Metagenome / Metatranscriptome Family F097812

Overview

Basic Information

• Family ID: F097812
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 41 residues
• Representative Sequence: DDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 1.92 %
• % of genes near scaffold ends (potentially truncated): 96.15 %
• % of genes from short scaffolds (< 2000 bps): 95.19 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (50.962 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.538 % of family members)
• Environment Ontology (ENVO): Unclassified (42.308 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (46.154 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 20.90%
  β-sheet: 0.00%
  Coil/Unstructured: 79.10%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF07784	DUF1622	11.54
PF00196	GerE	4.81
PF00923	TAL_FSA	2.88
PF08281	Sigma70_r4_2	2.88
PF12973	Cupin_7	2.88
PF13191	AAA_16	1.92
PF05201	GlutR_N	1.92
PF00440	TetR_N	1.92
PF07992	Pyr_redox_2	1.92
PF14759	Reductase_C	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG4828	Uncharacterized membrane protein	Function unknown [S]	11.54
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	2.88
COG0373	Glutamyl-tRNA reductase	Coenzyme transport and metabolism [H]	1.92
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.96
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.96
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.96
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.96
COG0720	6-pyruvoyl-tetrahydropterin synthase	Coenzyme transport and metabolism [H]	0.96
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.96
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.96 %
Unclassified	root	N/A	49.04 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.96 %
Unclassified	root	N/A	49.04 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.96 %
Unclassified	root	N/A	49.04 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.81 %
Unclassified	root	N/A	49.04 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.85 %
Unclassified	root	N/A	49.04 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.96 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.96 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.92 %
Unclassified	root	N/A	49.04 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.96 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.96 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.92 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.96 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.96 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.96 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.96 %
Unclassified	root	N/A	49.04 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.96 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.92 %
Ktedonosporobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae	0.96 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.96 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.96 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.96 %
Unclassified	root	N/A	49.04 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.96 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Knoellia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia	1.92 %
Ktedonosporobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter	0.96 %
Methylocystis rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Unclassified	root	N/A	49.04 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.96 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.96 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Knoellia sinensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → Knoellia sinensis	1.92 %
Ktedonosporobacter rubrisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	0.96 %
Methylocystis rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Sphingomonas sp. RIT328	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. RIT328	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.96 %
Unclassified	root	N/A	49.04 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Knoellia sinensis KCTC 19936	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → Knoellia sinensis → Knoellia sinensis KCTC 19936	1.92 %
Ktedonosporobacter rubrisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	0.96 %
Methylocystis rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Sphingomonas sp. RIT328	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. RIT328	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.96 %
Unclassified	root	N/A	49.04 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2199352024|deeps__Contig_74590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	766
3300000364|INPhiseqgaiiFebDRAFT_101963541	Not Available	608
3300002028|A17_1213572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	650
3300002568|C688J35102_120295991	All Organisms → cellular organisms → Bacteria	974
3300004629|Ga0008092_11282719	All Organisms → cellular organisms → Bacteria	648
3300005332|Ga0066388_102014802	All Organisms → cellular organisms → Bacteria	1035
3300005363|Ga0008090_10044702	All Organisms → cellular organisms → Bacteria	538
3300005363|Ga0008090_15165540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	500
3300005468|Ga0070707_101309660	All Organisms → cellular organisms → Bacteria	691
3300005535|Ga0070684_101565243	All Organisms → cellular organisms → Bacteria	621

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.27%
Host-Associated	Host-Associated	6.73%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.96%
Plants	Host-Associated → Plants	6.73%
Terrestrial	Environmental → Terrestrial	92.31%

Category

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil	91.35%

Type

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.77%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Permafrost And Active Layer Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.81%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2199352024	Bare-fallow DEEP SOIL	Environmental
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300002028	Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_01210990	2199352024	Soil	VHRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS
INPhiseqgaiiFebDRAFT_1019635411	3300000364	Soil	GRCNRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS*
A17_12135721	3300002028	Permafrost And Active Layer Soil	RTLDHFNVPEREKGEALAAFNGWKGEVTAGSDPDAVNWRRWN*
C688J35102_1202959913	3300002568	Soil	LDDFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWP*
Ga0008092_112827191	3300004629	Tropical Rainforest Soil	NALDDFNVPEREKQEVLAAFDGEKGEVSAGSQPGAVNWRRWR*
Ga0066388_1020148024	3300005332	Tropical Forest Soil	MDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0008090_100447021	3300005363	Tropical Rainforest Soil	MDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR*
Ga0008090_151655401	3300005363	Tropical Rainforest Soil	ALDDFNVPEREKNEVLGAFGGEKGEVTAGSQPGAVNWATWD*
Ga0070707_1013096602	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TLDHFKVPEREKGEVLSAFARWKGEVTAGSEPGSVNWRRWR*
Ga0070684_1015652431	3300005535	Corn Rhizosphere	VSAELANALDDFNVPEREKQEVLAAFNREKSEVSAGSQPGAVNWRRWH*
Ga0066903_1014926181	3300005764	Tropical Forest Soil	QELINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSEPGAVNWRRWR*
Ga0066903_1051027881	3300005764	Tropical Forest Soil	VPEREKAEVLAGFAGEKGEVTAGSQPGAVNWRRWR*
Ga0066903_1081789111	3300005764	Tropical Forest Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0066696_106211191	3300006032	Soil	DDFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0066656_102192723	3300006034	Soil	LTLDHFKVPEREKGEVLGTFARWKGEVTAGSESGSVNWRRWR*
Ga0070712_1004018511	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ELANALDEFQVPEREKQEVLAGFAGEKSEVTAGSQPGAVNWRRWR*
Ga0066665_109293052	3300006796	Soil	HFKVPEREKGEVLAAFAGWKGEVTAGSEPGSVNWRRWR*
Ga0075433_110955421	3300006852	Populus Rhizosphere	LDEFKVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRRWR*
Ga0079219_101270273	3300006954	Agricultural Soil	GRRLRPRPVHGDGRLDDFNLPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS*
Ga0066709_1004974913	3300009137	Grasslands Soil	GRRLRPRPVHRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGFPSGAVNWRRWS*
Ga0114129_107347531	3300009147	Populus Rhizosphere	PEREKGEVLAAFGGWKDEVTAGSKPGAVNWRRWR*
Ga0114129_115247683	3300009147	Populus Rhizosphere	GATLDHFGVPEREKGEVLDAFASRKGEVTAGSERGAVNWRRWRSGA*
Ga0126374_111681492	3300009792	Tropical Forest Soil	LDDFNVPEREKGEVLAAFAGEKSEVSAGSQPGAVNWRRWRS*
Ga0126308_103113571	3300010040	Serpentine Soil	HFSVPGGEKEEVLAAFNGWKEEVTAGSQPDAINWRRWR*
Ga0126311_101205321	3300010045	Serpentine Soil	TLDHFNVPEREQEEVLAAFNGWKEEVTAGSQPGAINWRRWR*
Ga0126384_107990042	3300010046	Tropical Forest Soil	VPEREKQEVLAAFAAEKGEVSAGSQPGAVNWRSWR*
Ga0127503_111001112	3300010154	Soil	FKVPEREKGEVLGAFAGWKGEVTAGSEPGVVNWRRWH*
Ga0126370_108395901	3300010358	Tropical Forest Soil	DFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0126376_107720512	3300010359	Tropical Forest Soil	GMIRLRTVLDEFKVPEREKQEVLAAFAAEKGEVTAGSQPGEVNWRRWR*
Ga0126372_127869182	3300010360	Tropical Forest Soil	INAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR*
Ga0134128_117791622	3300010373	Terrestrial Soil	DFNVPEREKQEVLAAFNGEKGEVSAGSQPGAVNWRRWR*
Ga0126381_1016039153	3300010376	Tropical Forest Soil	DFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWP*
Ga0126381_1040433511	3300010376	Tropical Forest Soil	VPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0126383_107276861	3300010398	Tropical Forest Soil	SVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0126383_113045752	3300010398	Tropical Forest Soil	INAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR*
Ga0126383_136499811	3300010398	Tropical Forest Soil	DAFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0137364_105755551	3300012198	Vadose Zone Soil	TLDEFNVPEREKGEVLAGFAGEKSEVTAGSQPGAVNWRRWR*
Ga0137365_102601553	3300012201	Vadose Zone Soil	VHRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGFPSGAVNWRRWS*
Ga0137363_101037663	3300012202	Vadose Zone Soil	MDEFQVPDREKQEVLAAFANEKGAVTAGSQPEAVNWRRWR*
Ga0137374_102137154	3300012204	Vadose Zone Soil	FKVPEREKGEALAAFNGWKDEVTAGSKPGAVNWRRWH*
Ga0137381_103514591	3300012207	Vadose Zone Soil	HRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS*
Ga0162652_1000716922	3300012941	Soil	LDDFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0164303_107175292	3300012957	Soil	TLDHFNVPEREKGEVLTAFGGWKGEVTAGSKEGAVNWRRWH*
Ga0164305_113608452	3300012989	Soil	DFHVPEREKGEVLAGFAGEKGEVTAGSQPEAVNWRRWR*
Ga0157371_106629811	3300013102	Corn Rhizosphere	LDDFNVPEREKGEVLAGFAGGKGAVTAGSQPGAVNWRRWR*
Ga0132256_1005326373	3300015372	Arabidopsis Rhizosphere	DDFNVPEREKQEVLAAFNGEKGEVSAGSQPGEVNWRRWR*
Ga0182041_112586321	3300016294	Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0182039_112115391	3300016422	Soil	LINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0187781_102542931	3300017972	Tropical Peatland	FKVPGREKAEVLEAFAGWKGEVTAGSAPESVNWRRWR
Ga0187784_102132063	3300018062	Tropical Peatland	MSPEPTDFKVPGREKAEVLEAFAGWKGEVTAGSAPESVNWRRWR
Ga0210399_114897651	3300020581	Soil	QELINALNEFKVPEREKQEVLAAFANEKGEVTAGSQPGAVNWRRWR
Ga0126371_109444013	3300021560	Tropical Forest Soil	VPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0126371_119006411	3300021560	Tropical Forest Soil	AMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWP
Ga0207646_106970112	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TLDHFKVPEREKGEVLSAFARWKGEVTAGSEPGSVNWRRWR
Ga0209027_11430301	3300026300	Grasslands Soil	LTLDHFKVPEREKGEVLGAFARWKGEVTAGSEPGSVNWRRWR
Ga0209056_107069802	3300026538	Soil	FNVPEREKQEVLAAFAGEKGEVSAGFPSGAVNWRRWS
Ga0209415_100348981	3300027905	Peatlands Soil	HFKVPEREKDQVLDAFAGWKGEVTAGSKPEAVNWRRWR
Ga0247822_110131802	3300028592	Soil	LTLEHFRVPERERGEVLGAFAGWKGEVTAGSEPGATNWRRWRSRP
Ga0170820_141549261	3300031446	Forest Soil	LDDFNVPEREKGEVLAGFAGEKSEVSAGSQPGAVNWRRWR
Ga0170818_1118377201	3300031474	Forest Soil	SAELANALDDFNVPEREKQEVLAAFNGEKGEVSAGSQPGEVNWRRWR
Ga0318516_104720712	3300031543	Soil	DFKVPEREKGEVLAAFAAEKGEVSAGSQPGAVNWRRWR
Ga0318516_107861591	3300031543	Soil	DFKVPEREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318541_101734602	3300031545	Soil	FKVPEREKGEVLAAFAAEKGEVSAGSQPEAVNWRRWR
Ga0318538_102106481	3300031546	Soil	AMDEFKVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH
Ga0318528_102690643	3300031561	Soil	AMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318573_105740431	3300031564	Soil	LDDFKVPEREKGEVLAAFAAEKGEVSAGSQPGAVNWRRWR
Ga0318555_106080461	3300031640	Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWP
Ga0318496_101996512	3300031713	Soil	QELINAMDDFKVPDREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0318493_104957031	3300031723	Soil	FNVPEREKAEVLAGFAGEKGEVTAGSQRGAVNWRRWR
Ga0306918_106569303	3300031744	Soil	AELSYTLDHFQVPEPEKGEVLGAFAGWRGEVTAGAEPGAVNWRRWR
Ga0318535_101454921	3300031764	Soil	LDDFKVPEPEKGEVLGAFAGWRGEVTAGAQPEAVNWRRWR
Ga0318554_101601064	3300031765	Soil	FKVPEREKAEVLAAFGAEKGEVTAGSQPGQVNWRRWR
Ga0318526_100807241	3300031769	Soil	DFKVPEREKGEVLAAFAAEKGEVSAGSQPEAVNWRRWR
Ga0318521_102922022	3300031770	Soil	DDFHVPEREKAEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0318543_101597062	3300031777	Soil	TQELINAMDDFKVPDREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0318508_10826243	3300031780	Soil	RHTLDHFGVPEREKGEVLGAFGAERREVTAGSQPGAVNWRRWR
Ga0318576_103023482	3300031796	Soil	VPEREKAEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0318565_106359951	3300031799	Soil	DDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318497_103083453	3300031805	Soil	MDDFKVPDREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318497_107520082	3300031805	Soil	ELINAMDDFKVPDREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0318527_103200502	3300031859	Soil	FKVPEREKAEVLAAFGGEKGEVSAGSQPGAVNWRRWR
Ga0318495_100381164	3300031860	Soil	FKVPEREKAEVLAAFGAEKGEVTASSQPGEVNWRRWR
Ga0318536_100406853	3300031893	Soil	INAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318522_103694482	3300031894	Soil	KVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318551_105116352	3300031896	Soil	DDFKVPEREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318551_107056401	3300031896	Soil	LDDFNVPEREKGEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0307407_101550621	3300031903	Rhizosphere	VPEREKGEVLAAFGGWKDEVTAGSKQGAVNWRRWR
Ga0306921_111647362	3300031912	Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0306921_115505561	3300031912	Soil	LINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0306921_126026542	3300031912	Soil	MDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0310912_100650621	3300031941	Soil	FKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0310910_104991632	3300031946	Soil	DDFNVPEREKGEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0306926_108153032	3300031954	Soil	FEVPEREKAEVLAAFGAEKGEVTAGSEPGAVNWRRWR
Ga0307416_1028562971	3300032002	Rhizosphere	RTLDHFSVPEREKEEVLAAFNGWKEEVTAGSKPGAINWRRWR
Ga0318507_102122252	3300032025	Soil	VPEREKGEVLAAFAAEKGEVSAGSQPGAVNWRRWR
Ga0318559_101667303	3300032039	Soil	VPDREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318556_106194031	3300032043	Soil	ELINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSEPGQVNWRRWR
Ga0318558_106252842	3300032044	Soil	STLDDFKVPEREKAEVLAAFGGEKGEVSAGSQPGAVNWRRWR
Ga0318514_104055461	3300032066	Soil	FKVPEREKAEVLAAFGAEKGEVTASSQPGEANWRRWR
Ga0318524_107426493	3300032067	Soil	TLDHFQVPEPEKGEVLGAFAGWRGEVTAGAEPGAVNWRRWR
Ga0318525_102697831	3300032089	Soil	DDFNVPEREKQEVLAAFADEEGEVSAGSPSGAVNWRRWS
Ga0318518_105242861	3300032090	Soil	DDFKVPEREKGEVLAAFAAEKGEVSAGSQPEAVNWRRWR
Ga0318577_105025603	3300032091	Soil	VPEPEKGEVLGAFAGWRGEVTAGAQPEAVNWRRWR
Ga0310914_103843151	3300033289	Soil	KVPEREKAEVLAAFGAEKGEVTAGSEPGAVNWRRWR