Metagenome / Metatranscriptome Family F097802

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097802
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	50 residues
Representative Sequence	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLSRFRAWLRR
Number of Associated Samples	81
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	45.63 %
% of genes near scaffold ends (potentially truncated)	40.38 %
% of genes from short scaffolds (< 2000 bps)	83.65 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.231 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.31% β-sheet: 0.00% Coil/Unstructured: 57.69%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF03309	Pan_kinase	31.73
PF01207	Dus	18.27
PF12680	SnoaL_2	12.50
PF03449	GreA_GreB_N	2.88
PF01288	HPPK	2.88
PF00496	SBP_bac_5	1.92
PF01047	MarR	0.96
PF12802	MarR_2	0.96
PF01425	Amidase	0.96
PF07681	DoxX	0.96
PF00892	EamA	0.96
PF03098	An_peroxidase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1521	Pantothenate kinase type III	Coenzyme transport and metabolism [H]	31.73
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	18.27
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	2.88
COG0801	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis)	Coenzyme transport and metabolism [H]	2.88
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.96
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.96
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.96 %
Unclassified	root	N/A	27.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.81 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41.35 %
Unclassified	root	N/A	27.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	28.85 %
Unclassified	root	N/A	27.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.85 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	18.27 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.85 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.27 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20	3.85 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig571054	Not Available	1018	Open in IMG/M
3300000956\|JGI10216J12902_101353712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	912	Open in IMG/M
3300000956\|JGI10216J12902_111084408	Not Available	622	Open in IMG/M
3300000956\|JGI10216J12902_112776223	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300004114\|Ga0062593_100210672	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300004114\|Ga0062593_102300846	Not Available	606	Open in IMG/M
3300005093\|Ga0062594_103234357	Not Available	511	Open in IMG/M
3300005165\|Ga0066869_10110641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300005329\|Ga0070683_100038596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4379	Open in IMG/M
3300005329\|Ga0070683_100181360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1999	Open in IMG/M
3300005332\|Ga0066388_106895527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300005446\|Ga0066686_10862201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300005450\|Ga0066682_10119876	Not Available	1663	Open in IMG/M
3300005526\|Ga0073909_10014895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2434	Open in IMG/M
3300005536\|Ga0070697_101488119	All Organisms → cellular organisms → Bacteria → Terrabacteria group	605	Open in IMG/M
3300005552\|Ga0066701_10799463	Not Available	562	Open in IMG/M
3300005564\|Ga0070664_100992730	All Organisms → cellular organisms → Bacteria → Terrabacteria group	789	Open in IMG/M
3300005598\|Ga0066706_10337397	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300005713\|Ga0066905_100000046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	20467	Open in IMG/M
3300005713\|Ga0066905_100016466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3771	Open in IMG/M
3300005713\|Ga0066905_100114791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1864	Open in IMG/M
3300005719\|Ga0068861_102621112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508	Open in IMG/M
3300005764\|Ga0066903_102869575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	935	Open in IMG/M
3300005764\|Ga0066903_105769994	Not Available	650	Open in IMG/M
3300005983\|Ga0081540_1318296	All Organisms → cellular organisms → Bacteria → Terrabacteria group	534	Open in IMG/M
3300006175\|Ga0070712_100615972	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20	920	Open in IMG/M
3300006237\|Ga0097621_100074602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2810	Open in IMG/M
3300006572\|Ga0074051_11784062	Not Available	1391	Open in IMG/M
3300006573\|Ga0074055_11870204	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1938	Open in IMG/M
3300006578\|Ga0074059_11950451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	987	Open in IMG/M
3300006578\|Ga0074059_12083302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	561	Open in IMG/M
3300006579\|Ga0074054_11323775	Not Available	714	Open in IMG/M
3300006579\|Ga0074054_11990491	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300006606\|Ga0074062_12503205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300006606\|Ga0074062_12721897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	511	Open in IMG/M
3300006800\|Ga0066660_10406743	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300006881\|Ga0068865_101148771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300006903\|Ga0075426_11492265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	514	Open in IMG/M
3300006953\|Ga0074063_13681858	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300009012\|Ga0066710_102325027	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300009088\|Ga0099830_10158150	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300009137\|Ga0066709_101967642	Not Available	811	Open in IMG/M
3300009162\|Ga0075423_12770473	Not Available	537	Open in IMG/M
3300009176\|Ga0105242_10841218	Not Available	912	Open in IMG/M
3300010038\|Ga0126315_10145486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1400	Open in IMG/M
3300010047\|Ga0126382_11132303	Not Available	696	Open in IMG/M
3300010336\|Ga0134071_10585773	Not Available	582	Open in IMG/M
3300010359\|Ga0126376_10326083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1348	Open in IMG/M
3300010360\|Ga0126372_11602975	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20	690	Open in IMG/M
3300010360\|Ga0126372_13326407	Not Available	500	Open in IMG/M
3300012204\|Ga0137374_11041922	All Organisms → cellular organisms → Bacteria → Terrabacteria group	587	Open in IMG/M
3300012208\|Ga0137376_10094553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2525	Open in IMG/M
3300012355\|Ga0137369_10006205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12103	Open in IMG/M
3300012355\|Ga0137369_10009968	All Organisms → cellular organisms → Bacteria	9389	Open in IMG/M
3300012395\|Ga0134044_1233602	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012948\|Ga0126375_11867943	Not Available	526	Open in IMG/M
3300012958\|Ga0164299_10681972	Not Available	716	Open in IMG/M
3300012958\|Ga0164299_11650590	All Organisms → cellular organisms → Bacteria → Terrabacteria group	507	Open in IMG/M
3300012960\|Ga0164301_10224997	Not Available	1214	Open in IMG/M
3300012986\|Ga0164304_10967687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	671	Open in IMG/M
3300012987\|Ga0164307_10300521	Not Available	1144	Open in IMG/M
3300012988\|Ga0164306_10256929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1255	Open in IMG/M
3300012989\|Ga0164305_11152021	Not Available	669	Open in IMG/M
3300013297\|Ga0157378_13303376	Not Available	501	Open in IMG/M
3300014969\|Ga0157376_12704405	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20	536	Open in IMG/M
3300015371\|Ga0132258_10429377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3290	Open in IMG/M
3300015371\|Ga0132258_13016803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1166	Open in IMG/M
3300015371\|Ga0132258_13742440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1037	Open in IMG/M
3300015372\|Ga0132256_100577386	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300015372\|Ga0132256_101027077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	940	Open in IMG/M
3300015373\|Ga0132257_100099248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3348	Open in IMG/M
3300015373\|Ga0132257_101220147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	952	Open in IMG/M
3300015374\|Ga0132255_101733344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	948	Open in IMG/M
3300015374\|Ga0132255_104904998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300018027\|Ga0184605_10024079	All Organisms → cellular organisms → Bacteria	2466	Open in IMG/M
3300018028\|Ga0184608_10410940	All Organisms → cellular organisms → Bacteria → Terrabacteria group	587	Open in IMG/M
3300018074\|Ga0184640_10444962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	577	Open in IMG/M
3300018433\|Ga0066667_12259188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508	Open in IMG/M
3300019876\|Ga0193703_1020692	Not Available	1009	Open in IMG/M
3300021073\|Ga0210378_10001983	All Organisms → cellular organisms → Bacteria	10543	Open in IMG/M
3300022756\|Ga0222622_10052085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2318	Open in IMG/M
3300025908\|Ga0207643_10118025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1569	Open in IMG/M
3300025944\|Ga0207661_10694971	Not Available	935	Open in IMG/M
3300025945\|Ga0207679_10897067	All Organisms → cellular organisms → Bacteria → Terrabacteria group	811	Open in IMG/M
3300025945\|Ga0207679_11707751	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20	576	Open in IMG/M
3300025945\|Ga0207679_11713114	Not Available	575	Open in IMG/M
3300026078\|Ga0207702_10864187	Not Available	895	Open in IMG/M
3300026324\|Ga0209470_1216823	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300027587\|Ga0209220_1074512	Not Available	898	Open in IMG/M
3300027795\|Ga0209139_10290632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300027821\|Ga0209811_10041438	Not Available	1553	Open in IMG/M
3300028716\|Ga0307311_10210512	Not Available	572	Open in IMG/M
3300028718\|Ga0307307_10184173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300028768\|Ga0307280_10368151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300028771\|Ga0307320_10005520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4494	Open in IMG/M
3300028778\|Ga0307288_10045163	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300028791\|Ga0307290_10366696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300028807\|Ga0307305_10008021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4585	Open in IMG/M
3300028875\|Ga0307289_10463148	All Organisms → cellular organisms → Bacteria → Terrabacteria group	521	Open in IMG/M
3300028878\|Ga0307278_10043914	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300028878\|Ga0307278_10110286	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300028878\|Ga0307278_10450777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300028885\|Ga0307304_10368838	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.92%
Host-Associated	Host-Associated	23.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.15%
Plants	Host-Associated → Plants	23.08%
Aquatic	Environmental → Aquatic	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.58%
Sediment	Environmental → Aquatic → Sediment	3.85%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.62%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012395	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_05704740	2124908045	Soil	VPKPVYWKPKYPTRIMRERAFAKRQLARDERLRAEQSPSLAARLRAWLRR
JGI10216J12902_1013537123	3300000956	Soil	VPKPVYWKPKYPTRVMRERAFAKQQAAREERLQAERPPSLIARLRDWLRR*
JGI10216J12902_1110844082	3300000956	Soil	VPKPIYWKPKYPTRVMRERAFAKQQAGRDERLRADRSPALLTRFRAWLRR*
JGI10216J12902_1127762233	3300000956	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRSPSLLGRFRAWLRR*
Ga0062593_1002106722	3300004114	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAAHEERLRAERPPSLVSRFRAWLRR*
Ga0062593_1023008462	3300004114	Soil	VPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSPLSRFRAWLRR*
Ga0062594_1032343572	3300005093	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDDQLRADRPPSLLGRFRAWLLS*
Ga0066869_101106411	3300005165	Soil	LGLAVPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLRR*
Ga0070683_1000385963	3300005329	Corn Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR*
Ga0070683_1001813602	3300005329	Corn Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR*
Ga0066388_1068955271	3300005332	Tropical Forest Soil	PVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLARFRAWLRS*
Ga0066686_108622011	3300005446	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARLRAWL
Ga0066682_101198763	3300005450	Soil	VPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAWLRR*
Ga0073909_100148953	3300005526	Surface Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLHR*
Ga0070697_1014881192	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VRRPVYWKPAYPTRVMRERAFAKRQRARDEALARERGPSLVQRLRELLRRGGGA*
Ga0066701_107994632	3300005552	Soil	MPRPVIWKPRYPTRVMRERAFAKQQLAREQALEATRPPSLRSRFVAWLKR*
Ga0070664_1009927302	3300005564	Corn Rhizosphere	VYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR*
Ga0066706_103373972	3300005598	Soil	VPRPVYWKPKYPTRRMRERAFVKQQLAREESLRAAAPPSLLARFRAWLKR*
Ga0066905_1000000467	3300005713	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKQQAARDELLRAERPPSLVARFRAWLRR*
Ga0066905_1000164664	3300005713	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERPPSLLRRFRDWLRR*
Ga0066905_1001147912	3300005713	Tropical Forest Soil	VPRPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSLLTRFRAWLRR*
Ga0068861_1026211122	3300005719	Switchgrass Rhizosphere	VPRPVYWKPKYPTRVMRERAFAKRQSARDERLRAERPPSLATRLRAWLRR*
Ga0066903_1028695753	3300005764	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLARFRAWLRS*
Ga0066903_1057699942	3300005764	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSVVSRFRAWLQR*
Ga0081540_13182962	3300005983	Tabebuia Heterophylla Rhizosphere	VPKPVYWKPKHPTRVMRERAFAKRQAARDERLRAERPPSLASRLRAWLSR*
Ga0070712_1006159722	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRTPSLFARFRAWLRR*
Ga0097621_1000746023	3300006237	Miscanthus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKGQAARDEQLRADRPPSLLGRFRAWLLS*
Ga0074051_117840621	3300006572	Soil	KPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARFRDWLRR*
Ga0074055_118702043	3300006573	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLHR*
Ga0074059_119504511	3300006578	Soil	VPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLLR*
Ga0074059_120833022	3300006578	Soil	YWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLHR*
Ga0074054_113237751	3300006579	Soil	LHLRRRLVPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSFAVRFLAWLHR*
Ga0074054_119904913	3300006579	Soil	KPVYWKPKYPTRVMRERAFARRQAARDERLRAERPPSLAARFRDWLRR*
Ga0074062_125032052	3300006606	Soil	FEDRVPLGLAVPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLRR
Ga0074062_127218972	3300006606	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLYR*
Ga0066660_104067433	3300006800	Soil	VRPRPVIWKPRYPTRVMRERAWAKQDLARAEAAEGARKRSRLGRLWARLFRST*
Ga0068865_1011487712	3300006881	Miscanthus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKGQAARDERLRAERPPSLATRLRAWLHR*
Ga0075426_114922652	3300006903	Populus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSFLARFRDWLRR*
Ga0074063_136818581	3300006953	Soil	HPVGLDVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLYR*
Ga0066710_1007591051	3300009012	Grasslands Soil	HLGLPMAPVYWKPRYPTRRMRERAFAKQELARERAIKRSPRHPSWLDRFRDWLRR
Ga0066710_1023250272	3300009012	Grasslands Soil	MPRPVIWKPRYPTRVMRERAFAKQQLAREEALKATRPPSLLSRFRAWLRR
Ga0099830_101581502	3300009088	Vadose Zone Soil	VADVPKPIYWKPRYPTRVMRERAFAKRQLAREQALKATRPPSLLSRFRAWLKR*
Ga0066709_1019676422	3300009137	Grasslands Soil	MPRPVIWKPRYPTRVMRERAFAKQQLAREEALKATRPPSLLSRFRAWLRR*
Ga0075423_127704731	3300009162	Populus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR*
Ga0105242_108412181	3300009176	Miscanthus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLLGRFRAWLLS*
Ga0126315_101454862	3300010038	Serpentine Soil	MPRPVYWKPRYPTRVMRERVFARRQLARDEALSRQAGPSFLERLRKLLRGGE*
Ga0126382_111323032	3300010047	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKRQAAREELLRAERPPSLLARFRAWLSR*
Ga0134071_105857732	3300010336	Grasslands Soil	PVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARLRAWLRR*
Ga0126376_103260831	3300010359	Tropical Forest Soil	AVPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLMRFRAWLRR*
Ga0126372_116029751	3300010360	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKRQAAREERLRAERPPSLVSRFRAWLHR*
Ga0126372_133264071	3300010360	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAW
Ga0137374_110419221	3300012204	Vadose Zone Soil	MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRRPAGPSLLERLRKRLRRGGE*
Ga0137376_100945535	3300012208	Vadose Zone Soil	VPPPRPVYWKPRYPTRVMRERAFAKRQLAQEEALRNARG
Ga0137369_100062056	3300012355	Vadose Zone Soil	MPVYWKPRYPTRVMRERAFAKRQRARDEALRRPAGPSLLERLRKRLRRGVNR*
Ga0137369_1000996811	3300012355	Vadose Zone Soil	ARPDGGTASGALVPRPVYWKPRYPTRVMRERAFAKRQLAREETLHRAGRPSLLRRLRSWLHR*
Ga0134044_12336022	3300012395	Grasslands Soil	RLVPRPVIWKPKYPTRVMRERAFAKQQLAREQELRREPRTSPLSRLRAWLGW*
Ga0126375_118679431	3300012948	Tropical Forest Soil	VPKPVYWKPKYPTRVMRERAFAKRQAAREELLRAERPPSLLARFRAW
Ga0164299_106819722	3300012958	Soil	MPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERSPSLATRLRDWLRT*
Ga0164299_116505901	3300012958	Soil	VPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSPLSRFRAWLR
Ga0164301_102249972	3300012960	Soil	VPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSL
Ga0164304_109676872	3300012986	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSPLSRFRAWLRR*
Ga0164307_103005211	3300012987	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRF
Ga0164306_102569292	3300012988	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLNR*
Ga0164305_111520212	3300012989	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLSRFRAWLRR*
Ga0157378_133033762	3300013297	Miscanthus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPKSLFRRFRAWLLS*
Ga0157376_127044052	3300014969	Miscanthus Rhizosphere	YWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR*
Ga0132258_104293773	3300015371	Arabidopsis Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERSPSLLTRLRDWLRR*
Ga0132258_130168032	3300015371	Arabidopsis Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERSSSLLSRFRAWLRR*
Ga0132258_137424403	3300015371	Arabidopsis Rhizosphere	LRRRLVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLVSRFRAWLRR*
Ga0132256_1005773861	3300015372	Arabidopsis Rhizosphere	GLAVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR*
Ga0132256_1010270773	3300015372	Arabidopsis Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERP
Ga0132257_1000992483	3300015373	Arabidopsis Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPTSLLARFRAWLRR*
Ga0132257_1012201471	3300015373	Arabidopsis Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRA
Ga0132255_1017333441	3300015374	Arabidopsis Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPP
Ga0132255_1049049981	3300015374	Arabidopsis Rhizosphere	LAVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR*
Ga0184605_100240795	3300018027	Groundwater Sediment	MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0184608_104109402	3300018028	Groundwater Sediment	VRPVYWKPKYPTRVMRERAFAKRQRARDEALRREAGPSLLERLRGRLRRDGA
Ga0184640_104449621	3300018074	Groundwater Sediment	VPKPVYWKPKYPTRVMRERAFANQQAARDERLRAERPPSLATRLRAWL
Ga0066667_122591882	3300018433	Grasslands Soil	VSPPVPRPVYWKPKYPTRRMRERAFVKQQLAREESLRAAAPPSLLARFRAWLKR
Ga0193703_10206921	3300019876	Soil	VYWKPKYPTRVMRERAFAKRQAARDERLRADRPPSLATRLRAWLRR
Ga0210378_1000198310	3300021073	Groundwater Sediment	MPRPVYWKPRYPTRVMRERAFASRQRARDEALRRPAGPSLLERLRKLLRRGGE
Ga0222622_100520853	3300022756	Groundwater Sediment	VPKPVYWKPKYPTRVMRERAFAKRQAARDERLRADRPPSLATRLRAWLRR
Ga0207643_101180253	3300025908	Miscanthus Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKRQAARDDQLRADRPPSLLGRFRAWLLS
Ga0207661_106949712	3300025944	Corn Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR
Ga0207679_108970671	3300025945	Corn Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR
Ga0207679_117077512	3300025945	Corn Rhizosphere	RRIGLRVSIGVTVPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR
Ga0207679_117131142	3300025945	Corn Rhizosphere	VPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLV
Ga0207702_108641872	3300026078	Corn Rhizosphere	VPKPIYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR
Ga0209470_12168232	3300026324	Soil	VPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAWLRR
Ga0209220_10745121	3300027587	Forest Soil	LADLHLRRGLVPRPIYWKPKYPTRVMRERAFAKRQRAREEALRASAPPSVLTRFRAWLQR
Ga0209139_102906322	3300027795	Bog Forest Soil	LNRRPVYWKPKYPTRVMRERAFAKRSLERERQLAATRGPSPFAKLRAWFTRRL
Ga0209811_100414382	3300027821	Surface Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLHR
Ga0307311_102105122	3300028716	Soil	PVYWKPKYPTRVMRERAFAKRQVARDERLRAERSPSVLARLRAWLRR
Ga0307307_101841732	3300028718	Soil	RLVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLFGRFRAWLLS
Ga0307280_103681512	3300028768	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLTERLRAWLRR
Ga0307320_100055204	3300028771	Soil	MPRPVYWKPRYPTRVMRERAFAKRQRMRDEALRRQAGPSLLDRLRELLRRDGA
Ga0307288_100451633	3300028778	Soil	VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLFGRFRAWLLS
Ga0307290_103666962	3300028791	Soil	YWKPRYPTRVMRERAFANRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0307305_100080217	3300028807	Soil	DPMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0307289_104631481	3300028875	Soil	MPRPVYWKPKYPTRVMRERAFAKRQLARDERLRAERSPSVLA
Ga0307278_100439144	3300028878	Soil	MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSILERLRKLLGRGRE
Ga0307278_101102862	3300028878	Soil	MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRRQAGPSLLERLRKRLQRGGE
Ga0307278_104507771	3300028878	Soil	AVDDPMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0307304_103688381	3300028885	Soil	IPRPVYWKPKYPTRVMRERAFGKRQRARDEALRASSPPSALSRLRDWLRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097802

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences