/M
3300010364|Ga0134066_10079684All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia910Open in IMG/M
3300012198|Ga0137364_10272424All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1253Open in IMG/M
3300012198|Ga0137364_10617641All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia817Open in IMG/M
3300012198|Ga0137364_10772167All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia726Open in IMG/M
3300012200|Ga0137382_10229043All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1283Open in IMG/M
3300012203|Ga0137399_10781931All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia804Open in IMG/M
3300012209|Ga0137379_11507385All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia573Open in IMG/M
3300012211|Ga0137377_10380633All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1349Open in IMG/M
3300012285|Ga0137370_10336634All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium906Open in IMG/M
3300012354|Ga0137366_11147172All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia532Open in IMG/M
3300012493|Ga0157355_1043960All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia510Open in IMG/M
3300012685|Ga0137397_11180672All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia552Open in IMG/M
3300012917|Ga0137395_10395816All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia989Open in IMG/M
3300012951|Ga0164300_10621648All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia641Open in IMG/M
3300012955|Ga0164298_11457811All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia532Open in IMG/M
3300012957|Ga0164303_10847695All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia634Open in IMG/M
3300012958|Ga0164299_10402286All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia880Open in IMG/M
3300012960|Ga0164301_10652898All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia785Open in IMG/M
3300012975|Ga0134110_10452084All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia577Open in IMG/M
3300013096|Ga0157307_1143562All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia549Open in IMG/M
3300013297|Ga0157378_11137338All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium819Open in IMG/M
3300013308|Ga0157375_12657098All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia598Open in IMG/M
3300014150|Ga0134081_10072368All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1055Open in IMG/M
3300014497|Ga0182008_10104313All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1402Open in IMG/M
3300014969|Ga0157376_10077487All Organisms → cellular organisms → Bacteria2844Open in IMG/M
3300015077|Ga0173483_10781098All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia549Open in IMG/M
3300015356|Ga0134073_10056016All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1070Open in IMG/M
3300015358|Ga0134089_10353224All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia620Open in IMG/M
3300015374|Ga0132255_103783545All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia643Open in IMG/M
3300015374|Ga0132255_104500093All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia591Open in IMG/M
3300015374|Ga0132255_105151932All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia553Open in IMG/M
3300017659|Ga0134083_10227092All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus776Open in IMG/M
3300018028|Ga0184608_10397095All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia599Open in IMG/M
3300018431|Ga0066655_10714070All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia679Open in IMG/M
3300019887|Ga0193729_1131804All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia920Open in IMG/M
3300020004|Ga0193755_1149313All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia710Open in IMG/M
3300021170|Ga0210400_11433419All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia550Open in IMG/M
3300021178|Ga0210408_10465186All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1006Open in IMG/M
3300021344|Ga0193719_10021489All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2760Open in IMG/M
3300021411|Ga0193709_1049310All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia982Open in IMG/M
3300021411|Ga0193709_1059811All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia875Open in IMG/M
3300021418|Ga0193695_1046517All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia942Open in IMG/M
3300022756|Ga0222622_11351840All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia524Open in IMG/M
3300025905|Ga0207685_10086220All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1311Open in IMG/M
3300025905|Ga0207685_10538279All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia620Open in IMG/M
3300025915|Ga0207693_10112667All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2134Open in IMG/M
3300025916|Ga0207663_11165457All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia620Open in IMG/M
3300025929|Ga0207664_11348189All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia633Open in IMG/M
3300025936|Ga0207670_11207916All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia640Open in IMG/M
3300026318|Ga0209471_1325333All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia509Open in IMG/M
3300026325|Ga0209152_10170895All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia817Open in IMG/M
3300026333|Ga0209158_1329493All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia528Open in IMG/M
3300027655|Ga0209388_1144495All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia673Open in IMG/M
3300028715|Ga0307313_10234008All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia571Open in IMG/M
3300030844|Ga0075377_11453398All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia533Open in IMG/M
3300031057|Ga0170834_106816066All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1107Open in IMG/M
3300031231|Ga0170824_119477424All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia817Open in IMG/M
3300031474|Ga0170818_110417531All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia516Open in IMG/M
3300031474|Ga0170818_111417543All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia897Open in IMG/M
3300031962|Ga0307479_11195960All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia724Open in IMG/M
3300033412|Ga0310810_11439062All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia520Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil23.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil15.38%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil13.46%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil8.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.69%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.88%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.88%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.92%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.92%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.96%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.96%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.96%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.96%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.96%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.96%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007822Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012493Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610EnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300013096Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021411Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2EnvironmentalOpen in IMG/M
3300021418Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300030844Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_012435502088090014SoilRFDEATSSASVLTQLIFFYSNDNEGLLADTGLPSLMLSNTVTIQENPSGPTIYTPGPGQPGLSTDSNLGDSFLIFSTPDTGSTLLMLGAAIGGFVFLRWKMPAV
JGI10214J12806_1248317113300000891SoilYSNDHGHLLADTGLPSLMQSNTVTIQENPSGPTIYTPTAGQPGFSTDSPLGNSFRIFSTPDTGSTLLMLGAVTAGLVFLRWKMLVL*
JGI10216J12902_10395507313300000956SoilGVIPLPGTLMSDTGPGGLASALTFTAHPLVNPFPEGDVVLLDAGGHVSDILRFNPATSSSSGLTQLIFFYSNDHGGLLADTGLPSGLYDNTVTIQESQSGSTIYTPTAGQPGFSTDSPLGDSFHIFSAPDTGSTLLMLGAATAGFVFLRWKMPAV*
Ga0062590_10238834513300004157SoilVVLLDASGHVSDILRFDLETNPGPGSPQLIFFYSNDHGGLLADTGLPSSMFINTVTIQENPSGPTIYTPTEGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV*
Ga0062594_10265226413300005093SoilVSDILRFNPATSSSSGLTQLIFFYSNDHGGLLADTGLPSGLYDNRVTIQESQSGPTIYTPTAGQPGFSTDSPLGDSFHIFSAPDTGSTLLMLGAAIAGLVFLRWKLLAV*
Ga0066673_1063585313300005175SoilVSDILRFDEATSSPSGLTQLIFFYSNDHEGLLADTGLPSVMLSNTVTIQEDPSGLTIYTPAPGQPGLSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMLAV*
Ga0066679_1054649533300005176SoilTSSASGLTQLIFFYSNDHGVLLADTGLPSLMLSNTVTIQENPSGPTIYIPAAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0066684_1005722613300005179SoilNVSDVLRFDRETNPGPGSPQLIFFYSNDHRGLLADTGLPSSMFSNTVIIQENPSGPTIYTPKAGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAGFVFLRWKMVAV*
Ga0066685_1092147423300005180SoilIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPSGPTIYTPREGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVLLRWKMPAV*
Ga0066676_1003249853300005186SoilFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENASGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLILGAASAGFVFLRWKMPAV*
Ga0066675_1004258013300005187SoilVSDVLRFDLETNPGPGSPQLIFFYSNDHRGLLADTGLPSSMFSNTVIIQENPSGPTIYTPKAGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAGFVFLRWKMVAV*
Ga0065715_1020857023300005293Miscanthus RhizospherePGPGGLLSALAFTAHPQANPFPAGDVVLLDASGNISDILRFDPETNPGPGAPQLIFFYSNDDKGLLADTGLPSSMFTNTVTIQENPSGPTIYTPTEGQPGFSSDSPLGDSFRIFSTPDTGSTLVMLGAAIAGFVFLRWKMPAV*
Ga0070671_10183582613300005355Switchgrass RhizosphereALAFTAHPQVNPFPEGDVVLLDASGHVSDILRFDPETSPGPGAPQLIFFYSNDHAGLLADTGLPSSMFSNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGNSFLIFSAPDTGSTLLMLGAAVAGFMFLRWKMPAV*
Ga0070674_10100058413300005356Miscanthus RhizosphereLDASGHISDILRFDPATGSAAPFTQLIFFYSNDHGGLLADTGLPSSMFSNTVTIRENPSGPTIYTPGPGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAVAVLLILRGKLLTV*
Ga0070673_10237675713300005364Switchgrass RhizospherePETNPGPGSPQLIFFYSNDHAGLLADTGLPSSMFSNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGNSFLIFSAPDTGSTLLMLGAAVAGFMFLRWKMPAV*
Ga0070713_10125153013300005436Corn, Switchgrass And Miscanthus RhizosphereISINLLADTGLPSGRYDNTVTIQESQSGPTIYTPTAGQRGFSTDSPFGDSFHIFSTPDTGSTLLMLGAAVAALLILRGKLLTV*
Ga0070711_10138537613300005439Corn, Switchgrass And Miscanthus RhizosphereQLIFFYSNDHGGLLADTGLPSSMFTNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAATAGLVFLRWKMLAV*
Ga0066682_1012006733300005450SoilSPAPGAPQLIFFYSNDHAGRLADTGLPSLMLSNTVTIQENPSGPTIYTPIAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGATIAGFVFLRWKMPAV*
Ga0066681_1077345813300005451SoilPGGLASAVTFTAHPQVAPFPVGDVVLLDASGHVSDILRFNPATTGSSGLTQLIFFYSNDHGGLLADTGLPSLMYGNTVNIQESQSGATTYTPTAGQPGFSSDTPLGDTFHIFSTPDTGSTLLMFGAGVGFLALVRRKILPAAN*
Ga0066698_1080723823300005558SoilFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPSGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0066670_1068078113300005560SoilFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENAYGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLILGAASAGFVFLRWKMPAV*
Ga0066693_1023364823300005566SoilSALAFTAHPQLNPLVVGDVLFLDASGHVSDMLRFNPATSSASGLTQLIFFYSNDHGGLLADTGLPSVMLSNTVTIQEDPSGLTIYTPAPGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0066705_1010280113300005569SoilASGHVSDILRFDEATSSPSGLTQLIFFYSNDHGGLLADTGLPSVMLSNTVTIQENQSGPTIYTPVAGQPGLSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMLAV*
Ga0066705_1064442013300005569SoilLDASGHVSDILRFDPATSSASGLTQLIFFYSNDNGGLLADTGLPSLMYGNTVTFQENPFGPSIYTPAAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAVFGLSLLRRKRLVRRLT*
Ga0066691_1074264413300005586SoilVNPLVVGDVVLLDASGHVSDILRFDEATSSASGLTQLIFFYSNDHGGLLADTGLPSLMLSNTITIQENPSGPTVYIPAAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0066696_1074845713300006032SoilLRFDEATSSASGLTQLIFFYSNDHGGLLADTGLPSLMLSNTITIQENPSGPTIYTPVAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAGIGGFVFLRWKMLAV*
Ga0070712_10012153423300006175Corn, Switchgrass And Miscanthus RhizosphereSNDHGGLLADTGLPSGMYDNTVTIQESQSGPTIYTPTAGQPGFSTDSPFGDSFHIFSTPDTGSTLLMLGAATAGLAFLRRRLLRAVLD*
Ga0070712_10035279823300006175Corn, Switchgrass And Miscanthus RhizosphereLTQLIFFYSNDHGGLLADRGLPSLMSSNTITIQENPSGPTIYTPVAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAATAGLMFLRWKMLAV*
Ga0066665_1103003623300006796SoilRFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPSGPTIYTPGEGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0066665_1103266523300006796SoilRFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENASGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLILGAASAGFVFLRWKMPAV*
Ga0066659_1152292323300006797SoilDASGHVSDSLRFDTATGASGLTQLIFFYSNDHGGLLADTGLPSSMLNNTITIQENPSGPTIYTPGEGQPGLSTDSPLGDSFLIFSTPDTGSTLLMLGAGIVGFVFLRWKMLAV*
Ga0066660_1013202013300006800SoilPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPAGPTIYIPGEGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0075425_10009429413300006854Populus RhizosphereVLLDAGGHVSDILRFDEATRSALGLTQLIFFYSNDHEGLLADTGLPSSMFTNTVTIQENLSGPTIYTPGEGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLAAATAGLVFLRWKMLAV*
Ga0079219_1005142713300006954Agricultural SoilPQANPFPAGDVVLLDASGNISDILRFDPETSPGPGAPQLIFFYSNDDGGLLADTGLPSSMFTNTVTIQENPSGPTIYTPTAGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0099791_1028855623300007255Vadose Zone SoilHVSDILRFDPETSPGPGSPQLIFFYSNDHGGLLADTGLPSQMFTNTVTIQENPSGPTIYTPVAGQPGFSTDSPLGNSFRIFSTPDTGSTVLMLGAATAGLVFLRWKMLAV*
Ga0099793_1038411023300007258Vadose Zone SoilLAFTAHPLVAPFPEGDVVLLDASGHVSDILRFDPETSPGPGSPQLIFFYSNDHGGLLADTGLPSSMFSNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGNSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAVRPPHMRNQVNHLKRAPEVKTATRRQQSFST*
Ga0104325_12375823300007822SoilDASGHVSDILRFNPSTSSSSGFTQLIFFYSNDHGGLLADTGLPSLMYGNTVTIQESQSGPTIYTPTSGQPGFSSDSPLGDTYHIFSTPDTGSTLLMLGIAAAGLALLRRNVYCGDLELGS
Ga0066709_10260166813300009137Grasslands SoilNGHVSDILRFDTETNPGPGSPQLIFFYSNDHGGLLAYTGLPSSMFTNTVTIQENPSGPTIYTPKAGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAGFVFLRWKMVAV*
Ga0075423_1204705113300009162Populus RhizosphereSDILRFNPETNPGPGAPQLIFFYSNNHRGLLADTGLPSSRFSNTVIIQENPSGPTIYKPTEGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV*
Ga0105248_1341944013300009177Switchgrass RhizosphereDHGGLLADTGLPSGLYDNTVTIQESQSGPTIYTPTAGQPGFSTDSPLGDSFHIFSAPDTGSTLLMLGAAAAGLVFLRRKMLAV*
Ga0134088_1062529913300010304Grasslands SoilLETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENASGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0134065_1004885913300010326Grasslands SoilNDHAGLLADTGLPSLMFSNTVTIQENASGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVLLRWKIPAV*
Ga0134071_1038009313300010336Grasslands SoilQLIFFYSNDHGGLLADTGLPSSMVNNTVTIQENPSGPTIYTPGEGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0134066_1007968423300010364Grasslands SoilSDPGPGGLMSTLAFTAHPQAAPFPEGDVVLLDAHGHVSDILRFDTETNPGPGSPQLIFFYSNDHRGLLADTGLPSSMFSNTVIIQENPSGPTIYTPKAGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAGFVFLRWKMVAV*
Ga0137364_1027242413300012198Vadose Zone SoilDPGPGGLTSALAFTAHPLARAFPEGDVVLMDANGHVSDILRFNPEENPGPGSAQLIFFYSNDHGGLLADTGLPSSMFSNTVIIQENPSGPTIYIPVAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV*
Ga0137364_1061764113300012198Vadose Zone SoilLTQLIFFYSKDHGGPLADTSLPSGMYDNTVTIQESQSGPTTYIPTAGQPGLSTDSFLGDSFLIFSTPDTGSTLLMLGAAIAGFV
Ga0137364_1077216723300012198Vadose Zone SoilTDGVITSSPAALTRIPGTGGQVNALDFTAHPLVNTLVVGDVVLLDASGHVSDILRFDEATSSASGLTQLIFFYSNDHGGLLADTGLPSLMLSNTITIQENPSGPTIYTPVAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMLAV*
Ga0137382_1022904323300012200Vadose Zone SoilGYVSDILRFDPATSSASGLTQLIFFYSNDHGGLLADTGLPSLMLGNTVTIQENPSGPTIYTPGEGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0137399_1078193113300012203Vadose Zone SoilPGPGGLSSALAFTAHPQVNPFPEGDVVLLDASGHVSDILRFDPETSPAPGAPQLIFFYSNHHGGLLADTGLPSSMFSNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGLVLLRWKMVAV*
Ga0137379_1150738513300012209Vadose Zone SoilVLLDASGHVSDILRFDPATSSAGLTQLIFFYSNDHGGLLADTGLPSLMLSNTITIQENPSGPTIYTPAAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMLAV*
Ga0137377_1038063323300012211Vadose Zone SoilVGDVVLLDASGHVSDILRFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPSGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0137370_1033663413300012285Vadose Zone SoilLETNPGPGSPQLIFFYSNDHGGLLADTGLPSSTFSNTVIIHENPTGPTIYTPKAGQPGFSSDSSLGNSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV*
Ga0137366_1114717223300012354Vadose Zone SoilGDVVLLDASGHVSDILRFDEATSSASGLTQLIFFYSNDHRGLLADTGLPSLMLSNTITIQENPSGPTIYTPVAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMLAV
Ga0157355_104396013300012493Unplanted SoilQGHLLADTGLPTLMQTNTVTIQENPSGPTIYTPTAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAAAGLVFLRRKMLAV*
Ga0137397_1118067213300012685Vadose Zone SoilEGDVVLLDASGHVSDILRFDPETSPGPGSPQLIFFYSNDHGGLLADTGLPSQMFTNTVTIQENPSGPTIYTPVAGQPGFSTDSPLGNSFRIFSTPDTGSTVLMLGAATAGLVFLRWKMLAV*
Ga0137395_1039581623300012917Vadose Zone SoilVNHFPVGDVVLLDASGHVSDILRFNPATSSASSLTQLIFFYSNDHGGPLADTSLPSGMYDNTVTIQESQSGPTIYTPVAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGLVLLRWKMVAA*
Ga0164300_1062164813300012951SoilARAFPEGDVVLMDANGDVSDILRFNPETNPGPGAPQLIFFYSNDHAGLLADTGLPSSMFSNTVTIQENPSGETIYTPLPGQPGFSTDSDLGNSFLIFSSPDTGSTLLMLGAAIAGLVLLRWKMVAV*
Ga0164298_1145781113300012955SoilFPEGDVVLLDASGHVSDILRFDLEQNPGPGSPQLIFFYSNDHAGLLADTGLPSSMFSNTVTIQENPSGETIYTPLPVQPGFSSDSPLGDSFLIFSSPDTGSTILMLGAAIAGLVFLRWKMVAV*
Ga0164303_1084769523300012957SoilSDILRFDLEQNPGPGSPQLIFFYSNDHGGLLADTGLPSLMHSNTVTIQENPSGPTIYTPMAGQPGFSTDSTLGDSFLIFSTPDTGSTLLMLGAAIAAFVFLRWKMPAV*
Ga0164299_1040228613300012958SoilGLSSALAFTAHPRVAPGFPEGDVVLLDASGHVSDILRFDLEKDPGPGLPQLIFFYSNDHAGLLADTGLPSSMFSNTVTIQENPSGETIYTPLPGQPGFSSDSPLGDSFLIFSSPDTGSTILMLGAAIAGLVFLRWKMVAV*
Ga0164301_1065289813300012960SoilDVSDILRFDSATSSPLGLTQLIFFYSNDHGGLLADTGLPSSMFSNTVIIQESSSGPTIYKPTEGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV*
Ga0134110_1045208423300012975Grasslands SoilPGALTTDPGPGGLLSALAFTAHPQVNPLVAGDVVLLDASGHVSDILRFDEATSSPSGLTQLIFFYSNDHGGLLADTGPPSLMLSNTITIQENPSGATIYTPVAGQPGLSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMLAV*
Ga0157307_114356213300013096SoilVPIPGALMSDPGPGGLASALAFTTHPQVNPFPAGDVVLLDASGHVSDILRIDPATGSAAPFTQLIFFYSNDHGHLLADAGLPSLMQSNTATIQENPSGPTIYTPTAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAVTAGLVFLRWKMLVL*
Ga0157378_1113733823300013297Miscanthus RhizosphereHAGLLADTGLPSSMFSNTVIIQENPSGPTIYTLVAGQPGFSTDSPLGNSFLIFSAPDTGSTLLMLGAAVAGFMFLRWKMPAV*
Ga0157375_1265709813300013308Miscanthus RhizosphereDNGHLLADTGLPSLMQSNTVTIQENPSGPTIYTPTAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAAAGLVFLRRKMLAV*
Ga0134081_1007236813300014150Grasslands SoilGAVRQVGDVVLLDAKGRVSDILRFDEATSSPSGLTQLIFFYSNDHGGLLADTGLPSLMLSNTITIQENPSGPTIYTPVAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0182008_1010431313300014497RhizosphereQLIFFYSNDHGVLLADTGLPSSMFTNTVTIQENPSGPTIYTPAAGQPGFSSDSPLGDSFRIFSTPDTGSTLLLLGAAIAGFVLLRWKLPAV*
Ga0157376_1007748713300014969Miscanthus RhizosphereGLASALTFTAHPLVNPFPEGDVVLLDAGGHVSDILRFNPATSSSSGLTQLIFFYSNDHGGLLADTGLPSGLYDNTVTIQESQSGPTIYTPNAGQPGFSTDSPLGDSFHIFSAPDTGSTLLMLGAAIAGLVFLRWKLLAV*
Ga0173483_1078109813300015077SoilVPIPGALMSDPGPGGLASALAFTTHPQVNPFPAGDVVLLDASGHVSDILRIDPATGSAAPFTQLIFFYSNDHGHLLADAGLPSLMQSNTATIQENPSGPTIYTPTAGQPGFSTDSPLGNSFRIFSTPDTGSTLLMLGAVTAGLVFLRWKMLVL*
Ga0134073_1005601633300015356Grasslands SoilGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPSGPTIYTPAAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0134089_1035322413300015358Grasslands SoilHPQVAPFPVGDVELLDASGHVSDILRFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENAYGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLILGAASAGFVFLRWKMPAV*
Ga0132255_10378354513300015374Arabidopsis RhizosphereIPVPGMLMSDTGPGGLTSALAFTAHPLARAFPEGDVVLMDANGDVSDILRFNPETNPGPGAPQLIFFYSNDHRGLLADTGLPSSMYDNTVIIQENPSGPTIYTPKAGQPGFSSDSPLGNSFRIFSTPDAGSTLLMLGAAVAALLILRGKLLTV*
Ga0132255_10450009313300015374Arabidopsis RhizosphereNDDRGLLADTGLPSSMFTNTVTIQENPSGPTIYTPTEGQPGFSSDSHLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV*
Ga0132255_10515193213300015374Arabidopsis RhizosphereAHPQANPFPAGDVVLLDASGNISDILRFDPETNPGPGAPQLIFFYSNDDKGLLADTGLPSSMFTNTVTIQENPSGPTIYTPTEGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAITGFVFLRWKMPAV*
Ga0134083_1022709213300017659Grasslands SoilGASGLTQLIFFYSNDQGGLPADTGLPSSMLNNTITIQENPSGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLILGAASAGFVFLRWKMPAV
Ga0184608_1039709513300018028Groundwater SedimentPGPGGLLNALAFTAHPQVNPLVVGDVVLLDASGHVSDILRFDEATSSPSGLTQLIFFYSNDHGGLLADTGLPSLMLSNTVTIQENPSGPTIYAPVAGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV
Ga0066655_1071407013300018431Grasslands SoilASALAFTAHPQVAPFPVGDVVLLDASGHVSDILRFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENASGPTIYTPGEGQPGFSTDSPLGDSFLIFSTPDTGSTLLILGAASAGFVFLRWKMPAV
Ga0193729_113180413300019887SoilVSDILRFDEATSSPSGLTQLIFFYSNDHGGLLADTGLPSLMLSNTVTIQENPSGPTIYTPGEGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV
Ga0193755_114931313300020004SoilPGGLASALTFTAHPLVNPFPEGDVVLLDASGHVSDILRFNPATISASGLTQLIFFYSNDHGGLLADTGLPSLMYDNTVTIQESQSGPTIYTPTAGQPGFSSDSPLGDSFRIFSTPDTGSALLMLGAATAGLVFLRWKMLGV
Ga0210400_1143341913300021170SoilGGLASALTFTAHPLVNPFPEGDVVLLDAGGHVSDILRFNPATSSSSGLTQLIFFYSNDHGGLLADTGLPSGLYDNTVTIQESQSGPTIYTPTAGQPGFSTDSPLGDSFHIFSAPDTGSTLLMLGAAIAGFVFLRWKMPAV
Ga0210408_1046518613300021178SoilLLDASGHVSDILRFDPETSPRPGSPQLIFFYSNDHGGLLADTGLPSSMFSNTVTIQESQSGPTIYTPTAGQPGFSIDSPLGNSFRIFSTPDTGSTLLMLGAATAGLVFLRWKMPVV
Ga0193719_1002148913300021344SoilPGPGGLASALAFTAHPQVAPFPEGDVVLMDASGHVSDILRFDEANPDGSQLIFFYSNDHGGLLADTGLPSSMFNNTVIIQENASGPTIYTPTEGQPGFSTDSPLHNSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV
Ga0193709_104931033300021411SoilPGPGGLSSALAFTAHPQANPFPVGDVVLLDASGHVSDILRFDPETNPAPGAPQLIFFYSNDHAGRLADTGLPSLMHSNTVTIQENPSGPTIYTPIAGQPGFSTDSPLGDSFLIFSTPDTGSTLLMLGAAIAGLVFLRWKKLAV
Ga0193709_105981123300021411SoilCGLLADTGLPSLMYDNTVTIQESQSGPTIYTPTAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAATAGLVFLRWKMLGV
Ga0193695_104651723300021418SoilGLASALTFTAHPQLNPFPVGDVVLLDAGGHVSDILRFNPATTGSSGLTQLIFFYSNDHGGLLADTGLPSGMYDNTVTIQESQSGPTTYIPTAGQPGLSTDSFLGNSFLIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV
Ga0222622_1135184023300022756Groundwater SedimentDPGPGGLMSALAFTAHPLARAFPEGDVVLTDANGDVSDILRFDLEENPGAGSPQLIFFYSNDHGGLLADTGLPSSTFSNTVIIQESSSGPTIYTPTEGQPGFSSDSPLHNSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV
Ga0207685_1008622013300025905Corn, Switchgrass And Miscanthus RhizosphereLQGTLTSDPGPGGLLNALAFTAHPQVNPFPEGDVVLLDASGHVSDILRFDLETNPGPGSPQLIFFYSNDHGGLLADTGLPSSMFTNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAATAGLVFLRWKMLAV
Ga0207685_1053827923300025905Corn, Switchgrass And Miscanthus RhizospherePQLIFFYSNDHAGLLADTGLPSSMFSNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGNSFLIFSAPDTGSTLLMLGAAVAGFMFLRWKMPAV
Ga0207693_1011266723300025915Corn, Switchgrass And Miscanthus RhizosphereLTQLIFFYSNDHGGLLADRGLPSLMSSNTITIQENPSGPTIYTPVAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAATAGLMFLRWKMLAV
Ga0207663_1116545713300025916Corn, Switchgrass And Miscanthus RhizosphereNPGPGSPQLIFFYSNDHGGLLADTGLPSSMFTNTVIIQENPSGPTIYTPVAGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAATAGLVFLRWKMLAV
Ga0207664_1134818913300025929Agricultural SoilFPLTGMLMSDPGPGGLSSALAFTAHPRVAPGFPEGDVVLLDASGHVSDILRFDPETNPGPGSPQLIFFYSNDHGGLLADTGLPSSMFSNTVTIRENPSGPTIYTPGPGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGLVFLRWKMVAVRPPQMRNQVNHLKRAPEVKTATRRQQSFST
Ga0207670_1120791613300025936Switchgrass RhizosphereKDRDILRFNPATSSSSGLTQLIFFYSNDHGGLLADTGLPSGLYDNRVTIQESQSGPTIYTPTAGQPGFSTDSPLGDSFHIFSAPDTGSTLLMLGAAIAGLVFLRWKLLAV
Ga0209471_132533313300026318SoilRFDEATSSPSGLTQLIFFYSNDHGGLLADTGLPSLMLSNTVTIQEDPSGLTIYTPAPGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV
Ga0209152_1017089513300026325SoilPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPSGPTIYTPGEGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV
Ga0209158_132949313300026333SoilGPGGLASALAFTAHPLAGPFPEGDVVLLDASGHVSDILRFDPETSPAPGAPQLIFFYSNDHAGLLADTGLPSLMFSNTVTIQENPAGPTIYTPGEGQPGFSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMPAV
Ga0209388_114449513300027655Vadose Zone SoilLIFFYSNDHGGLLADTGLPSQMFTNTVTIQENPSGPTIYTPVAGQPGFSTDSPLGNSFRIFSTPDTGSTVLMLGAATAGLVFLRWKMLAV
Ga0307313_1023400823300028715SoilDILRFDEATRSASGLTQLIFFYSNDHGGLLADTGLPSLMLSNTVTIQENPSGPTIYTPAAGQPGLSTDSPLGDSFRIFSTPDTGSTLLMLGAAIAGFVFLRWKMVAV
Ga0075377_1145339813300030844SoilNLHLPPLFGGGVIPLTGVLMSDTGPGGLTSALAFTAHPLVAPGFPFGDVVLMDASGHVSDILRFVPEENPGARAPQLIFFYSNDHRGLLADTGLPSLMYENRVTIQENPTGPTIYTPKAGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV
Ga0170834_10681606623300031057Forest SoilFPEGDVVLLDASGHVSDILRFDLEQNPGPMSPQLIFFYSNDHAGLLADTGLPSSMFSNTVTIQENPSGPTIYTPVAGQPGFSSDSPLGNSFLIFSSPDTGSTLLMLGAAIAGLVLLRWKMVAV
Ga0170824_11947742423300031231Forest SoilLAFTAHPQAAPFPEGDVVLMDANGHVSDILRFDTETNPGPGSPQLIFFYSNDHRGLLADTGLPSSRFSNTVIIQENPTGPTIYTPTEGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV
Ga0170818_11041753113300031474Forest SoilLSSALAFTAHPQAAPFPEGDVVLLDASGDVSDILRFDLETNPGPGAPQLIFFYSNDHAGRLADTGLPSLMLSNTVTIQENPSGPTIYTPIAGQPGFSTDSPLGDSFLIFSSPDTGSTLLILGAAIAGLVLLRWKMVAV
Ga0170818_11141754323300031474Forest SoilPLFGGGVIPLTGTLTFDTGPGGLASALAFTAHPLRAPFPEGDVVLLDANGDVSDILRFDTETTPGPGMPQLIFFYSNDHRGLLADTGLPTSMFSNTVTIQENPTGPTIYTPKAGQPGFSSDSPLGNSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV
Ga0307479_1119596013300031962Hardwood Forest SoilGLTQLIFFYSNDHGGLLADTGLPSLMYDNRVTIQESQSGPTIYTPTAGQPGFSTDSPLGNSFRIFSTPDTGSTLFMLGAATAGLVFLRWKMPAV
Ga0310810_1143906213300033412SoilTLMSDPGPGGLTSALAFTAHPLVAPFPEGDVVLLDASGHVSDILRFVPETNPGPREPQLIFFYSNDHGGLLADTGLPSSRFSNTVIIQENPSGPTIYTPTEGQPGFSSDSPLGDSFRIFSTPDTGSTLLMLGAAVAALLILRGKLLTV

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.