Metagenome Family F097803

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097803
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	46 residues
Representative Sequence	GENGFDSVDAIRGLKDATHVEHIDALLRAQYVAALTEYLPGKLVQ
Number of Associated Samples	86
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	95.19 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.308 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.038 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.21% β-sheet: 0.00% Coil/Unstructured: 54.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF06826	Asp-Al_Ex	25.00
PF10011	DUF2254	6.73
PF07617	DUF1579	2.88
PF02627	CMD	2.88
PF03129	HGTP_anticodon	2.88
PF00326	Peptidase_S9	2.88
PF00215	OMPdecase	1.92
PF08450	SGL	1.92
PF02566	OsmC	1.92
PF00135	COesterase	1.92
PF07992	Pyr_redox_2	1.92
PF12833	HTH_18	0.96
PF12697	Abhydrolase_6	0.96
PF02687	FtsX	0.96
PF06964	Alpha-L-AF_C	0.96
PF07973	tRNA_SAD	0.96
PF13460	NAD_binding_10	0.96
PF10091	Glycoamylase	0.96
PF00230	MIP	0.96
PF13620	CarboxypepD_reg	0.96
PF00486	Trans_reg_C	0.96
PF00903	Glyoxalase	0.96
PF07228	SpoIIE	0.96
PF12680	SnoaL_2	0.96
PF13336	AcetylCoA_hyd_C	0.96
PF08281	Sigma70_r4_2	0.96
PF04338	DUF481	0.96
PF01329	Pterin_4a	0.96
PF00343	Phosphorylase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	25.00
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.88
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	2.88
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.88
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.88
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	2.88
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	2.88
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.92
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.92
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.92
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	1.92
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.92
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.96
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.96
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.96
COG3534	Alpha-L-arabinofuranosidase	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.04 %
Unclassified	root	N/A	25.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.04 %
Unclassified	root	N/A	25.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.04 %
Unclassified	root	N/A	25.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.31 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	13.46 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.73 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	5.77 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.96 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	5.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.96 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	5.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.96 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.96 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	5.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.96 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.96 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.96 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.96 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.96 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.96 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.96 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10138529	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300000891\|JGI10214J12806_13088067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	696	Open in IMG/M
3300001431\|F14TB_103161774	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300004114\|Ga0062593_100261150	All Organisms → cellular organisms → Bacteria → Proteobacteria	1440	Open in IMG/M
3300004114\|Ga0062593_102091990	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300004114\|Ga0062593_102173778	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300004156\|Ga0062589_102724005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300004480\|Ga0062592_101773335	Not Available	603	Open in IMG/M
3300005294\|Ga0065705_10564987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	670	Open in IMG/M
3300005295\|Ga0065707_10171024	All Organisms → cellular organisms → Bacteria → Proteobacteria	1478	Open in IMG/M
3300005354\|Ga0070675_100329155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1351	Open in IMG/M
3300005366\|Ga0070659_100914975	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005444\|Ga0070694_101958134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	501	Open in IMG/M
3300005544\|Ga0070686_100355293	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300005549\|Ga0070704_100272375	Not Available	1399	Open in IMG/M
3300005617\|Ga0068859_100176499	All Organisms → cellular organisms → Bacteria	2218	Open in IMG/M
3300005618\|Ga0068864_100085403	All Organisms → cellular organisms → Bacteria	2775	Open in IMG/M
3300005718\|Ga0068866_10813642	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005842\|Ga0068858_100793721	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300005844\|Ga0068862_101693923	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300006175\|Ga0070712_100603413	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300006178\|Ga0075367_10576350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	715	Open in IMG/M
3300006755\|Ga0079222_11713784	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006844\|Ga0075428_101570038	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300006844\|Ga0075428_101829534	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300006847\|Ga0075431_101089804	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300006880\|Ga0075429_100462551	Not Available	1112	Open in IMG/M
3300006954\|Ga0079219_11019769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300006969\|Ga0075419_10311777	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	1063	Open in IMG/M
3300007004\|Ga0079218_13957910	Not Available	503	Open in IMG/M
3300009156\|Ga0111538_13941133	Not Available	513	Open in IMG/M
3300009553\|Ga0105249_12978814	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300010397\|Ga0134124_12488558	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012212\|Ga0150985_117841537	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300012469\|Ga0150984_108244492	Not Available	609	Open in IMG/M
3300012469\|Ga0150984_115199779	Not Available	898	Open in IMG/M
3300012469\|Ga0150984_115501611	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300012898\|Ga0157293_10025227	All Organisms → cellular organisms → Bacteria → Proteobacteria	1147	Open in IMG/M
3300012898\|Ga0157293_10057351	All Organisms → cellular organisms → Bacteria → Proteobacteria	887	Open in IMG/M
3300012906\|Ga0157295_10010701	Not Available	1626	Open in IMG/M
3300012906\|Ga0157295_10089936	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300012907\|Ga0157283_10160341	Not Available	672	Open in IMG/M
3300012909\|Ga0157290_10128026	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300012913\|Ga0157298_10326998	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300012913\|Ga0157298_10425724	Not Available	513	Open in IMG/M
3300012915\|Ga0157302_10500985	Not Available	525	Open in IMG/M
3300012957\|Ga0164303_11387046	Not Available	525	Open in IMG/M
3300012958\|Ga0164299_10610426	Not Available	747	Open in IMG/M
3300012986\|Ga0164304_11612097	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300012988\|Ga0164306_10407292	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300014326\|Ga0157380_12268134	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300015258\|Ga0180093_1108275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	687	Open in IMG/M
3300015371\|Ga0132258_11405561	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1763	Open in IMG/M
3300015372\|Ga0132256_101364248	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300015372\|Ga0132256_102081227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300015372\|Ga0132256_103636664	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	518	Open in IMG/M
3300015372\|Ga0132256_103712013	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	513	Open in IMG/M
3300015373\|Ga0132257_100020476	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6960	Open in IMG/M
3300015373\|Ga0132257_102227150	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300015373\|Ga0132257_104044677	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300015374\|Ga0132255_100629029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1589	Open in IMG/M
3300017792\|Ga0163161_11477898	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300019356\|Ga0173481_10343641	Not Available	710	Open in IMG/M
3300019361\|Ga0173482_10122449	Not Available	976	Open in IMG/M
3300019362\|Ga0173479_10042929	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300023263\|Ga0247800_1085194	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300025315\|Ga0207697_10185564	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300025921\|Ga0207652_11375811	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300025923\|Ga0207681_10789837	Not Available	793	Open in IMG/M
3300025925\|Ga0207650_10215435	All Organisms → cellular organisms → Bacteria	1544	Open in IMG/M
3300025935\|Ga0207709_11028542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	674	Open in IMG/M
3300025935\|Ga0207709_11796768	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300025936\|Ga0207670_11415641	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	590	Open in IMG/M
3300025940\|Ga0207691_11115537	Not Available	656	Open in IMG/M
3300025941\|Ga0207711_11544480	Not Available	607	Open in IMG/M
3300025961\|Ga0207712_12055694	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300025981\|Ga0207640_11184876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	679	Open in IMG/M
3300026075\|Ga0207708_11049453	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300026121\|Ga0207683_11257549	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300027364\|Ga0209967_1067014	All Organisms → cellular organisms → Bacteria → Terrabacteria group	559	Open in IMG/M
3300028380\|Ga0268265_11851686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300028587\|Ga0247828_11079310	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300028809\|Ga0247824_10503421	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300028809\|Ga0247824_10847522	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031562\|Ga0310886_10470778	Not Available	753	Open in IMG/M
3300031562\|Ga0310886_10824837	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300031640\|Ga0318555_10380676	Not Available	765	Open in IMG/M
3300031765\|Ga0318554_10346316	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300031908\|Ga0310900_10169348	Not Available	1501	Open in IMG/M
3300031908\|Ga0310900_10683385	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300031911\|Ga0307412_11560279	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300031939\|Ga0308174_10056854	All Organisms → cellular organisms → Bacteria	2665	Open in IMG/M
3300031943\|Ga0310885_10794154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	537	Open in IMG/M
3300031944\|Ga0310884_10236202	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300031996\|Ga0308176_10419121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1341	Open in IMG/M
3300032012\|Ga0310902_10311012	Not Available	974	Open in IMG/M
3300032012\|Ga0310902_11216107	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300032039\|Ga0318559_10557008	Not Available	535	Open in IMG/M
3300032043\|Ga0318556_10721283	Not Available	519	Open in IMG/M
3300032067\|Ga0318524_10636845	Not Available	562	Open in IMG/M
3300032144\|Ga0315910_11262115	Not Available	577	Open in IMG/M
3300032157\|Ga0315912_10015650	All Organisms → cellular organisms → Bacteria	6302	Open in IMG/M
3300032205\|Ga0307472_102791913	Not Available	500	Open in IMG/M
3300034354\|Ga0364943_0077710	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.65%
Host-Associated	Host-Associated	41.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.69%
Plants	Host-Associated → Plants	41.35%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.35%
Sediment	Environmental → Aquatic → Sediment	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.62%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_101385292	3300000858	Soil	GANSFDSVDAIRGLKDASHVDNVDALFRAQYVASLTDYVPGKLV*
JGI10214J12806_130880672	3300000891	Soil	RGLKDATHVEHVDALLRARYVAALTDYLPGKLAS*
F14TB_1031617742	3300001431	Soil	LGVMRDGLARWIAENRFESVEAIRGLKDASRVADVDAFLRAQYVAALTDYLPGKLVQ*
Ga0062593_1002611501	3300004114	Soil	NGFDSVDAIRGLKDATHVEDVDALLRAQYVASLTEYIPGKLVQ*
Ga0062593_1020919901	3300004114	Soil	LADNRFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0062593_1021737781	3300004114	Soil	EHVATMREGLERWLGENGFDSVEAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0062589_1027240051	3300004156	Soil	GENGFASVDAIRGLKDATHVEHVDALLRAQYVAALTDYLPATIVR*
Ga0062592_1017733351	3300004480	Soil	NGFDSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0065705_105649872	3300005294	Switchgrass Rhizosphere	ANGFDSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPVRLVQ*
Ga0065707_101710241	3300005295	Switchgrass Rhizosphere	NGVQHVATMREGLERWLGANGFDSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0070675_1003291551	3300005354	Miscanthus Rhizosphere	ATMRDGLARWLGANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA*
Ga0070659_1009149751	3300005366	Corn Rhizosphere	RWLGANGFDSVDAIRGLKDATHVEHLDALFRAQYVASLTEY*
Ga0070694_1019581342	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SVDAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVQ*
Ga0070686_1003552932	3300005544	Switchgrass Rhizosphere	EGLERWLGANGFDSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ*
Ga0070704_1002723752	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	FASVEAIRGLKDATHVEHVDALFRAQYVAALTDYLPATLIR*
Ga0068859_1001764991	3300005617	Switchgrass Rhizosphere	WLADNRFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0068864_1000854031	3300005618	Switchgrass Rhizosphere	ATMRDGLARWLGANGFDSVAAIRGLKDASHVEHFDALFRAQYVASLTDYLPGKLA*
Ga0068866_108136422	3300005718	Miscanthus Rhizosphere	RWLGANGFDSVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV*
Ga0068858_1007937212	3300005842	Switchgrass Rhizosphere	WLGVNGFDSVNAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0068862_1016939231	3300005844	Switchgrass Rhizosphere	EGLERWLGANGFDSVDAIRGLKDATHVEHLDALFRAQYVASLTEY*
Ga0070712_1006034131	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EAWLGTNGFTSVEAIRGLKDATHVDQVDALLRAQYVAALTDYMPATLVR*
Ga0075367_105763501	3300006178	Populus Endosphere	VTAIRGLKDATHAEHVDALFRAQYVAALTEYLPGKLVQ*
Ga0079222_117137842	3300006755	Agricultural Soil	LESWLGENGFASVEAIRGLKDATHAEHVDALFRAQYVAALTDYLPTTPYASVRH*
Ga0075428_1015700381	3300006844	Populus Rhizosphere	GLERWLGENGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0075428_1018295342	3300006844	Populus Rhizosphere	GLDRWLSENQFESVDAIRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0075431_1010898041	3300006847	Populus Rhizosphere	ENGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0075429_1004625512	3300006880	Populus Rhizosphere	RGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0079219_110197691	3300006954	Agricultural Soil	RGLKDATHAEHVDALFRAQYVAALTEYLPATIVR*
Ga0075419_103117771	3300006969	Populus Rhizosphere	VDAIRGLKDATHVEHVDTLLRAQYVAALPEYVPGKFVQ*
Ga0079218_139579101	3300007004	Agricultural Soil	RFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0111538_139411332	3300009156	Populus Rhizosphere	MREGLERWPGENGFASVEAIRGLKDATHVEHVDALIRAQYVSALTDYLSAPVR*
Ga0105249_129788141	3300009553	Switchgrass Rhizosphere	MREGLERWLGANGFDSVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV*
Ga0134124_124885581	3300010397	Terrestrial Soil	DGLARWLGANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA*
Ga0150985_1178415371	3300012212	Avena Fatua Rhizosphere	GCVSVDAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0150984_1082444922	3300012469	Avena Fatua Rhizosphere	LERWLEANGYASVDAIRGLKDATHVEHVDALFRAQYVASLTDYVPTKLV*
Ga0150984_1151997791	3300012469	Avena Fatua Rhizosphere	LERWLDANGFASVDAIRGLKDATHVGHVDALFRAQYGASLTEYLPGKLV*
Ga0150984_1155016112	3300012469	Avena Fatua Rhizosphere	WLGANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTEYLPGKLA*
Ga0157293_100252271	3300012898	Soil	GANGFDSVDAIRGLKDASHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157293_100573512	3300012898	Soil	DAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0157295_100107012	3300012906	Soil	TMREGLECWLGANGFDSVDAIRGLKDASHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157295_100899361	3300012906	Soil	IRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0157283_101603411	3300012907	Soil	LREGLERWLGENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157290_101280262	3300012909	Soil	FESVDAIRSLKNGTHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0157298_103269981	3300012913	Soil	EGLERWLGENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157298_104257241	3300012913	Soil	VEAIRGLKDATHVEHVDALIRAQYVSALTNYLSAPVR*
Ga0157302_105009851	3300012915	Soil	LGVIRAGLERWLVDNRFDSVDAIRSLKDATHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0164303_113870461	3300012957	Soil	DSVDAIRGLKDATHVEHVDALFRAQYVASLTEYMPGKLV*
Ga0164299_106104261	3300012958	Soil	ENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYMPGKLV*
Ga0164304_116120971	3300012986	Soil	TLRDGVSRWLDANRFNSVEAIRGLKDATHAEHVDALFRAQYVAALTEYVPGKLVQ*
Ga0164306_104072922	3300012988	Soil	VEAIRGLKDATHAEHVDALFRAQYVAALTEYVPGKLVQ*
Ga0157380_122681342	3300014326	Switchgrass Rhizosphere	DAIRSLKSATHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0180093_11082753	3300015258	Soil	GVMRDGLERWLADNRFDSVDAIRSLKDATHADDADAFLRAQYVASQRDYVPGKLVQ*
Ga0132258_114055613	3300015371	Arabidopsis Rhizosphere	VDAIRGLKDGTHVEHVDALLRAQYVAALTDYLPASTVR*
Ga0132256_1013642481	3300015372	Arabidopsis Rhizosphere	GFASVEAIRGLKDATHVDQLDALLRAQYVAALTEYLPAIPIR*
Ga0132256_1020812272	3300015372	Arabidopsis Rhizosphere	SAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0132256_1036366641	3300015372	Arabidopsis Rhizosphere	TMRKGLERWLGEHGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0132256_1037120132	3300015372	Arabidopsis Rhizosphere	GFDSVDAIRGLKDGTHVEHVDALLRAQYVAALTDYLPASTVR*
Ga0132257_1000204767	3300015373	Arabidopsis Rhizosphere	DSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0132257_1022271502	3300015373	Arabidopsis Rhizosphere	RGLKDATQVEHVDALLHAQYVAALTEYVPTKLVQ*
Ga0132257_1040446771	3300015373	Arabidopsis Rhizosphere	LRHGPRHLAAMRAGLERWLEANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA*
Ga0132255_1006290291	3300015374	Arabidopsis Rhizosphere	AIRGLKDATHVEHVDALFRAQYVAALTDYLPGKLVQ*
Ga0163161_114778982	3300017792	Switchgrass Rhizosphere	PEHVATMRDGLARWLGANGFDSVAAIRGLKDASHVEHFDALFRAQYVASLTDYLPGKLA
Ga0173481_103436413	3300019356	Soil	ERWLEDNRFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0173482_101224491	3300019361	Soil	NGFDSVNAIRGLKDATHVEQVDALFRAQYVASLTEYLPGKLV
Ga0173479_100429291	3300019362	Soil	DSVAAIRGLKDASHVEHFDALFRAQYVASLTDYLPGKLA
Ga0247800_10851941	3300023263	Soil	AIRGLKDATHVDQVDALIRAQYVAALTEYLPATLGR
Ga0207697_101855642	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	GAFDSVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV
Ga0207652_113758112	3300025921	Corn Rhizosphere	ERWLGENGYDSVDAIRGLKDATHVEGVDALLRAQYVAALTEYLPGKLVQ
Ga0207681_107898372	3300025923	Switchgrass Rhizosphere	YLASLREGLERWLGENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV
Ga0207650_102154353	3300025925	Switchgrass Rhizosphere	RDGLARWLGANGFDSVDAIRGLKDASHVEHVDALFRAQYVAALTDYLPGKLVS
Ga0207709_110285421	3300025935	Miscanthus Rhizosphere	EGLERWLGANGFDSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ
Ga0207709_117967682	3300025935	Miscanthus Rhizosphere	AAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA
Ga0207670_114156411	3300025936	Switchgrass Rhizosphere	WLGENGFASVDAIRGLKDATHVEHVDALLRAQYVAALTDYLPATSVR
Ga0207691_111155371	3300025940	Miscanthus Rhizosphere	DSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ
Ga0207711_115444801	3300025941	Switchgrass Rhizosphere	WLERWLGANGFDSVNAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV
Ga0207712_120556942	3300025961	Switchgrass Rhizosphere	SVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV
Ga0207640_111848761	3300025981	Corn Rhizosphere	MREGLERWLGENGFDSVSAIRGLKDATHVEDVDALLRAQYVASLTEYLPGKLVPP
Ga0207708_110494531	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	WLADNRFDSVDAIRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0207683_112575492	3300026121	Miscanthus Rhizosphere	WLGESGFDSVDAIRGLKDATHVEQVDALLRAQYVAALTEYVPTNLGQ
Ga0209967_10670141	3300027364	Arabidopsis Thaliana Rhizosphere	MRQGLERWLDANGFTSVDAIRGLKDATHVESVDALLRAQYVAALTDYLPGKLVQ
Ga0268265_118516861	3300028380	Switchgrass Rhizosphere	GFDSVDAIRGLKDATHVEHLDALFRAQYVASLTEY
Ga0247828_110793102	3300028587	Soil	MREGLERWLEANGYDSVDAIRGLKDATHVEDIDALLRAQYVAALTDYLPGKLV
Ga0247824_105034212	3300028809	Soil	HVATMRDGLKRWLVANGFDSVDAIRGLKDATHVEHVDALIRAQYVAALTEYLPGKLVQ
Ga0247824_108475221	3300028809	Soil	PEYMGVMRDGLERWLVDNGFDSVDAIRSLKGATHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0310886_104707782	3300031562	Soil	GENGFDSVDAIRGLKDATHVEHIDALLRAQYVAALTEYLPGKLVQ
Ga0310886_108248371	3300031562	Soil	MRDGLDRWLSENQFESVDAIRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0318555_103806762	3300031640	Soil	ERWLDENGFDSVDAIRGLKDATHVENVDALLRAQYVAALTEYLPGKLIQ
Ga0318554_103463161	3300031765	Soil	LERWLDENGFDSVDAIRGLKDATHVENVDALLRAQYVAALTEYLPGKLIQ
Ga0310900_101693481	3300031908	Soil	AGLERWLEANAFDSVDAIRGLKDATHVDDVDALIRAQYVAALTEYLPGKLVQ
Ga0310900_106833852	3300031908	Soil	ENAFASVEAIRGLKDATHVDQVDALIRAQYVAALTEYLPATLGR
Ga0307412_115602792	3300031911	Rhizosphere	MREGLERWLGENGFDSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ
Ga0308174_100568543	3300031939	Soil	NRFDSVDAIRGLKDATHVEHVDALLRAQYVSALTEYLPGKLVQ
Ga0310885_107941542	3300031943	Soil	DSVDAIRGLKDATHVEHVDALLRAQYVAALTDYMPAKLVQ
Ga0310884_102362023	3300031944	Soil	GLERWLGANGFDSVDAIRGLKDATHVEGVDALLRAQYVAALTEYLPGKLVQ
Ga0308176_104191213	3300031996	Soil	AIRGLKDATHVEDVDALLRAQYVASLTEYIPGKLVQ
Ga0310902_103110122	3300032012	Soil	LGEHGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS
Ga0310902_112161072	3300032012	Soil	REGLERWLGENAFASVEAIRGLKDATHVDQVDALIRAQYVAALTEYLPATLGR
Ga0318559_105570082	3300032039	Soil	ENAFDSVDAIRGLKDATHAEDVDALLRAQYVAALTEYLPGRLVQ
Ga0318556_107212832	3300032043	Soil	REGLERWLDENGFDSVDAIRGLKDATHVENVDALLRAQYVAALTEYLPGKLIQ
Ga0318524_106368452	3300032067	Soil	TMREGLERWLGENGFDSVDAIRGLKDATHAEHVDALIRAQYVAALTEYLPGKLV
Ga0315910_112621151	3300032144	Soil	FDSVAAVRGLKDATHVEHVDALLRAQYVAALTGYLPATLAR
Ga0315912_100156501	3300032157	Soil	VAAVRGLKDATHVEHVDALLRAQYVAALTGYLPATLAR
Ga0307472_1027919131	3300032205	Hardwood Forest Soil	RWLGANGFDSVDAIRGLKDGTHVEHVDALFRAQYVASLTEYLPGKLV
Ga0364943_0077710_3_110	3300034354	Sediment	IRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097803

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences