NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F097826

Metagenome Family F097826

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097826
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 41 residues
Representative Sequence MNQEMLDRIVAVTTAEGTLAHRMGIKILSASGSEVVATMPV
Number of Associated Samples 95
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 97.12 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 94.23 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (65.385 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.961 % of family members)
Environment Ontology (ENVO) Unclassified
(24.038 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.231 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.19%    β-sheet: 13.04%    Coil/Unstructured: 63.77%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF01263Aldose_epim 64.42
PF027395_3_exonuc_N 9.62
PF00575S1 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0676D-hexose-6-phosphate mutarotaseCarbohydrate transport and metabolism [G] 64.42
COG2017Galactose mutarotase or related enzymeCarbohydrate transport and metabolism [G] 64.42
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 9.62


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.38 %
All OrganismsrootAll Organisms34.62 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003505|JGIcombinedJ51221_10144626All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia959Open in IMG/M
3300004092|Ga0062389_101021019All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1012Open in IMG/M
3300005367|Ga0070667_100342254All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1353Open in IMG/M
3300005434|Ga0070709_10175617All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1500Open in IMG/M
3300005436|Ga0070713_100427017All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1241Open in IMG/M
3300005445|Ga0070708_102085029All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia524Open in IMG/M
3300005544|Ga0070686_100682397All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia817Open in IMG/M
3300005564|Ga0070664_101143506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia734Open in IMG/M
3300005764|Ga0066903_108327586All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia530Open in IMG/M
3300005983|Ga0081540_1224732All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria666Open in IMG/M
3300006175|Ga0070712_100124676All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1943Open in IMG/M
3300006804|Ga0079221_10621183Not Available734Open in IMG/M
3300009520|Ga0116214_1178716All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300009521|Ga0116222_1228951Not Available801Open in IMG/M
3300009521|Ga0116222_1318828Not Available672Open in IMG/M
3300009524|Ga0116225_1417921Not Available596Open in IMG/M
3300009700|Ga0116217_10135726Not Available1654Open in IMG/M
3300010359|Ga0126376_12285848Not Available586Open in IMG/M
3300010376|Ga0126381_101341931Not Available1034Open in IMG/M
3300010379|Ga0136449_101397665Not Available1081Open in IMG/M
3300010397|Ga0134124_10179264All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1910Open in IMG/M
3300010398|Ga0126383_13022630Not Available549Open in IMG/M
3300010399|Ga0134127_11129597Not Available848Open in IMG/M
3300012207|Ga0137381_11262267Not Available632Open in IMG/M
3300012209|Ga0137379_10818029Not Available836Open in IMG/M
3300012211|Ga0137377_10150028All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2233Open in IMG/M
3300012349|Ga0137387_10154128All Organisms → cellular organisms → Bacteria1637Open in IMG/M
3300012357|Ga0137384_10735559Not Available800Open in IMG/M
3300012924|Ga0137413_10728648Not Available755Open in IMG/M
3300012957|Ga0164303_10040788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1988Open in IMG/M
3300012984|Ga0164309_10400988Not Available1023Open in IMG/M
3300013100|Ga0157373_10969478Not Available633Open in IMG/M
3300013307|Ga0157372_11408901Not Available803Open in IMG/M
3300013308|Ga0157375_10921808Not Available1017Open in IMG/M
3300016294|Ga0182041_11428897Not Available635Open in IMG/M
3300016422|Ga0182039_10130223Not Available1914Open in IMG/M
3300016445|Ga0182038_10370509Not Available1192Open in IMG/M
3300017657|Ga0134074_1331028Not Available559Open in IMG/M
3300017821|Ga0187812_1132005All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300017822|Ga0187802_10136503All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300017932|Ga0187814_10399981Not Available535Open in IMG/M
3300017948|Ga0187847_10690540Not Available574Open in IMG/M
3300017959|Ga0187779_11306460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria514Open in IMG/M
3300017973|Ga0187780_10304426Not Available1121Open in IMG/M
3300017999|Ga0187767_10214901Not Available615Open in IMG/M
3300019890|Ga0193728_1140137Not Available1075Open in IMG/M
3300020582|Ga0210395_10533889Not Available882Open in IMG/M
3300021402|Ga0210385_11175326Not Available589Open in IMG/M
3300021405|Ga0210387_11061134Not Available708Open in IMG/M
3300021478|Ga0210402_10281982Not Available1536Open in IMG/M
3300021559|Ga0210409_10476600Not Available1110Open in IMG/M
3300024331|Ga0247668_1039040Not Available971Open in IMG/M
3300025898|Ga0207692_10644112All Organisms → cellular organisms → Bacteria684Open in IMG/M
3300025915|Ga0207693_10485270All Organisms → cellular organisms → Bacteria965Open in IMG/M
3300025915|Ga0207693_10509558Not Available939Open in IMG/M
3300025928|Ga0207700_10182712Not Available1757Open in IMG/M
3300025934|Ga0207686_10587290Not Available875Open in IMG/M
3300025934|Ga0207686_10692822All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300026067|Ga0207678_10012285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales7519Open in IMG/M
3300026088|Ga0207641_10152088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2096Open in IMG/M
3300026088|Ga0207641_10448498Not Available1246Open in IMG/M
3300026095|Ga0207676_10608351Not Available1050Open in IMG/M
3300026489|Ga0257160_1083050Not Available572Open in IMG/M
3300027070|Ga0208365_1035215Not Available663Open in IMG/M
3300027401|Ga0208637_1035933Not Available574Open in IMG/M
3300027680|Ga0207826_1003752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales4178Open in IMG/M
3300027826|Ga0209060_10323096Not Available704Open in IMG/M
3300027829|Ga0209773_10160699Not Available936Open in IMG/M
3300027855|Ga0209693_10124484All Organisms → cellular organisms → Bacteria → Proteobacteria1275Open in IMG/M
3300027884|Ga0209275_10825976Not Available534Open in IMG/M
3300028379|Ga0268266_10389728Not Available1315Open in IMG/M
3300029882|Ga0311368_10183722Not Available1673Open in IMG/M
3300030494|Ga0310037_10020883All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3163Open in IMG/M
3300030706|Ga0310039_10123606Not Available1064Open in IMG/M
3300030707|Ga0310038_10160895Not Available1106Open in IMG/M
3300031543|Ga0318516_10443267Not Available747Open in IMG/M
3300031545|Ga0318541_10263866Not Available958Open in IMG/M
3300031561|Ga0318528_10219440Not Available1019Open in IMG/M
3300031679|Ga0318561_10527317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura citrea650Open in IMG/M
3300031680|Ga0318574_10932566Not Available509Open in IMG/M
3300031708|Ga0310686_113828523Not Available567Open in IMG/M
3300031751|Ga0318494_10649837Not Available617Open in IMG/M
3300031769|Ga0318526_10178306Not Available867Open in IMG/M
3300031769|Ga0318526_10315144Not Available640Open in IMG/M
3300031770|Ga0318521_10437055All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura citrea782Open in IMG/M
3300031770|Ga0318521_10861926Not Available553Open in IMG/M
3300031792|Ga0318529_10267714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura citrea795Open in IMG/M
3300031792|Ga0318529_10334430Not Available705Open in IMG/M
3300031797|Ga0318550_10276494All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300031835|Ga0318517_10197145Not Available907Open in IMG/M
3300031845|Ga0318511_10238128All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300031860|Ga0318495_10210359All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura citrea875Open in IMG/M
3300031942|Ga0310916_10421754Not Available1136Open in IMG/M
3300031981|Ga0318531_10338578Not Available680Open in IMG/M
3300032001|Ga0306922_10956437All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura citrea886Open in IMG/M
3300032059|Ga0318533_11442076Not Available503Open in IMG/M
3300032089|Ga0318525_10365464Not Available740Open in IMG/M
3300032160|Ga0311301_10455644Not Available1923Open in IMG/M
3300032160|Ga0311301_10608695All Organisms → cellular organisms → Bacteria1571Open in IMG/M
3300032783|Ga0335079_10538505Not Available1240Open in IMG/M
3300032805|Ga0335078_11177140Not Available888Open in IMG/M
3300032805|Ga0335078_12043967Not Available611Open in IMG/M
3300032954|Ga0335083_10127913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2441Open in IMG/M
3300033134|Ga0335073_10741375Not Available1065Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.96%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil10.58%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.69%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.77%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.85%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.88%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.88%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.88%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.92%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.92%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.92%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.92%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.96%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.96%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.96%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017821Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024331Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026489Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-AEnvironmentalOpen in IMG/M
3300027070Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)EnvironmentalOpen in IMG/M
3300027401Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027826Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030494Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)EnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1014462613300003505Forest SoilMDQEILDRIVAFTVAEGTLADRMGIKIRSASASQVVGTMPV
Ga0062389_10102101913300004092Bog Forest SoilMNQEILDKMMATTVADGTLAWRMGVKILSASATEVVATMPVAGNIQPY
Ga0070667_10034225413300005367Switchgrass RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMPVAG
Ga0070709_1017561713300005434Corn, Switchgrass And Miscanthus RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMPVA
Ga0070713_10042701713300005436Corn, Switchgrass And Miscanthus RhizosphereMDQHLLDRVMAATTAEGTLAHRMGITIVSASGTEVVATMPVAG
Ga0070708_10208502913300005445Corn, Switchgrass And Miscanthus RhizosphereMNQEMLDRIVAVTTAEGTLAHRMGIKVQSASGSEVVATMPVAG
Ga0070686_10068239723300005544Switchgrass RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMP
Ga0070664_10114350623300005564Corn RhizosphereMDQDLLDRAMAATTAEGTLAHRMGITIVSASGTEVVATMPVAGNTQ
Ga0066903_10832758623300005764Tropical Forest SoilMDQEMLDRVVAVTTAEGTLAHRMGIRILSASGSEVVATMPVA
Ga0081540_122473213300005983Tabebuia Heterophylla RhizosphereMNQEMLDRIVAVTTVEGTLAHRMGIRILSASGSEVVATMPVAGN
Ga0070712_10012467613300006175Corn, Switchgrass And Miscanthus RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATM
Ga0079221_1062118313300006804Agricultural SoilMDQEMLDRVVAVTTAEGTLAHRMGIRILSASASEVV
Ga0116214_117871613300009520Peatlands SoilMDQEMLDRIIAVTTAEGTLAHSMGIKILSASGTEVVAT
Ga0116222_122895123300009521Peatlands SoilMDQEMLDRIIAVTIAEGTLAHSMGIKILSASGTEVVATMPVAGN
Ga0116222_131882823300009521Peatlands SoilMDQEMLDRIIAVTTAEGTLANRMGIKILSASGTEVVATMPVAGN
Ga0116225_141792113300009524Peatlands SoilMDQEMLDRIIAVTTAEGTLAHSMGIKILSASGAEVVATMP
Ga0116217_1013572613300009700Peatlands SoilMDQEMLDRVIAVTIAEGTLAHSMGIKILSASGTEVMAT
Ga0126376_1228584813300010359Tropical Forest SoilMDQEMLDRIVAVTTAEGTLAHRMGIKILSASGAEVTATMPV
Ga0126381_10134193113300010376Tropical Forest SoilMDQEMLDRVVAVTTAEGTLAQAMGIKVLSASGSEVVATMPVAGNVQPF
Ga0136449_10139766513300010379Peatlands SoilMDQEMLDRIIAVTTAEGTLAHSMGIKILSASGTEVVATMPVAG
Ga0134124_1017926433300010397Terrestrial SoilMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVVA
Ga0126383_1302263013300010398Tropical Forest SoilMEQEILDRVVAVTTAEGTLAHRMGIKIRSASGSEVVATMPV
Ga0134127_1112959723300010399Terrestrial SoilMNQEMLDRVVAITTAEDTLAHRMGIKILSASGSEV
Ga0137381_1126226723300012207Vadose Zone SoilMNQEMLDRIVAVTTAEGTLAHRMGIKIQSASGSEVVAT
Ga0137379_1081802913300012209Vadose Zone SoilMNQEMLDRIVAVTTAEGTLAHRMGIKILSASGAEVVATMPV
Ga0137377_1015002813300012211Vadose Zone SoilMNQEMLDRIVAVTTAEGTLAHRMGIKILSASGSEVVATMPV
Ga0137387_1015412823300012349Vadose Zone SoilMNQEMLDRIVAVTTAEGTLAHSMGIKIVSASASGSEVVATMPVAGNIQP
Ga0137384_1073555913300012357Vadose Zone SoilMLREVRMNQEMLDRIVAVTTAEGTLAHRMGIKVQSASGSEVV
Ga0137413_1072864823300012924Vadose Zone SoilMDQEMLDRVVAVTTAEGTLAHRMGIKILSASGSEVVARMPVAG
Ga0164303_1004078833300012957SoilMLDRIVAVTTAEGTLAHSMGIKVLSASASGSEVVATMPVAG
Ga0164309_1040098823300012984SoilMNQEMLDRIAAVTTAEGTLAHSMGIKVLSASASGSEVVATMPVTGN
Ga0157373_1096947823300013100Corn RhizosphereMDQDLLDRVMAATTAEGTLAHRMGITIVSASGTEV
Ga0157372_1140890123300013307Corn RhizosphereMEEVRMNQEMLDMIVAVTTAEGTLAHRMGIKIISASGAE
Ga0157375_1092180823300013308Miscanthus RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKIQSASGSEVVATMPVA
Ga0182041_1142889713300016294SoilMDQEMLDRAIAVTTAEGTLAHTMGIKILSASGTEVVATMP
Ga0182039_1013022323300016422SoilMEQKVLDRIVAVTTAEGTLARRMGIKILSASGSEVVATMPVA
Ga0182038_1037050913300016445SoilMDQEMLDRVVALTTAEGTLAHRMGIRIVSASGSRV
Ga0134074_133102813300017657Grasslands SoilMNQEMLDRIVAVTIAEGTLAHRMGITIQSASGSEVVATMPVAGNTQPF
Ga0187812_113200523300017821Freshwater SedimentMDQETLGKITAVTVADDTLAGRIGIKIVSASASRVVAT
Ga0187802_1013650313300017822Freshwater SedimentMDQEMLDKIAAVTVAGNTLAGRMGIKIQSASASRVVATM
Ga0187814_1039998123300017932Freshwater SedimentMDQETLGKITAVTVADDTLAGRMGIKIVSASASRVVATMPVAGNI
Ga0187847_1069054023300017948PeatlandMDQETLDTMVAMTIAEGTLADTMGISIVSASAAEVVATMPVAGNV
Ga0187779_1130646023300017959Tropical PeatlandMDQETLDKITAMTVAEGTLPGRMGIKIVSASASQVVATMPAEGNIQP
Ga0187780_1030442613300017973Tropical PeatlandMEQETLGTIAAVTVADGTLAGRMGIKVVSASASRVVATMPVDGNIQ
Ga0187767_1021490123300017999Tropical PeatlandMNQEMLDRIVAVTTAEDTLAYRMGIKILSASGSEVVATMPVAG
Ga0193728_114013713300019890SoilMNQEMLDRIVAITTAEDTLAHRMGIKILSASGSEVVATMPV
Ga0210395_1053388913300020582SoilMNQEMLDRVVAVTTAEGTLAHRMGIKILSASGSEVVATMPVAGN
Ga0210385_1117532623300021402SoilMDREMLDTIMARTVAEGTLAGRMGITIVSASASRV
Ga0210387_1106113423300021405SoilMNQEMLDRIVAVTTAEGTLAHRMGIKILSASGAEV
Ga0210402_1028198213300021478SoilMEEVRMKQEMLDRIVAVTTAEGTLAHRMGIKILSASGAEVVATMPVTGNTQP
Ga0210409_1047660013300021559SoilMDREMLDTIMARTVADGTLAGRMGITIVSASASRVVATM
Ga0247668_103904013300024331SoilMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMPV
Ga0207692_1064411213300025898Corn, Switchgrass And Miscanthus RhizosphereMNREMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMPVA
Ga0207693_1048527013300025915Corn, Switchgrass And Miscanthus RhizosphereMDQDLLDRVMAATTAEGTLAHRMGITIVSASGTEVVATMPV
Ga0207693_1050955823300025915Corn, Switchgrass And Miscanthus RhizosphereMDQDLLDRAMAATTAEGTLAHRMGITIVSASGTEVVATMPV
Ga0207700_1018271213300025928Corn, Switchgrass And Miscanthus RhizosphereMNQEMLDRIVAVTTAEGTLAHRMGIKILSASGAEVVATMPVAG
Ga0207686_1058729023300025934Miscanthus RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVV
Ga0207686_1069282213300025934Miscanthus RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEV
Ga0207678_1001228563300026067Corn RhizosphereMNREMLDRIAAVTTAEGTLAHRMGIKILSASASEV
Ga0207641_1015208833300026088Switchgrass RhizosphereMNREMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMPVAG
Ga0207641_1044849813300026088Switchgrass RhizosphereMNQEMLDRIAAVTTAEGTLAHRMGIKILSASASEVVAT
Ga0207676_1060835123300026095Switchgrass RhizosphereMNREMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMPVAGNT
Ga0257160_108305013300026489SoilMDQETLDTIMAVTVAEDTLPGRMGIKIVSASASRVVA
Ga0208365_103521513300027070Forest SoilMNQEMLDRIVAVTTAEGTLAHRMGIKILSASGAEVVAT
Ga0208637_103593323300027401SoilMNQEMLDRIVAVTIAEGTLAHRMGIKIQSASGSEVVATMPVAGNTQP
Ga0207826_100375213300027680Tropical Forest SoilMDQEMLDAIRSMTVADDTLPGRMGMKILSASSISWS
Ga0209060_1032309623300027826Surface SoilMDQEMLDAIMARTVAEGTLAGRMGITIVSASASQVVATMP
Ga0209773_1016069913300027829Bog Forest SoilMDQETLEKITARTVAEGTLAGRMGITIVSASASRVVATMPVEG
Ga0209693_1012448423300027855SoilMDQEILDKIVAFTVAQGTLADRMGIKILSASASQVVG
Ga0209275_1082597623300027884SoilMDQEMLDTIMARTVAEGTLAGRMGITIVSASASRVVATMPVE
Ga0268266_1038972823300028379Switchgrass RhizosphereMNREMLDRIAAVTTAEGTLAHRMGIKILSASASEVVATMPVAGN
Ga0311368_1018372213300029882PalsaMDRETLDTMVAMTIAEGTLADTMGITIVSASAAEVVATMPVAGN
Ga0310037_1002088313300030494Peatlands SoilMDQEMLDRIIAVTTAEGTLAHSMGIKILSASGAEVV
Ga0310039_1012360613300030706Peatlands SoilMDQEMLDRIIAVTTAEGTLAHSMGIKILSASGTEVVATMPVAGNV
Ga0310038_1016089513300030707Peatlands SoilMDQEMLDRVIAVTIAEGTLAHSMGIKILSASGTEVMA
Ga0318516_1044326713300031543SoilMDQEMLDRVVALTTAEGTLAHRMGIRIVSASGSRVVATMPV
Ga0318541_1026386613300031545SoilMEQKVLDRIVAVTTAEGTLARRMGIKILSASGSEVVATMPVAGN
Ga0318528_1021944023300031561SoilMEQKVLDRIVAVTTAEGTLARRMGIKILSASGSEV
Ga0318561_1052731723300031679SoilMDQEMLDEIMAMTVADGTLAGRMGIEILSASASRVVATM
Ga0318574_1093256623300031680SoilMDQELLERIMAVTTAEGTLAHRTGIKILSASGTEVTGTMPA
Ga0310686_11382852323300031708SoilMDQEILDTIMARTVAEGTLAGRMGITIVSASASRVVATMPVE
Ga0318494_1064983713300031751SoilMLDTIMATTVAEGTLPGRMGIKILSASASRVVATMPAEGN
Ga0318526_1017830613300031769SoilMDQETLERIMATTVAEGTLPGRMGIKILSASASRVVATMPA
Ga0318526_1031514423300031769SoilMDQATLDKIMAVTVAEDTLPGRMGIKIVSASASRVVATMPAEGNIQAH
Ga0318521_1043705513300031770SoilMDQEMLDEIMAMTVADGTLAGRMGIEILSASDSQVV
Ga0318521_1086192613300031770SoilMDQEMLDRAIAVTTAEGTLAHTMGIKILSASGTEVVATMPVAG
Ga0318529_1026771413300031792SoilMDRQTLDKITAMTVAEGTLPGRMGIKIRSASAARVVATMPAEGN
Ga0318529_1033443013300031792SoilMDQETLERIMATTVAEGTLPGRMGIKILSASASRVVATMPAEGNI
Ga0318550_1027649413300031797SoilMDQEMLDRIMAVTTAEGTLAHTMGIKILSASGTEVVA
Ga0318517_1019714523300031835SoilMEQKVLDRIVAVTTAEGTLARRMGIKILSASGSEVVATMPVAGNIQP
Ga0318511_1023812813300031845SoilMDQEILDRAVAVTTGEGTLAGRMGIKILSASGSEVVATMPVAGN
Ga0318495_1021035913300031860SoilMDEETLDNITAMTVAEGTLPGRMGIKIVSASASQVVATMPAEGNIQPH
Ga0310916_1042175423300031942SoilMDQEILDRAVAVTTGEGTLAGRMGIKILSASGSEVVATMPV
Ga0318531_1033857823300031981SoilMDQEILDRAVAVTTGEGTLAGRMGIKILSASGSEVVATM
Ga0306922_1095643723300032001SoilMDQDTLDKITAMTVAEGTLPGRMGIKIVSASASQVVATMPA
Ga0318533_1144207613300032059SoilMNQEMLDRVIAVTTAEGTLAHRMGIKIVSASGSQVVATMPVAGNI
Ga0318525_1036546413300032089SoilMDQETLERIMATTVAEGTLPGRMGIKILSASASRVV
Ga0311301_1045564423300032160Peatlands SoilMDQEMLDRIIAVTTAEGTLAHSMGIKILSASGTEVVATMPVAGNVQPY
Ga0311301_1060869523300032160Peatlands SoilMDQEMLDRIIAVTTAEGTLAHSMGIKILSASGTEVVATMPVAGN
Ga0335079_1053850513300032783SoilMDQEMLDRVVAVTTAEGTLAHRMGIRIVSASGSEVVATMPVAGN
Ga0335078_1117714023300032805SoilMDQEMLDRVVAVTTAEGTLAHRMGIKILSASGAEVVATMPVAGNT
Ga0335078_1204396713300032805SoilMDRETLDKITAVTVAGDTLAGRMGIKIQSASASRVVATM
Ga0335083_1012791313300032954SoilMDQEMLGRVVAVTTAEGTLARRMGIRILSASGSEVVATMPVAGNI
Ga0335073_1074137513300033134SoilMNQEMLDKIAAVTTAEGTLAHRMGIKILSASASEVVAT


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