Metagenome / Metatranscriptome Family F097798

Basic Information
Family ID	F097798
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	GIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.00 %
% of genes near scaffold ends (potentially truncated)	17.31 %
% of genes from short scaffolds (< 2000 bps)	19.23 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (80.769 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.577 % of family members)
Environment Ontology (ENVO)	Unclassified (19.231 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.308 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.62% β-sheet: 15.38% Coil/Unstructured: 60.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF05717	TnpB_IS66	51.92
PF13007	LZ_Tnp_IS66	28.85
PF13817	DDE_Tnp_IS66_C	4.81
PF01527	HTH_Tnp_1	1.92
PF00589	Phage_integrase	1.92
PF13683	rve_3	1.92
PF13601	HTH_34	0.96
PF07715	Plug	0.96
PF13737	DDE_Tnp_1_5	0.96
PF03050	DDE_Tnp_IS66	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3436	Transposase	Mobilome: prophages, transposons [X]	52.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
All Organisms	root	All Organisms	19.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
cellular organisms	root	All Organisms → cellular organisms	19.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	3.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.92 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.96 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_109599153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1497	Open in IMG/M
3300001546\|JGI12659J15293_10069977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	776	Open in IMG/M
3300001990\|JGI24737J22298_10208779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300002245\|JGIcombinedJ26739_100198639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1896	Open in IMG/M
3300004082\|Ga0062384_101286535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	535	Open in IMG/M
3300005459\|Ga0068867_101393508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300006059\|Ga0075017_101136019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300006354\|Ga0075021_10430956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	830	Open in IMG/M
3300012915\|Ga0157302_10140458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300014169\|Ga0181531_10675959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300014493\|Ga0182016_10319933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300015373\|Ga0132257_102002710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300016422\|Ga0182039_11753749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300022756\|Ga0222622_11115482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300027737\|Ga0209038_10182495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300028709\|Ga0307279_10018192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	941	Open in IMG/M
3300030677\|Ga0302317_10199500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	920	Open in IMG/M
3300031128\|Ga0170823_17159537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300031719\|Ga0306917_10494647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	960	Open in IMG/M
3300031893\|Ga0318536_10074335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1676	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.69%
Host-Associated	Host-Associated	17.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.31%
Plants	Host-Associated → Plants	17.31%
Aquatic	Environmental → Aquatic	15.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.69%
Freshwater	Environmental → Aquatic → Freshwater	9.62%
Peat	Environmental → Terrestrial → Peat	8.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.65%
Sediment	Environmental → Aquatic → Sediment	5.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.85%
Peat Moss	Host-Associated → Plants → Peat Moss	3.85%
Geologic	Environmental → Terrestrial → Geologic	0.96%
Phylloplane	Host-Associated → Plants → Phylloplane	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.62%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Mine	Environmental → Terrestrial → Geologic → Mine	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.96%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.96%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027119	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027504	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034127	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_16	Environmental	Open in IMG/M
3300034143	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 57SNS	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1095991534	3300000955	Soil	TVQRASSAAAGIEVKLAGAVVRVSSGMDDADQLTVVLRAIRASASRS*
JGI12648J13191_10174013	3300001084	Forest Soil	PPGIEVELAGAVVRVSSGMEDAAQLTAVLRAVRASAFRS*
JGI12659J15293_100699771	3300001546	Forest Soil	PASVPRAASAPVIEVKLAGAVVRVAAGMDDATQLTAVLRAVRASASRT*
JGI12053J15887_102442543	3300001661	Forest Soil	TVPDAAAPVIEVRLAGAVVRVTSGMEDAAQLTAVLRAIRASASRT*
C688J18823_100741643	3300001686	Soil	IEVRLAGAVVCVVPGLDDAQLTAVLRAVRASVLRP*
JGI12627J18819_102350811	3300001867	Forest Soil	RAASGAPGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS*
JGI24737J22298_102087792	3300001990	Corn Rhizosphere	AATVQRTASAAPGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS*
JGIcombinedJ26739_1000908714	3300002245	Forest Soil	VPRAAPAPVIEVKLAGAVVRVAAGMDDATQLTAVLRAVRASASRT*
JGIcombinedJ26739_1001986393	3300002245	Forest Soil	MVQRTASAAPGIEVELAGAVVRISSGMDDAGQLTAVLRAVRASASRT*
Ga0062384_1012865352	3300004082	Bog Forest Soil	MFLRRVAEHRLPSTAPAIEVKLAGAVVRVACGMDGALLTVVLRAVRAS*
Ga0062386_1010281731	3300004152	Bog Forest Soil	ATPAIEVKLAGAVVRVVSGMDDATRLTAVLRAVRASASQT*
Ga0068869_1019467291	3300005334	Miscanthus Rhizosphere	AEATAPTIEIRLAGAVVRVGSGMDDTAQLTAVLRAVRASASRT*
Ga0070701_101649293	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	AAASAAPVIEVKLAGAVVRVVSNVDDVARLTAVLRAVRASASRA*
Ga0070711_1017447581	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ATTVIEVRLAGAVVRVGSDLNDAAPLTAVLRAVRAPASRS*
Ga0068867_1013935081	3300005459	Miscanthus Rhizosphere	ATVQRTASAAPGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS*
Ga0068857_1001509963	3300005577	Corn Rhizosphere	VIEVKLAGAVVRVVSNVDDVARLTAVLRAVRASASRP*
Ga0068856_1004761001	3300005614	Corn Rhizosphere	SVIEVKLAGAVVRVVSNVDDVARLTAVLRAVRASASRP*
Ga0074479_110130561	3300005829	Sediment (Intertidal)	TPPVIEVGLAGAVVRVVAGMDDIARLTAVLRAVRASASPG*
Ga0068863_1007081011	3300005841	Switchgrass Rhizosphere	APSPASAATVIEVRLAGAVVRVGSDLNDAVPLTAVLRAVRAPASRS*
Ga0070766_106778643	3300005921	Soil	IEVKLAGAVVRVAAGMDDATQLTAVLRAVRASASRT*
Ga0066787_101573921	3300005950	Soil	IEVRLAGAVVRISGIDDGAQLTAVLRAVRASASKG*
Ga0066789_100922483	3300005994	Soil	VAPVIEVRLAGAVVRISGIDDGAQLTAVLRAVRASASKG*
Ga0066789_102840793	3300005994	Soil	AASVIEVRLAGAVVRVTSGMDDAAQLTAVLRAIRASASRT*
Ga0075024_1002909213	3300006047	Watersheds	PGIEVELAGAVVRISSGMDDAGQLTAVLRAVRASASRT*
Ga0075017_1011360191	3300006059	Watersheds	VKLAGAVVRVAGGMDDAAQLTAVLRAVRASASRT*
Ga0075015_1002208761	3300006102	Watersheds	VPRASPAPVIEVKLAGAVVRVAAGMDDATQLTAVLRAVRASASRT*
Ga0070712_1006549143	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ASAAPGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS*
Ga0075021_104309561	3300006354	Watersheds	PTVPRAAPAPVIEVKLAGAVVRVAAGMDDATQLTAVLRAVRASASRT*
Ga0079221_108922653	3300006804	Agricultural Soil	LASPVIEVRLAGAVVRVVSGLDEAQLTAVLRAVRASVLRA*
Ga0105245_112106211	3300009098	Miscanthus Rhizosphere	STPSPPVIEVRLAGAVVRVAPGMDNTAQLTAVLRAIRASASRT*
Ga0116230_100935332	3300009510	Host-Associated	VIEVKLAGAVVRVVSGSDDGTQLAAVLRAVRASATGK*
Ga0116230_103780671	3300009510	Host-Associated	PPRAAAAIAPVIEVKLAGAVVRVSGIDDGAQLTAVLRAVRASASKG*
Ga0105855_11038601	3300009649	Permafrost Soil	VPVIEVRLAGAVVRVMSGAIDAAQLTAVLRALRASASRT*
Ga0116228_104403123	3300009701	Host-Associated	AAVIEVKLAGAVVRVVSGSDDGTQLAAVLRAVRASVTGK*
Ga0116227_100650016	3300009709	Host-Associated	ARKAGAAPIIEVKLAGATVRVSELGDGAELTAVLRAIRASAAKA*
Ga0126313_107032193	3300009840	Serpentine Soil	VIEVRLAGAVVRVVSGLDDAQLTTVLRAVRASVLRA*
Ga0126314_107209021	3300010042	Serpentine Soil	EHAAIEVELADAVVRVVPGVDDGLLAAVLRAVRASAA*
Ga0126310_105154931	3300010044	Serpentine Soil	VASPVIEVSLAGAVVRVVSGLDDAQLTTVLRAVRASVLRA*
Ga0126310_117386152	3300010044	Serpentine Soil	ASAAIEIRLAGAVVRADPGTDAEQLTAVLRAVRRSAAPS*
Ga0074044_109460271	3300010343	Bog Forest Soil	VIEVRLAGAVVRITSSMDDAAQLTAVLRAIRASASRA*
Ga0126378_102525631	3300010361	Tropical Forest Soil	GIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASALRS*
Ga0058701_107727592	3300010395	Agave	VLARPVIEVRLAGAVVRVVSGPDDAQLTAVLRAIRASVLRA*
Ga0137398_105218623	3300012683	Vadose Zone Soil	PVIEIKLAGAVVRVGSSMDDAAVLTTVLRAVRASASSA*
Ga0157302_101404583	3300012915	Soil	STRAAPSVPVIEVKLAGAVVRVVGGQHDGSQLTAVLRAVRASASRS*
Ga0168317_10673641	3300012982	Weathered Mine Tailings	EVKLAGAVVRVVSGLEDDAQLTAVLRAVRASASKP*
Ga0164308_110477871	3300012985	Soil	TVIEVKLAGAVVRIGSDLSDAGPLTTVLRAVRASASRT*
Ga0181531_106759591	3300014169	Bog	ETVPHAEAVAPMIEIRLAGAVVRVVSGMDDAAQLTAVLRAVRASASRA*
Ga0181537_106274253	3300014201	Bog	VPIVSAATRPAPGPRMTPAASVIEVQLAGAVVRVSGLGDGAELAVVLRAIRASASEG*
Ga0182016_103199331	3300014493	Bog	VTTVPPTSAPVIEVRLAGAVVRVVCDMDDTAQLTAVLRAVRASASRA*
Ga0167644_11685101	3300015206	Glacier Forefield Soil	IEIKLAGAVVRVVSGMDDAAQLTAVLRAVRASASRT*
Ga0132256_1001348341	3300015372	Arabidopsis Rhizosphere	EVKLAGAVVRVSSGMDDADQLTVVLRAIRASASRS*
Ga0132257_1020027103	3300015373	Arabidopsis Rhizosphere	QRAASAAWGIEGELAGAVVRGSSGIDDAAQLIAVLRAVRALASP*
Ga0132257_1030402731	3300015373	Arabidopsis Rhizosphere	AATVIEVRLAGAVVRVGSDLNDAVPLTAVLRAVRAPASRS*
Ga0182039_110317481	3300016422	Soil	RAAPARGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASALRS
Ga0182039_117537492	3300016422	Soil	ATVQRAASVAREIEVKLAGAVVRVSPGMADAEQLTAVLRAIRASASRS
Ga0187879_100610991	3300017946	Peatland	IEIRLAGAVVRVVSGMDDAAQLTAVLRAVRASASRA
Ga0187847_102308763	3300017948	Peatland	SAAPAIEVKLAGAVVRVVSGMDDATRLTSVLRAVRASASRR
Ga0181520_105467193	3300017988	Bog	EVRLAGAVVRVVSGLEDDARLTAVLRAVRASASKG
Ga0187855_101886301	3300018038	Peatland	PSAAPAIEVKLAGAVVRVVSGMDDATRLTSVLRAVRASASRR
Ga0187858_102927763	3300018057	Peatland	MTPEPPVIEVRLAGAVVRVVSGADDPAQLTAVLRAVRASASR
Ga0190275_129838431	3300018432	Soil	SPATTVTTKIEVKLAGAVVRVGSDLSDAGPLTAVLRAVRASASRT
Ga0190270_112737511	3300018469	Soil	APGIEVKLAGAVVRVSSGMDDAVQLTAVLRAVRASASRS
Ga0190267_101439471	3300019767	Soil	PVIEVRLAGAVVRVVSGLDDAQLTAVLRAVRASVLRA
Ga0190267_102095573	3300019767	Soil	VIEVRLADAVVRVVSGLDDAQLTAVLRAVRASASPA
Ga0210405_102454931	3300021171	Soil	EVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Ga0193699_102423691	3300021363	Soil	AASTASGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Ga0210386_114130633	3300021406	Soil	PAIEVKLAGAVVRVASGMDDAAQLTVVLRAVRASASRA
Ga0222622_111154822	3300022756	Groundwater Sediment	TVQRTASVAPGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Ga0247794_100836273	3300024055	Soil	APVIEVKLAGAVVRVVSGLEDGAQLTAVLRAVRASASRP
Ga0209109_100438304	3300025160	Soil	SLEGAPAATSAPMIAVEIAGAVVRVVRGIDGALLTSVLRAVRASAA
Ga0209002_101252083	3300025289	Soil	LSLEGAPAATSAPMIAVEIAGAVVRVVRGIDGALLTSVLRAVRASAA
Ga0207694_109808481	3300025924	Corn Rhizosphere	AASVIEVKLAGAVVRVVSNVDDVAWLTAVLRAVRASASRP
Ga0207709_114156681	3300025935	Miscanthus Rhizosphere	QCTASAAPGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Ga0207702_103257311	3300026078	Corn Rhizosphere	AASVIEVKLAGAVVRVVSNVDDVARLTAVLRAVRASASRP
Ga0207855_10219271	3300027039	Tropical Forest Soil	RIVVHGVDAPGIAGAVVRVSPGLDDAAQLTAVLRAIRASASRS
Ga0209522_10047901	3300027119	Forest Soil	MPPSAAPAIEVKVAGAVVRVVSGMDDAAQLTAVLRAVRASASRT
Ga0209114_10032171	3300027504	Forest Soil	AIEVKLAGAVVRVASGIDDAAQLTAVLRAVRASASRR
Ga0209038_101824951	3300027737	Bog Forest Soil	SSAAPAIEVKLAGAVVRVASGMDDAAQLTAVLRAVRASASRT
Ga0209275_100106361	3300027884	Soil	IEVKLAGAVVRVACGMDGALLTAVLRAVRASASRT
Ga0307279_100181921	3300028709	Soil	TTVQRAASAASGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Ga0307318_100620143	3300028744	Soil	GIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Ga0307316_100201171	3300028755	Soil	IEVKLAGAVVRVSSGMDDAAQLTAVLRAVRVSASRS
Ga0302232_105774862	3300028789	Palsa	PHAEAVAPMIEIRLAGAVVRVVSGMDDAAQLTAVLRAVRASASRA
Ga0311329_106734931	3300029907	Bog	MRRAAPAVPVIEVKLAGAVVHVSEPGDGVALTAVLRAIRASVVKA
Ga0311352_104876993	3300029944	Palsa	PSTAPAIEVKLVGAVVRVACGMDGALLTAVLRAVRASASRT
Ga0311334_112178693	3300029987	Fen	PAAPACIEITLSGAVLRVVPGTDSAQLAAVLRAVRASATRS
Ga0302178_101822522	3300030013	Palsa	MIEIRLAGAVVRVVSGMDDAAQLTAVLRAVRASASRA
Ga0311372_121847783	3300030520	Palsa	KAAASPVIEVMLAGAVVRVSGLGDDAELTCVLRAIRASASNA
Ga0302317_101995001	3300030677	Palsa	RAAGPRAALALPVIEVKLAGAVIRVVSGSDDGTQLAAVLRAVRASAAEK
Ga0308183_10477093	3300030988	Soil	VIEVRLAGAVVRVVSGLDDTQLTAVLRAVRASALRA
Ga0170823_171595371	3300031128	Forest Soil	TVQRATSAALGIEVKLAGAVVRVSSGMDDAAQLTAVLRAVRASASRS
Ga0302323_1034729042	3300031232	Fen	PPASVAAATAPVIEVRLAGAVVRVSGIDDGAQLTAVLRAVRASASKG
Ga0302324_1024267351	3300031236	Palsa	TGPAPRSRMASAASVIEVELAGAVVRVSGLGDGAELTAVLRAIRASASEG
Ga0318496_105537003	3300031713	Soil	IEVRLAGAVVRIASDVDDTAQLTAVLRAIRASASGT
Ga0307476_100857444	3300031715	Hardwood Forest Soil	APAIEVKLAGAVVRVASGIDDATQLTAVLRAVRASASRT
Ga0306917_104946471	3300031719	Soil	ATVQRAASVTPEIEVKLAGAVVRVSAGMADAAQLTAVLRAVRASASRS
Ga0318517_101329423	3300031835	Soil	PAPVIEVRLAGAVVRIASDVDDTAQLTAVLRAIRASASGT
Ga0318536_100743354	3300031893	Soil	VQRAASVTPEIEVKLAGAVVRVSAGMADAAQLTAVLRAVRASASRS
Ga0335085_105460132	3300032770	Soil	ELPSRAAAAVAPVIEVKLAGAVVRVSGIDDDAQLTAVLRAVRASASKG
Ga0335083_113835962	3300032954	Soil	VVEVKLAGAVVRVSGIDDDAQLTAVLRAARASASKG
Ga0370489_0042394_1207_1314	3300034127	Untreated Peat Soil	EVKLAGAVVRVASNMDDAAQLTAVLRAVRASASPT
Ga0334961_079238_65_181	3300034143	Sub-Biocrust Soil	MERAAVEVEIAGAVVRVLPGVDDGPLTAVLRAVRASAA
Ga0372943_0093105_1612_1734	3300034268	Soil	LATSVIEINLAGAVVRVVSGLDDAQLTAVLRAVRASALRA
Ga0372946_0620669_395_523	3300034384	Soil	PRSVAAVVEIQLADAVVRVASGIDGALLTAVLRAVRASASRA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097798

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign