Metagenome / Metatranscriptome Family F097796

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097796
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	48 residues
Representative Sequence	MQDDLVGRAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD
Number of Associated Samples	78
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.50 %
% of genes near scaffold ends (potentially truncated)	29.81 %
% of genes from short scaffolds (< 2000 bps)	80.77 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.269 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.846 % of family members)
Environment Ontology (ENVO)	Unclassified (37.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.769 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.97% β-sheet: 0.00% Coil/Unstructured: 41.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13419	HAD_2	11.54
PF06262	Zincin_1	4.81
PF06210	DUF1003	3.85
PF02826	2-Hacid_dh_C	2.88
PF08241	Methyltransf_11	2.88
PF13539	Peptidase_M15_4	2.88
PF02769	AIRS_C	1.92
PF09471	Peptidase_M64	1.92
PF13560	HTH_31	1.92
PF05378	Hydant_A_N	1.92
PF00196	GerE	1.92
PF03734	YkuD	0.96
PF10604	Polyketide_cyc2	0.96
PF01728	FtsJ	0.96
PF12844	HTH_19	0.96
PF02738	MoCoBD_1	0.96
PF13683	rve_3	0.96
PF09995	MPAB_Lcp_cat	0.96
PF13413	HTH_25	0.96
PF01479	S4	0.96
PF01161	PBP	0.96
PF12679	ABC2_membrane_2	0.96
PF02369	Big_1	0.96
PF06271	RDD	0.96
PF03640	Lipoprotein_15	0.96
PF00389	2-Hacid_dh	0.96
PF08669	GCV_T_C	0.96
PF00118	Cpn60_TCP1	0.96
PF12680	SnoaL_2	0.96
PF13474	SnoaL_3	0.96
PF05368	NmrA	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	4.81
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	3.85
COG4420	Uncharacterized membrane protein	Function unknown [S]	3.85
COG0293	23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ	Translation, ribosomal structure and biogenesis [J]	0.96
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1189	Predicted rRNA methylase YqxC, contains S4 and FtsJ domains	Translation, ribosomal structure and biogenesis [J]	0.96
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.96
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.96
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.96
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	48.08 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.19 %
Unclassified	root	N/A	31.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	34.62 %
Unclassified	root	N/A	31.73 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	32.69 %
Unclassified	root	N/A	31.73 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.96 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.69 %
Unclassified	root	N/A	31.73 %
Peptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	0.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.69 %
Unclassified	root	N/A	31.73 %
Desulfosporosinus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.69 %
Unclassified	root	N/A	31.73 %
unclassified Desulfosporosinus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → unclassified Desulfosporosinus	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.69 %
Unclassified	root	N/A	31.73 %
Desulfosporosinus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → unclassified Desulfosporosinus → Desulfosporosinus sp.	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000887\|AL16A1W_10018922	Not Available	540	Open in IMG/M
3300000887\|AL16A1W_10160830	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300000956\|JGI10216J12902_101605911	Not Available	856	Open in IMG/M
3300000956\|JGI10216J12902_114335805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	802	Open in IMG/M
3300005164\|Ga0066815_10095551	Not Available	552	Open in IMG/M
3300005172\|Ga0066683_10257466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1082	Open in IMG/M
3300005174\|Ga0066680_10059248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2269	Open in IMG/M
3300005174\|Ga0066680_10068404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2121	Open in IMG/M
3300005180\|Ga0066685_10451018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	893	Open in IMG/M
3300005181\|Ga0066678_10611866	Not Available	725	Open in IMG/M
3300005181\|Ga0066678_10745134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300005181\|Ga0066678_10872946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300005187\|Ga0066675_10313703	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300005445\|Ga0070708_100020551	All Organisms → cellular organisms → Bacteria	5569	Open in IMG/M
3300005446\|Ga0066686_10435936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	895	Open in IMG/M
3300005451\|Ga0066681_10380237	Not Available	868	Open in IMG/M
3300005467\|Ga0070706_100120092	All Organisms → cellular organisms → Bacteria	2450	Open in IMG/M
3300005468\|Ga0070707_100111366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2655	Open in IMG/M
3300005468\|Ga0070707_100953527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	823	Open in IMG/M
3300005471\|Ga0070698_101106890	Not Available	741	Open in IMG/M
3300005536\|Ga0070697_100168903	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300005552\|Ga0066701_10405905	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300005554\|Ga0066661_10242519	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300005554\|Ga0066661_10391432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	851	Open in IMG/M
3300005559\|Ga0066700_10039137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2842	Open in IMG/M
3300005559\|Ga0066700_11033908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300005568\|Ga0066703_10908144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300006034\|Ga0066656_10670101	Not Available	668	Open in IMG/M
3300006175\|Ga0070712_100663840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	887	Open in IMG/M
3300006797\|Ga0066659_11502334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300006800\|Ga0066660_10126249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1858	Open in IMG/M
3300009012\|Ga0066710_100124768	All Organisms → cellular organisms → Bacteria	3519	Open in IMG/M
3300009012\|Ga0066710_100268533	All Organisms → cellular organisms → Bacteria	2479	Open in IMG/M
3300009012\|Ga0066710_100954846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1321	Open in IMG/M
3300009012\|Ga0066710_102305484	Not Available	783	Open in IMG/M
3300009038\|Ga0099829_10313303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1288	Open in IMG/M
3300009038\|Ga0099829_10753644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	809	Open in IMG/M
3300009090\|Ga0099827_10456242	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300009137\|Ga0066709_101101251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1167	Open in IMG/M
3300009137\|Ga0066709_104386848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300011107\|Ga0151490_1413212	Not Available	568	Open in IMG/M
3300011991\|Ga0120153_1004098	All Organisms → cellular organisms → Bacteria	4940	Open in IMG/M
3300012005\|Ga0120161_1098079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → unclassified Desulfosporosinus → Desulfosporosinus sp.	704	Open in IMG/M
3300012011\|Ga0120152_1056030	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300012014\|Ga0120159_1022008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2335	Open in IMG/M
3300012096\|Ga0137389_10395839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1179	Open in IMG/M
3300012199\|Ga0137383_10246343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1310	Open in IMG/M
3300012201\|Ga0137365_10019196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5325	Open in IMG/M
3300012204\|Ga0137374_10701264	Not Available	760	Open in IMG/M
3300012206\|Ga0137380_10565429	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300012206\|Ga0137380_10782201	Not Available	825	Open in IMG/M
3300012206\|Ga0137380_11438187	All Organisms → cellular organisms → Bacteria → Terrabacteria group	574	Open in IMG/M
3300012207\|Ga0137381_10234177	Not Available	1594	Open in IMG/M
3300012208\|Ga0137376_10393335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1204	Open in IMG/M
3300012209\|Ga0137379_10055846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3798	Open in IMG/M
3300012209\|Ga0137379_10985681	Not Available	748	Open in IMG/M
3300012210\|Ga0137378_10053296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3644	Open in IMG/M
3300012349\|Ga0137387_10392795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300012350\|Ga0137372_11025385	Not Available	573	Open in IMG/M
3300012351\|Ga0137386_11021746	Not Available	587	Open in IMG/M
3300012354\|Ga0137366_10231246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1374	Open in IMG/M
3300012355\|Ga0137369_11082326	Not Available	525	Open in IMG/M
3300012356\|Ga0137371_10671655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	793	Open in IMG/M
3300012356\|Ga0137371_11393701	Not Available	514	Open in IMG/M
3300012358\|Ga0137368_10480844	Not Available	803	Open in IMG/M
3300012359\|Ga0137385_10189352	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300012359\|Ga0137385_10320678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1330	Open in IMG/M
3300012361\|Ga0137360_11858558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300012362\|Ga0137361_10238613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1654	Open in IMG/M
3300012532\|Ga0137373_10053749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3727	Open in IMG/M
3300013294\|Ga0120150_1034052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300013294\|Ga0120150_1042983	Not Available	880	Open in IMG/M
3300013765\|Ga0120172_1014838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2385	Open in IMG/M
3300014052\|Ga0120109_1004261	Not Available	3231	Open in IMG/M
3300014058\|Ga0120149_1018400	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300018027\|Ga0184605_10263076	Not Available	783	Open in IMG/M
3300018027\|Ga0184605_10402425	Not Available	611	Open in IMG/M
3300018061\|Ga0184619_10431994	Not Available	590	Open in IMG/M
3300018071\|Ga0184618_10440946	Not Available	549	Open in IMG/M
3300018431\|Ga0066655_10102988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1604	Open in IMG/M
3300018433\|Ga0066667_10813478	Not Available	796	Open in IMG/M
3300018433\|Ga0066667_10853498	Not Available	779	Open in IMG/M
3300018468\|Ga0066662_10301412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1346	Open in IMG/M
3300018468\|Ga0066662_10405769	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300018468\|Ga0066662_10551798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1065	Open in IMG/M
3300018482\|Ga0066669_10789942	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300019883\|Ga0193725_1029645	Not Available	1464	Open in IMG/M
3300021073\|Ga0210378_10006720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5144	Open in IMG/M
3300025910\|Ga0207684_10402614	Not Available	1176	Open in IMG/M
3300025922\|Ga0207646_10006819	All Organisms → cellular organisms → Bacteria	11745	Open in IMG/M
3300025922\|Ga0207646_10024604	All Organisms → cellular organisms → Bacteria	5515	Open in IMG/M
3300026295\|Ga0209234_1052437	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300026297\|Ga0209237_1115300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1144	Open in IMG/M
3300026325\|Ga0209152_10385849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300026328\|Ga0209802_1064606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1750	Open in IMG/M
3300026328\|Ga0209802_1186223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300026524\|Ga0209690_1253409	Not Available	553	Open in IMG/M
3300026552\|Ga0209577_10595808	Not Available	667	Open in IMG/M
3300027846\|Ga0209180_10224044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300027882\|Ga0209590_10671556	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300028718\|Ga0307307_10255201	Not Available	561	Open in IMG/M
3300028787\|Ga0307323_10268950	Not Available	614	Open in IMG/M
3300028878\|Ga0307278_10001027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13831	Open in IMG/M
3300028878\|Ga0307278_10410778	Not Available	594	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.19%
Aquatic	Environmental → Aquatic	4.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.19%
Sediment	Environmental → Aquatic → Sediment	3.85%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.58%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	39.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.58%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	28.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	14.42%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	10.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental	Open in IMG/M
3300012005	Permafrost microbial communities from Nunavut, Canada - A15_80cm_0M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL16A1W_100189222	3300000887	Permafrost	MQDDLVGRATDVVATVGDQATAFVILGSIVIPLAILTAVCWFF
AL16A1W_101608301	3300000887	Permafrost	MQDDLVGRAADVLAAAGDQGTAFVIFGSIVIPLAILTAVCWFF
JGI10216J12902_1016059112	3300000956	Soil	MQDDLVGRAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD*
JGI10216J12902_1143358051	3300000956	Soil	MQDHLMGRAATEMVSAAGDQATAFVILGSIVIPLAILAAVCWFFWTHRHDD*
Ga0066815_100955511	3300005164	Soil	MQDDLVGRAADVVAAAGDQGTAFVILGSILIPLAILAAVCWFFWKHRQDD*
Ga0066683_102574662	3300005172	Soil	RRSVLDCALPPARAAMQDDLIGRVAIGVVAAAGDQATALVVVASIVVPLAILTAVCWFFWKHRQDD*
Ga0066680_100592485	3300005174	Soil	MQDHLMGRVATDLVSAAGGQATALVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0066680_100684043	3300005174	Soil	MQDHLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTAVCWFFWKRRHDD*
Ga0066685_104510182	3300005180	Soil	MQDHLMGRAATDVVSAAGDQATALVILGSIVIPLAILTAVCWFFWKHRHEE*
Ga0066678_106118662	3300005181	Soil	VGRAADVVAAAVDQATAFVILGSIVIPLAILVAVCWFFWKHRHDD*
Ga0066678_107451341	3300005181	Soil	DHLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTAVCWFFWKRRHDD*
Ga0066678_108729462	3300005181	Soil	MGAATNVVSAAGDHATALVILGSIVIPLALLAAVCWFFWKHRHDD*
Ga0066675_103137031	3300005187	Soil	MQVNLMGRAATDVVSAAGDQATAFVIIGSIVIPLAILTTLCWFFWKHRHDD*
Ga0070708_1000205513	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VGQAADVVAAAVDQATAFVILGSIVIPLAILVAVCWFFWKHRHDD*
Ga0066686_104359361	3300005446	Soil	MQDDLVGRPADVVAAVVDQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0066681_103802372	3300005451	Soil	VGRAADVVAAVDQATAFVILGSIVIPLAILVAVCWFFWKHRHDD*
Ga0070706_1001200925	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AADVVAAAVDQATAYVILGSIVIPLAILVAVCWFFWKHRHDD*
Ga0070707_1001113661	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQDGLVVQAALDIVAASGDRATAFVILGSIVVPLAILTAVCWFFWKHRHDD*
Ga0070707_1009535272	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQDGLVGRAAYVVAAAGDRATAFVIFGSIVIPLAILTAVCWFFWKHRHDD*
Ga0070698_1011068901	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MQDGLVVRAAYVVAAAGDRATALVIFGSIVIPLAILTAVCWFFWKHRHDD*
Ga0070697_1001689033	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VGRGADVVAAAVDQATAYVILGSIVIPLAILVAVCWFFWKHRHDD*
Ga0066701_104059052	3300005552	Soil	MQDHLMGRVATDLVSAAGGQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0066661_102425192	3300005554	Soil	VGRAADVVAAAVDQATAFVILGSIVIPLAILMAVCWFFWKHRHDD*
Ga0066661_103914322	3300005554	Soil	MGRAATDLVSTAGAQATALVILGSIVIPLAVLTAVCWFFWKHRHDD*
Ga0066700_100391371	3300005559	Soil	MQDHLMGRAATDVVSAAGGQATAFVILGSIVIALASLTAVCWFFWKHRHDD*
Ga0066700_110339082	3300005559	Soil	MQGHLMGRAATDVVAAAGDQATAFVILGSIVIPLAILTAVCWFFWKHRHDD
Ga0066703_109081442	3300005568	Soil	VGRAADVVAAAVDQATAFVILGSIVIPLAILMAVCWFFWKHRHDE*
Ga0066656_106701012	3300006034	Soil	MQDHLMGRAATDVVSAAGDQATALVILGSIVIPLAILTAVC
Ga0070712_1006638402	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VGRAADVVAAAVDQATAFVILGSIVIPLVILVAVCWFFWKHRHDD*
Ga0066659_115023341	3300006797	Soil	MQDHLMGRAATDVVSAAGDQATAFVILGSIVIPLAI
Ga0066660_101262493	3300006800	Soil	MAATDLVSAAGAQATAFVILGSIVIPLAVLTAVCWFFWKHRHDD*
Ga0066710_1001247682	3300009012	Grasslands Soil	MQVNLMGRAATDVVSAAGDQATAFVIIGSIVIPLAILTTLCWFFWKHRHDD
Ga0066710_1002685331	3300009012	Grasslands Soil	MQDDLVGRPADVVAAVVDQATAFVILGSIVIPLAILTALCWFFWKHRHDD
Ga0066710_1009548464	3300009012	Grasslands Soil	MQDHLMGRAATDVVSAAGDQATALVILGSIVIPLAILTAVCWFFWKHRHEE
Ga0066710_1023054841	3300009012	Grasslands Soil	QDDLVGRAGLDAVAAAGDQATAFVILVSIVIPLAILTAVCWFFWKHRHDD
Ga0099829_103133032	3300009038	Vadose Zone Soil	VGRAADVVAAGVDRATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0099829_107536442	3300009038	Vadose Zone Soil	MQDGLVGRAAYVVAAAGDRATAFVIFGSIVIPLAIL
Ga0099827_104562422	3300009090	Vadose Zone Soil	MQDHLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTAVCWFFWRHRHDD*
Ga0066709_1011012512	3300009137	Grasslands Soil	MQDDLVGRPADVVAAVVDQATAFVILGSIVIPLAILTALCWFFWKHRHDD*
Ga0066709_1043868482	3300009137	Grasslands Soil	VGRAADVVAAVDQATAFVILGSIVIPLAILVAVCWFFW
Ga0151490_14132122	3300011107	Soil	MQDDLVGRATDVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD*
Ga0120153_10040984	3300011991	Permafrost	MQDDLVGRATDVVATVGDQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0120161_10980792	3300012005	Permafrost	MQDDLVGRATDVVATVGDQATAFVILGSIVIPLAILTAVCWFFWKNRHDD*
Ga0120152_10560301	3300012011	Permafrost	MQDDLVGRAADVLAAAGDQGTAFVIFGSIVIPLAILTAVCWFFWKHRHDD*
Ga0120159_10220084	3300012014	Permafrost	MQDDLVGRAADVVAAAGDQATAFVIFGSIVIPPAILTAVCWFFWKHRHDD*
Ga0137389_103958391	3300012096	Vadose Zone Soil	VGRAADVVAAAVDQATAFVILGSIVIPLAILVAVCWFFWKH
Ga0137383_102463431	3300012199	Vadose Zone Soil	MQDGLVGRAAYVVAAAGDRATAFVIFGSIVIPLAI
Ga0137365_100191964	3300012201	Vadose Zone Soil	VGRAADVVAAAVDQATAFVILGSIVIPVLILTAVCWFFWKHRHDD*
Ga0137374_107012641	3300012204	Vadose Zone Soil	NAAMQDHLMGGAATDMVFAAGDQATAFVILGSIVVPLAILTAVCWFFWKHRHND*
Ga0137380_105654292	3300012206	Vadose Zone Soil	MLVKRRRNAAMQDHLMGRVATDVVSAAGAQATAFVILGSIVIPLAILTAVCWFFWRHRHDD*
Ga0137380_107822013	3300012206	Vadose Zone Soil	MQDDLVGRVADVVAAAGDQATAFVIVGSIVIPLAILTAVCWFFWK
Ga0137380_114381872	3300012206	Vadose Zone Soil	MRRGVSADAASAADQATAFVILGSIVIPLAILTAVCWFFWN
Ga0137381_102341772	3300012207	Vadose Zone Soil	MQDDLVGRAADVVAAAGDQGTAFVILGSIVIPLAILTAVCWFFWKHRRDD*
Ga0137376_103933352	3300012208	Vadose Zone Soil	MQDHLMERAAMNVVFAAGDHATALVILGSIVIPLAILTAVCWFFWMHRHDD*
Ga0137379_100558462	3300012209	Vadose Zone Soil	MQDGLVGRAAYVVAAAGDRATAFVIFGSIVIPLAILTVWGA*
Ga0137379_109856812	3300012209	Vadose Zone Soil	MQDHLVGRTADVVAAAGDQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0137378_100532964	3300012210	Vadose Zone Soil	MQDHLVGRTADVVAAAGDQATAFVILGSIVIPFAILTAVCWFFWKHRHDD*
Ga0137387_103927951	3300012349	Vadose Zone Soil	MQDHLVGRTADVVAAAGDQATAFVILGSIVIPLAILTAVCWVVWKHRHDD*
Ga0137372_110253852	3300012350	Vadose Zone Soil	MQDHLMGRVATDVVSAAGAQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0137386_110217461	3300012351	Vadose Zone Soil	MQDDLVGRAADVVAAAGDQGTAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0137366_102312462	3300012354	Vadose Zone Soil	MQDHLMGRGATDVVFAAGDQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0137369_110823261	3300012355	Vadose Zone Soil	VATDVVSAAGAQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0137371_106716551	3300012356	Vadose Zone Soil	RNAAMQDHLMGRAATDVVSAAGDQRTAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0137371_113937011	3300012356	Vadose Zone Soil	ARECSLNPERSAAMQVNLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTTLCWFFWKHRHDD*
Ga0137368_104808441	3300012358	Vadose Zone Soil	LVWRAADVVAAAGDQATAFVIVGSIVIPLAILAAVCWFFWTHRHDD*
Ga0137385_101893525	3300012359	Vadose Zone Soil	DARSPDGRAATDVVSAAGDQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0137385_103206783	3300012359	Vadose Zone Soil	MQDGLVGRAAYVVAAAGDRATAFVIFGSIVIPLAILTV
Ga0137360_118585582	3300012361	Vadose Zone Soil	VGRAADVVAAAVDQATAFVILGSIVIPVAILTAVCWFFWKHRHDD*
Ga0137361_102386133	3300012362	Vadose Zone Soil	VGRAAEVVAAAVDQATAFVILGSIVIPLAILMAVCWFFWKHRHDD*
Ga0137373_100537491	3300012532	Vadose Zone Soil	MLVKRRRNAAMQDHLMGPVATDVVSAAGAQATAFVILGSIVIPLAILTAVCWFFWKHRHDD*
Ga0120150_10340521	3300013294	Permafrost	RRRNAAMQDDLVGRAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD*
Ga0120150_10429831	3300013294	Permafrost	MQDDLVGRAADVLAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD*
Ga0120172_10148384	3300013765	Permafrost	MQDDLVGRATDVVATVGDQATAFVILGSIVIPLAILTAVCW
Ga0120109_10042612	3300014052	Permafrost	MQDELVGRDADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD*
Ga0120149_10184001	3300014058	Permafrost	MQDDLVGRAADVLAAAGDQGTAFVIFGSIVIPLAILTAVCWFFWK
Ga0184605_102630761	3300018027	Groundwater Sediment	MQDDLVGRAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD
Ga0184605_104024251	3300018027	Groundwater Sediment	RAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDD
Ga0184619_104319942	3300018061	Groundwater Sediment	MQDDLVGRAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFCWKHRHDD
Ga0184618_104409462	3300018071	Groundwater Sediment	MQDDLVGRAADVVAAAGDQAMVFVIFGSIVIPLAILTAVRWFFWKHRHDD
Ga0066655_101029882	3300018431	Grasslands Soil	MLAKRERNAAMQDHLMGRAATDVVSAAGDQATALVILGSIVIPLAILTAVCWFFWKHRHE
Ga0066667_108134782	3300018433	Grasslands Soil	ECSLNPERSAAMQVNLMGRAATDVVSAAGDQATAFVIIGSIVIPLAILTTLCWFFWKHRHDD
Ga0066667_108534982	3300018433	Grasslands Soil	MQVNLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTTVCWFFWKHRHDD
Ga0066662_103014121	3300018468	Grasslands Soil	QDHLMGRAATDLVSTAGSQATALVILGSIVIPLAVLTAVCWFFWKHRHDD
Ga0066662_104057693	3300018468	Grasslands Soil	MQDHLMGRVATDLVSAAGGQATAFVILGSIVIPLAILTAVCWFFWKHRHDD
Ga0066662_105517981	3300018468	Grasslands Soil	MQDHLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTAVCWFFWNRRHDD
Ga0066669_107899422	3300018482	Grasslands Soil	VGRAADVVAAVDQATAFVILGSIVIPLAILVAVCWFFWKHRHDD
Ga0193725_10296452	3300019883	Soil	MQDDLVGRAADVVAAAGDQATAFVILGSILIPLAILAAVCWFFWKHRQDD
Ga0210378_100067202	3300021073	Groundwater Sediment	MTSWGRAADVVAAAGDQATAFVIVGSIVIPLAILTAVCWFFWKHRHDD
Ga0207684_104026141	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ARSDAAMQDGLVGRAAYVVAAAGDRATALVIFGSIVIPLAILTAVCWFFWKHRHDD
Ga0207646_1000681912	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MQDGLVVQAALDIVAASGDRATAFVILGSIVVPLAILTAVCWFFWKHRHDD
Ga0207646_100246046	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VGQAADVVAAAVDQATAFVILGSIVIPLAILVAVCWFFWKHRHDD
Ga0209234_10524373	3300026295	Grasslands Soil	NLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTTLCWFFWKHRHDD
Ga0209237_11153002	3300026297	Grasslands Soil	MQDDLVGRPADVVAAVVDQATAFVILGSIVIPLAILTAVCWFFWKHRHDD
Ga0209152_103858491	3300026325	Soil	MQDHLMGRAATDVVSAAGGQATAFVILGSIVIALASLTAVC
Ga0209802_10646061	3300026328	Soil	MQDHLMGRVATDLVSAAGGQATALVILGSIVIPLAILTAVCWFFWKHRHDD
Ga0209802_11862231	3300026328	Soil	MQDHLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTAVCWFFWKRRHDD
Ga0209690_12534092	3300026524	Soil	MQDDLVGRAADVVAEAGDQATAFVIFGSIAIPFAILTA
Ga0209577_105958082	3300026552	Soil	MAATDLVSAAGAQATAFVILGSIVIPLAVLTAVCWFFWKHRHDD
Ga0209180_102240442	3300027846	Vadose Zone Soil	VGRAADVVAAGVDRATAFVILGSIVIPLAILTAVCWFFWKHRHDD
Ga0209590_106715561	3300027882	Vadose Zone Soil	MQDHLMGRAATDVVSAAGDQATAFVILGSIVIPLAILTAVCWFFWRHRHDD
Ga0307307_102552011	3300028718	Soil	MQDDLVGRAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFFWKHRHDE
Ga0307323_102689502	3300028787	Soil	MQDDLVGRAADVVAAAGDQATAFVIFGSIVIPLAILTAVCWFF
Ga0307278_1000102721	3300028878	Soil	MQDDLVGRAADVVAAAGDRATAFVIVGSIVIPLAILTAVCWFFWKHRHDD
Ga0307278_104107782	3300028878	Soil	MQDDLMGRAADVVAAAGDQATAFVIVGSIVIPLAVLTAVCWFFWKHRHDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097796

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences