Metagenome / Metatranscriptome Family F097808

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097808
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	VVARTEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARLAG
Number of Associated Samples	86
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.462 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (23.077 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.962 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.48% β-sheet: 2.99% Coil/Unstructured: 92.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF08240	ADH_N	30.77
PF01232	Mannitol_dh	22.12
PF08125	Mannitol_dh_C	19.23
PF00294	PfkB	18.27
PF00069	Pkinase	1.92
PF03601	Cons_hypoth698	0.96
PF00575	S1	0.96
PF00392	GntR	0.96
PF01909	NTP_transf_2	0.96
PF01740	STAS	0.96
PF00378	ECH_1	0.96
PF13185	GAF_2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0246	Mannitol-1-phosphate/altronate dehydrogenases	Carbohydrate transport and metabolism [G]	41.35
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.69
COG2855	Uncharacterized membrane protein YadS, UPF0324 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.62 %
Unclassified	root	N/A	11.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34.62 %
Unclassified	root	N/A	11.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.27 %
Unclassified	root	N/A	11.54 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	8.65 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	8.65 %
unclassified Sphingomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → unclassified Sphingomonadaceae	0.96 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	8.65 %
Sphingomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → unclassified Sphingomonadaceae → Sphingomonadaceae bacterium	0.96 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.96 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	8.65 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples	0.96 %
Sphingomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → unclassified Sphingomonadaceae → Sphingomonadaceae bacterium	0.96 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	8.65 %
uncultured Pseudonocardia sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	0.96 %
Sphingomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → unclassified Sphingomonadaceae → Sphingomonadaceae bacterium	0.96 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig08123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1696	Open in IMG/M
3300002245\|JGIcombinedJ26739_100469610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300002245\|JGIcombinedJ26739_100503460	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300005341\|Ga0070691_10829292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300005467\|Ga0070706_100365270	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300005518\|Ga0070699_101397943	Not Available	642	Open in IMG/M
3300005536\|Ga0070697_100360291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1257	Open in IMG/M
3300005610\|Ga0070763_10180120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1118	Open in IMG/M
3300005764\|Ga0066903_102187307	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1066	Open in IMG/M
3300005764\|Ga0066903_108804847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	512	Open in IMG/M
3300006059\|Ga0075017_101327480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300006175\|Ga0070712_100539402	Not Available	982	Open in IMG/M
3300006175\|Ga0070712_100574413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	952	Open in IMG/M
3300006176\|Ga0070765_101458030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300006176\|Ga0070765_101647444	All Organisms → cellular organisms → Bacteria → Terrabacteria group	603	Open in IMG/M
3300006861\|Ga0063777_1414712	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300006904\|Ga0075424_101215855	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300009520\|Ga0116214_1408740	All Organisms → cellular organisms → Bacteria → Terrabacteria group	531	Open in IMG/M
3300010046\|Ga0126384_11105290	All Organisms → cellular organisms → Bacteria → Terrabacteria group	727	Open in IMG/M
3300010048\|Ga0126373_11296854	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300010048\|Ga0126373_11298832	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300010048\|Ga0126373_12241703	Not Available	607	Open in IMG/M
3300010358\|Ga0126370_10795563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	842	Open in IMG/M
3300010361\|Ga0126378_10883618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1001	Open in IMG/M
3300010376\|Ga0126381_104109036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	565	Open in IMG/M
3300010859\|Ga0126352_1295075	All Organisms → cellular organisms → Bacteria → Terrabacteria group	506	Open in IMG/M
3300012199\|Ga0137383_10239789	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300012206\|Ga0137380_11213033	All Organisms → cellular organisms → Bacteria → Terrabacteria group	639	Open in IMG/M
3300012208\|Ga0137376_10426174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1152	Open in IMG/M
3300012942\|Ga0164242_11168950	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300013100\|Ga0157373_11242664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → unclassified Sphingomonadaceae → Sphingomonadaceae bacterium	562	Open in IMG/M
3300017933\|Ga0187801_10034514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1789	Open in IMG/M
3300017961\|Ga0187778_10229119	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300017993\|Ga0187823_10178077	All Organisms → cellular organisms → Bacteria → Terrabacteria group	686	Open in IMG/M
3300018007\|Ga0187805_10450926	All Organisms → cellular organisms → Bacteria → Terrabacteria group	600	Open in IMG/M
3300018058\|Ga0187766_10772762	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300021402\|Ga0210385_11429790	All Organisms → cellular organisms → Bacteria → Terrabacteria group	529	Open in IMG/M
3300021404\|Ga0210389_11123309	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300021405\|Ga0210387_10041113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3688	Open in IMG/M
3300021420\|Ga0210394_11502576	Not Available	570	Open in IMG/M
3300021474\|Ga0210390_11040217	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300021477\|Ga0210398_10479164	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300021477\|Ga0210398_10895363	All Organisms → cellular organisms → Bacteria → Terrabacteria group	711	Open in IMG/M
3300021479\|Ga0210410_10441937	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1164	Open in IMG/M
3300021479\|Ga0210410_10601422	All Organisms → cellular organisms → Bacteria → Terrabacteria group	976	Open in IMG/M
3300021559\|Ga0210409_11682506	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300021560\|Ga0126371_10088283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3060	Open in IMG/M
3300022523\|Ga0242663_1090748	All Organisms → cellular organisms → Bacteria → Terrabacteria group	597	Open in IMG/M
3300022523\|Ga0242663_1122675	All Organisms → cellular organisms → Bacteria → Terrabacteria group	537	Open in IMG/M
3300022724\|Ga0242665_10176828	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300025898\|Ga0207692_10445243	Not Available	814	Open in IMG/M
3300025910\|Ga0207684_10597912	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300025928\|Ga0207700_11378649	All Organisms → cellular organisms → Bacteria → Terrabacteria group	627	Open in IMG/M
3300026481\|Ga0257155_1050215	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300026508\|Ga0257161_1054152	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300026557\|Ga0179587_10146399	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1469	Open in IMG/M
3300027029\|Ga0208731_1029942	All Organisms → cellular organisms → Bacteria → Terrabacteria group	594	Open in IMG/M
3300027505\|Ga0209218_1017335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	1318	Open in IMG/M
3300027895\|Ga0209624_10906709	All Organisms → cellular organisms → Bacteria → Terrabacteria group	575	Open in IMG/M
3300028781\|Ga0302223_10198675	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300028806\|Ga0302221_10052800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1861	Open in IMG/M
3300028877\|Ga0302235_10105092	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1283	Open in IMG/M
3300028877\|Ga0302235_10200514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	879	Open in IMG/M
3300028877\|Ga0302235_10494605	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300028879\|Ga0302229_10028509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2969	Open in IMG/M
3300028879\|Ga0302229_10290606	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300028879\|Ga0302229_10559880	Not Available	503	Open in IMG/M
3300028906\|Ga0308309_10201766	Not Available	1639	Open in IMG/M
3300029943\|Ga0311340_10009309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12717	Open in IMG/M
3300029943\|Ga0311340_10032570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6380	Open in IMG/M
3300029951\|Ga0311371_10682062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1296	Open in IMG/M
3300029997\|Ga0302302_1275285	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300030007\|Ga0311338_10006710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17609	Open in IMG/M
3300030013\|Ga0302178_10107483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1427	Open in IMG/M
3300030013\|Ga0302178_10411911	Not Available	601	Open in IMG/M
3300030043\|Ga0302306_10035536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2004	Open in IMG/M
3300030054\|Ga0302182_10184834	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300030490\|Ga0302184_10034452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2585	Open in IMG/M
3300030490\|Ga0302184_10199668	All Organisms → cellular organisms → Bacteria → Terrabacteria group	841	Open in IMG/M
3300030503\|Ga0311370_10049812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6177	Open in IMG/M
3300030503\|Ga0311370_11288323	All Organisms → cellular organisms → Bacteria → Terrabacteria group	783	Open in IMG/M
3300030617\|Ga0311356_10907328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	829	Open in IMG/M
3300030659\|Ga0316363_10272612	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300030855\|Ga0075374_11303234	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031057\|Ga0170834_102131323	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300031234\|Ga0302325_10533395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1758	Open in IMG/M
3300031236\|Ga0302324_100101356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4880	Open in IMG/M
3300031549\|Ga0318571_10026251	Not Available	1577	Open in IMG/M
3300031573\|Ga0310915_10596004	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300031718\|Ga0307474_10264919	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300031764\|Ga0318535_10367665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300031782\|Ga0318552_10377809	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300031799\|Ga0318565_10445316	All Organisms → cellular organisms → Bacteria → Terrabacteria group	627	Open in IMG/M
3300031823\|Ga0307478_11479452	All Organisms → cellular organisms → Bacteria → Terrabacteria group	562	Open in IMG/M
3300031860\|Ga0318495_10089763	Not Available	1379	Open in IMG/M
3300031954\|Ga0306926_10367013	Not Available	1779	Open in IMG/M
3300031962\|Ga0307479_10227814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1838	Open in IMG/M
3300032042\|Ga0318545_10277722	All Organisms → cellular organisms → Bacteria → Terrabacteria group	602	Open in IMG/M
3300032076\|Ga0306924_10071748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3866	Open in IMG/M
3300032515\|Ga0348332_10546866	Not Available	1520	Open in IMG/M
3300032770\|Ga0335085_11740687	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300034163\|Ga0370515_0014896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3628	Open in IMG/M
3300034163\|Ga0370515_0023851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2794	Open in IMG/M
3300034820\|Ga0373959_0037149	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.15%
Host-Associated	Host-Associated	2.88%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.31%
Aquatic	Environmental → Aquatic	3.85%
Plants	Host-Associated → Plants	2.88%
Modeled	Engineered → Modeled	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.27%
Peat	Environmental → Terrestrial → Peat	23.08%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.96%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.23%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.08%
Loam	Environmental → Terrestrial → Soil → Loam	19.23%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.08%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	23.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.12%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006861	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012942	Miracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027029	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029997	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0123.00000890	2166559005	Simulated	EDHTLVVARTEGRKPPAPGQQVTFNVQPDDVFAFQPKTGARLAG
JGIcombinedJ26739_1004696101	3300002245	Forest Soil	EGRKPPAPGQRVAFAVQSADVLAFNPATGARLAG*
JGIcombinedJ26739_1005034602	3300002245	Forest Soil	ARAEGRRPPALGQHVTFNVQPDDMFGFHPVTGARLAG*
Ga0070691_108292921	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GRTVVARTEGRKSPAPGQRVAFRAQPDNIFAFHPATGARLAG*
Ga0070706_1003652702	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	PVVARAEGRKPPAPGQEVTFRVQPEDVFAFHPKTGARLAG*
Ga0070699_1013979432	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VVARAEGRKPPTPGMHVTFHVEPDDVFAFHPENGARLAG*
Ga0070697_1003602913	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	QVVARAEGRKPPTPGQAVTLRIQPDDVFAFHPVTGARLAG*
Ga0070763_101801202	3300005610	Soil	LAGGGDPVVARTEGRKPPAQGQPVTFHVQADDVFAFYPETGERLIG*
Ga0066903_1021873071	3300005764	Tropical Forest Soil	AEGRQPPAPGQQVSFYIRPEDVFAFHPVTGARLAG*
Ga0066903_1088048472	3300005764	Tropical Forest Soil	DHNLVVARTEGRKPPAPGQEVTFRVQPDDIFAFHPKTGARLAG*
Ga0075017_1013274801	3300006059	Watersheds	VVARTEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARLAG*
Ga0070712_1005394021	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EGRKPPAPGQDVTFRVQPDDVFAFHPVTGARLAG*
Ga0070712_1005744132	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GDAGPAVGNTVVARTEGRKSPAPGQRVAFRAQPDNIFAFHPATGARLAG*
Ga0070765_1014580301	3300006176	Soil	VARAEGRRPPALGQHVTFNVQPDDMFGFHPATGARLAG*
Ga0070765_1016474441	3300006176	Soil	AEGRKPPAPGQRVAFRVQSADVLAFNPATGARLAG*
Ga0063777_14147121	3300006861	Peatlands Soil	HVRLSESGNSVVARTEGRVSLTPGQRVTFRVQPDDIFAFHPVTGARLAG*
Ga0075424_1012158551	3300006904	Populus Rhizosphere	AEGRKPPAQGQGVTFHVQTDDIFAFHPVTGARLAG*
Ga0116214_14087401	3300009520	Peatlands Soil	GNSVVARTEGRVSLTPGQRVTFRVQPDDIFAFHPVTGARLAG*
Ga0126384_111052902	3300010046	Tropical Forest Soil	PEGGNPIVARAEGRQPPAPGREVSLHIRPEDVFAFHPQTGARLTG*
Ga0126373_112968542	3300010048	Tropical Forest Soil	GDQVVARAEGRKPPAPGRQVTFRVQPDDVFAFHPVTGARLAG*
Ga0126373_112988322	3300010048	Tropical Forest Soil	VVARAEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARIAG*
Ga0126373_122417031	3300010048	Tropical Forest Soil	TRAEGRRPPSLGQDVALQINSADLLAFHPVTGARLAG*
Ga0126370_107955632	3300010358	Tropical Forest Soil	SVVARTEGRKPPSQGQPVTFHVQPDDVFAFHPQTGSRLVG*
Ga0126378_108836182	3300010361	Tropical Forest Soil	VARTEGRKPPAQGQPVTFHVQPDDVFAFHPQTGSRLVG*
Ga0126381_1041090361	3300010376	Tropical Forest Soil	VVARTEGRKPPAAGTGVTFRVQTDDIFAFHPVTGARLAG*
Ga0126352_12950751	3300010859	Boreal Forest Soil	VRLADGGGAVVARTEGRKTPAPGQQVAFRVQPSDVFAFHPVTGARLAG*
Ga0137383_102397891	3300012199	Vadose Zone Soil	GDPVVARAEGRKPPAQGQGVTFHVQTDDIFAFHPVTGARLAG*
Ga0137380_112130332	3300012206	Vadose Zone Soil	DDPVVARTEGRKPLAPGQGVTFHVQPDDVFAFDPATGARLAG*
Ga0137376_104261742	3300012208	Vadose Zone Soil	ARAEGRRPPAQGQPVTFNVQQDDVFAFHPETGERLIG*
Ga0164242_111689502	3300012942	Compost	GTVVARTEGRTAPAPGSKVSFRVQPGNVFAFNPRTGARL*
Ga0157373_112426642	3300013100	Corn Rhizosphere	AEGRKPPAQGQPVTFNVQTEDVFAFHPETGARLAG*
Ga0187801_100345143	3300017933	Freshwater Sediment	RTEGRRPPAPGQDVTFRVEPDDIFAFDPVTGARIAG
Ga0187778_102291191	3300017961	Tropical Peatland	VVARTEGREPAAPGQEVTSGVQPGDIFAFHPQTGARLAC
Ga0187823_101780771	3300017993	Freshwater Sediment	ALLHVRLTGDAGPVVGNTVVARTEGRKSPAPGQRVSFRAQPDNIFAFHPATGARLAG
Ga0187805_104509261	3300018007	Freshwater Sediment	RTEGRKSPAPGQRIALRVQPDDVFAFHPATGARLAG
Ga0187766_107727621	3300018058	Tropical Peatland	LAGDRTAVVARTEGREPAAPGQEVTSGVQPDDIFAFHPQTGARLAC
Ga0210385_114297902	3300021402	Soil	GGGAVVARAEGRKPPAPGQRVAFRVQSADVLAFNPATGARLAG
Ga0210389_111233091	3300021404	Soil	TEGRRPPAQGQPVTFHVQPDDVFAFHPETGNRLIG
Ga0210387_100411135	3300021405	Soil	TDQVVARTEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARLAG
Ga0210394_115025761	3300021420	Soil	HVRLVGGGDPVVARAEGRKPPAQGQPVTFHVQPDDVFAFYPATGERLIG
Ga0210390_110402172	3300021474	Soil	TEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARLAG
Ga0210398_104791641	3300021477	Soil	RTEGRKPPPPGQQVRFHVQPDDVFAFNPVTGGRLAG
Ga0210398_108953632	3300021477	Soil	AVVARAEGRKPPAPGQRVAFRVQSADVLAFNPATGARLAG
Ga0210410_104419372	3300021479	Soil	GGTVVARTEGRKSPAPGQRVALRVQPDDIFAFHPVTGARLAG
Ga0210410_106014221	3300021479	Soil	RLDDDGGAVVARTEGRKSPAPGQRVSFRVQPDDVFAFHPATGARLAG
Ga0210409_116825061	3300021559	Soil	NQVVARTEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARLAG
Ga0126371_100882831	3300021560	Tropical Forest Soil	GADALLHVRLAGTGNPVVARTEGHKPPAAGTGVTFRVQTDDIFAFHPVTGARLAG
Ga0242663_10907481	3300022523	Soil	DEGGTVVARTEGRKSPAPGQRVALRVQPDDIFAFHPVTGARLAG
Ga0242663_11226752	3300022523	Soil	DAGGTVVARTEGRRSPAPGSQATFRVRPADVFAFHPASGARLAG
Ga0242665_101768281	3300022724	Soil	LAESGDPVVARTEGRVSMSPGQKVTFHVRPEDVFAFHPVTGARLAG
Ga0207692_104452431	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AEDSGSVVARTEGRKSPAPGQRVAFRVQPDDVFAFHPATGARL
Ga0207684_105979122	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ARTEGRKPPAPGRQVTFWVRPDDAFAFNPGTGARLAG
Ga0207700_113786492	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RTEGRKFPAPGQPVALRVQPDDIFAFHPGTGARLAG
Ga0257155_10502152	3300026481	Soil	HVRLAEAGDPVVARAEGRKPPVPGQHVTFHVQPEDIFAFHPGTGARLAG
Ga0257161_10541522	3300026508	Soil	QVVARAEGRKTPAPGQKVTFRVLPEDVFAFHPVTGARLAG
Ga0179587_101463991	3300026557	Vadose Zone Soil	RTEGRKSPAPGQRVTLRVQPDDIFAFHPVTGARLAG
Ga0208731_10299421	3300027029	Forest Soil	LLHVRLADDGGAVVARTEGRKSPAPGHRVSFRVQPDDVFAFHPVTGARLAG
Ga0209218_10173352	3300027505	Forest Soil	AGGGSPVVARAEGRRPPALGQHVTFNVQPDDMFGFHPATGARLAG
Ga0209624_109067091	3300027895	Forest Soil	TVVARTEGRKSPAPGQRVALRIEPDNVLAFHPVTGARLAG
Ga0302223_101986751	3300028781	Palsa	HVRLAVDGNAVVARTEGRKPPAPGQQVRFNVQPDDVFAFHPVTGARLAA
Ga0302221_100528003	3300028806	Palsa	TEGRKPPAPGQQVRFHVEPDDVFAFHPATGARLAS
Ga0302235_101050921	3300028877	Palsa	EGGNPVVARSEGRKPPAPGRTVTFNVQRDDILAFHPATGARLAG
Ga0302235_102005142	3300028877	Palsa	AVVARTEGRKPPAPGQQVRFNVQPDDVFAFHPVTGARLAA
Ga0302235_104946051	3300028877	Palsa	TPVVARAEGRKPPAPGQQVTFRVLTTDVFAFDPVTGARLAG
Ga0302229_100285095	3300028879	Palsa	LHVRLAVDGNAVVARTEGRKPPAPGQQVRFNVQPDDVFAFHPVTGARLAA
Ga0302229_102906061	3300028879	Palsa	LHVRLAVDGNAVVARTEGRKPPAPGQQVRFNVQPDDVFAFHPATGARLAG
Ga0302229_105598801	3300028879	Palsa	NQVVARTEGRKPPAPGQEVRFNVQPDDVFAFHPVTGARLAG
Ga0308309_102017662	3300028906	Soil	RTEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARLAG
Ga0311340_100093091	3300029943	Palsa	DGNAVVARTEGRKPPAPGQQVRFNVQPDDVFAFHPATGARLAG
Ga0311340_100325701	3300029943	Palsa	DGNAVVARTEGRKPPAPGQQVRFNVQPDDVFAFHPATGARLAA
Ga0311371_106820623	3300029951	Palsa	GGSVVARAEGRKPPAPGQRVAFRVESADVLGFNPANGARLAG
Ga0302302_12752851	3300029997	Palsa	VRLAESGNPVIARTEGRKPPAPGQQVRFHVEPDDVFAFHPATGARLAS
Ga0311338_1000671024	3300030007	Palsa	ARTEGRKPPAPGQQVRFNVQPDDVFAFHPATGARLAG
Ga0302178_101074833	3300030013	Palsa	HVRLADGGGAVVARAEGRKPPAPGQRVAFRVQSADVLAFNPATGARLAG
Ga0302178_104119112	3300030013	Palsa	QVVARTEGRKPPAPGQEVRFNVQPDDVFAFHPVTGARLAG
Ga0302306_100355364	3300030043	Palsa	GNAVVARTEGRKPPAPGQEVRFHVQPDDVFAFHPVTGARLA
Ga0302182_101848342	3300030054	Palsa	LHVRLAESGNAVVARAEGRKPPIPGQKVTFHVQLEDIFAFHPGTGARLAG
Ga0302184_100344524	3300030490	Palsa	DDGGAVVARAEGRKPPAPGQRVAFAVQSADVLAFNPANGARLAG
Ga0302184_101996682	3300030490	Palsa	ARAEGRKPPPPGQRVAFRIQSADVLAFNPATGARLAG
Ga0311370_100498128	3300030503	Palsa	VVARTEGRKPPAPGQQVRFNVQPDDVFAFHPVTGARLAA
Ga0311370_112883231	3300030503	Palsa	VATPVVARAEGRKPPAPGQQVTFRVLTTDVFAFDPVTGARLAG
Ga0311356_109073282	3300030617	Palsa	TEGRKPPAPGQEVRFNVQPDDVFAFHPVTGARLAG
Ga0316363_102726121	3300030659	Peatlands Soil	RTEGRVSMAPGQKVTFHVRPEDVFAFHPVTGARLAG
Ga0075374_113032341	3300030855	Soil	RAEGRKPPTPGMHVTFHVEPDDVFAFHPGTGARLAG
Ga0170834_1021313231	3300031057	Forest Soil	SGNQVVARAEGRKPPAPGQEVTFRVQPDDVFAFNPATGARLAG
Ga0302325_105333951	3300031234	Palsa	VVARAEGRKPPAPGQRVAFAVQSADVLAFNPANGARLAG
Ga0302324_1001013561	3300031236	Palsa	ADALLHVRLPDVATPVVARAEGRKPPAPGQQVTFRVLTTDVFAFDPVTGARLAG
Ga0318571_100262512	3300031549	Soil	VACTEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARIGG
Ga0310915_105960041	3300031573	Soil	GNPMVARTEGRKPPAPGQEVTFRVQPDDIFAFHPVTGARIAG
Ga0307474_102649192	3300031718	Hardwood Forest Soil	LHVRLAESGNQVVARTEGRKPPAPGQEVTFRVLPDDVFAFHPVTGARLAG
Ga0318535_103676653	3300031764	Soil	ARAEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARIAG
Ga0318552_103778091	3300031782	Soil	ARAEGRRPPAPGQDVTFHVQPDDVFAFDPATGARIAG
Ga0318565_104453162	3300031799	Soil	VRLADGGGSVVTRTEGRKAPAPGQQVRFRVQPADVFAFHPVTGARLAA
Ga0307478_114794522	3300031823	Hardwood Forest Soil	HVRLARDGGPVVARTEGRKSPAPGQSVAFRVQPDDVLAFHPVTGARLAG
Ga0318495_100897631	3300031860	Soil	TEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARIAG
Ga0306926_103670133	3300031954	Soil	PAGGGNPMVARTEGRKPPAPGQEVTFRVQPDDVFAFHPVTGARIGG
Ga0307479_102278141	3300031962	Hardwood Forest Soil	VVARTEGRNPKAPGQRVAFRVQPEDIFAFHPTTGVRLAS
Ga0318545_102777222	3300032042	Soil	TRTEGRKAPVPGQQVRFRVQPADVFAFHPVTGARLAG
Ga0306924_100717481	3300032076	Soil	TEGRKAPVPGQQVRFRVQPADVFAFHPVTGARLAG
Ga0348332_105468661	3300032515	Plant Litter	VRLTGRTDQVVARAEGRRPPALGQHVTFNVQPDDMFGFHPVTGARLAG
Ga0335085_117406871	3300032770	Soil	GQVVARAEGRKPPAPGQQVKFHVEPEDVFAFHPGTGARLAG
Ga0370515_0014896_3_137	3300034163	Untreated Peat Soil	EDGNPVVARTEGRKPPAPGQEIRFHVQPDDVFAFHPVTGARLAG
Ga0370515_0023851_2661_2792	3300034163	Untreated Peat Soil	EDGNPVVARTEGRKPPAPGQEIRFHVQPDDVFAFHPVTGARLA
Ga0373959_0037149_1_141	3300034820	Rhizosphere Soil	LAGGGDPVVARAEGRKPPAQGQGVTFHVQTDDIFAFHPVTGARLAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097808

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences