Basic Information | |
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Family ID | F097786 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 44 residues |
Representative Sequence | NPPYGADEYLREAYGAIHQGIAAAGAGYVEVARLTPERMAQ |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 2.94 % |
% of genes near scaffold ends (potentially truncated) | 93.27 % |
% of genes from short scaffolds (< 2000 bps) | 90.38 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (68.269 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.423 % of family members) |
Environment Ontology (ENVO) | Unclassified (22.115 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.038 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 28.99% β-sheet: 0.00% Coil/Unstructured: 71.01% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Peatland Iron-Sulfur Acid Spring Watersheds Soil Soil Vadose Zone Soil Glacier Forefield Soil Surface Soil Peatlands Soil Arctic Peat Soil Soil Forest Soil Hardwood Forest Soil Untreated Peat Soil Tropical Peatland Bog Forest Soil Bog Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Fen Palsa Bog Plant Litter Weathered Mine Tailings Rhizosphere Host-Associated Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12269J14319_102822171 | 3300001356 | Peatlands Soil | GSGLMIVNPPFGADEYLATAYAAIHRGIAAPGAGYVEVARLTPEKL* |
JGI20180J14839_10137911 | 3300001413 | Arctic Peat Soil | PDDAGLGLAGSGLMIVNPPYGADEFLTAAYGAIHRGIAAAGAGYVEVARLTPEKL* |
JGIcombinedJ26739_1003467971 | 3300002245 | Forest Soil | LVNPPYGADDFLREAYLAIHASLAEAGRGYVEVARLTAERMAQ* |
Ga0062385_108747391 | 3300004080 | Bog Forest Soil | AGVGLAGSGLMIVNPPFGADEYLREAYEAIQRGIAAPNSGYVEVARLTPERMAQ* |
Ga0062386_1012420713 | 3300004152 | Bog Forest Soil | PPYGADEYLQRSYGAIHAGLTDSSSGYVEVTRLTGERVAQ* |
Ga0062388_1021836171 | 3300004635 | Bog Forest Soil | AGSGLMIVNPPYGADEYLRRAYAAIHEGIALPGAGYVEVARLTPERMAL* |
Ga0066819_10076071 | 3300005148 | Soil | AGSGLMIVNPPYGADDYLNDAYAAIHKGIAAPGSGYVEIARLTPERMAQ* |
Ga0066823_101232592 | 3300005163 | Soil | SGLMIVNPPYGADDYLNDAYAAIHKGIAAPGSGYVEIARLTPERMAQ* |
Ga0070761_109241351 | 3300005591 | Soil | NPPHGADEYLTGAYAAIHQGIATSGSGYVEVARLTPERMAQ* |
Ga0070764_105190493 | 3300005712 | Soil | DNYLSDAYAAIHKVIASSGSGYVEVTRLTPERMAQ* |
Ga0075028_1002302781 | 3300006050 | Watersheds | PDDAGVGLAGSGLMIVNPPFGTDEYLTRAYATIREGIATPKAGYVEVGRLTPERMAQ* |
Ga0075028_1006789871 | 3300006050 | Watersheds | VVNPPYGADDFLMQAYGVIHGAVAAAGAGYVEVARLTPELMAK* |
Ga0075028_1008798661 | 3300006050 | Watersheds | GVGLAGSGLMIVNPPYGADDYLNDAYAAIHKGIAAPGSGYVEIARLTPERMAQ* |
Ga0075029_1004727553 | 3300006052 | Watersheds | IVNPPYGADDHLREAYTAVHRAIAAAGAGYVEVDRLTPERMAQ* |
Ga0075029_1006029463 | 3300006052 | Watersheds | VGLAGSGLMIANPPYGADEFLGEAYARLHELIGTPAMGYVEVARLTPERVAS* |
Ga0075029_1007804371 | 3300006052 | Watersheds | GLLIVNPPYGADDHLLEAYSAIHSAVAAAGSGYVEVARLTPERVAQ* |
Ga0075019_103275151 | 3300006086 | Watersheds | LIVNPPYGADDHLREAYTAVHRAIAAAGAGYVEVDRLTPERMAQ* |
Ga0070712_1011033543 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | AGVGLAGSGLMIVNPPYGADDYLNDAYAAIHKGIAAPGSGYVEIARLTPERMAQ* |
Ga0116105_10632931 | 3300009624 | Peatland | YGADEHLTAAYAAIHRGVAPATDAGYVEVARLTPEQL* |
Ga0116135_13831503 | 3300009665 | Peatland | GVGLAGSGLIIVNPPYGADEFLASAYSAVHRILAPSGSGYVEVARLTPERMAQ* |
Ga0116228_109197171 | 3300009701 | Host-Associated | NPPYGADTYLQQAYSAIHGAIADPGAGYVEVTRLTPERIAR* |
Ga0074044_108908901 | 3300010343 | Bog Forest Soil | GSGLIIVNPPYGADDYLAGAYAAIHQGIATPGAGYVEVARLTAERAGH* |
Ga0126356_101267161 | 3300010877 | Boreal Forest Soil | AGSGLLIVNPPYGADQFLRDAYGAIHQAIATAGAGYVEVARLTPERMAQ* |
Ga0137393_117877382 | 3300011271 | Vadose Zone Soil | AGSGLMVVNPPYGADDFLNQAYEVIHGAVAAAGAGYVEVARLTPELMAK* |
Ga0137360_118317881 | 3300012361 | Vadose Zone Soil | AGVGLAGSGLMIVNPPHGTDEYLRDAYAAIHSGIAVPGAGYVEVGRLTPERMAQ* |
Ga0137416_122670301 | 3300012927 | Vadose Zone Soil | IVNPPFGTDAYLRAAYAAIHAGIAASGAGYVAVTRLTPERMAQ* |
Ga0168317_10704881 | 3300012982 | Weathered Mine Tailings | VNPPYGADDYLAAAYAAIHRILAPSGAGYVEVARLTPERMAQ* |
Ga0181536_103693123 | 3300014638 | Bog | PPYGADEYLQNAYTTVHQGIAAPGSGYVEVARLTRERMAQ* |
Ga0181525_107143493 | 3300014654 | Bog | DYLSGAYAAVHQGIAARGAGYVEVGRLTPERMAQ* |
Ga0182030_106300771 | 3300014838 | Bog | DAGVGLAGSGLAIVNPPHGTDEYLSDAYAAIHRGIAPTGAGYVEVARLTPERMAQ* |
Ga0137405_14084302 | 3300015053 | Vadose Zone Soil | VIVNPPYGADQFLRDAYTAIHRVIAAAGAGYVEVARLTPERVAQ* |
Ga0167652_10895741 | 3300015164 | Glacier Forefield Soil | PYGTDSYLREAYAAVHDAVASAGAGYVEVARLTPERMSQ* |
Ga0167631_10221661 | 3300015168 | Glacier Forefield Soil | GSGLMIVNPPYGADQFLRDAYAAIHQGIGAPGAGYVEVGRLTPERMAH* |
Ga0167668_10311903 | 3300015193 | Glacier Forefield Soil | LLIVNPPYGADDYLRNAYAMIHRGIAAPGAGYVEVGRLTAERMAQ* |
Ga0167668_10725503 | 3300015193 | Glacier Forefield Soil | DDFLQQAYGSIHSAVAAAGAGYVEVARLTPELVAK* |
Ga0167650_11146783 | 3300015203 | Glacier Forefield Soil | PPYGADDHLRDAYTAIHRGIATPGAGYVEVGRLTPERMAQ* |
Ga0187847_102222613 | 3300017948 | Peatland | LAGSGLMIVNPPFGADEYLASAYAAIHRGIAAADAGYVEVARLTPEKL |
Ga0187782_110736891 | 3300017975 | Tropical Peatland | VNPPFGADEFLASAYAAVHEALAMAGAGYVEVARLTPEQMA |
Ga0187859_104676223 | 3300018047 | Peatland | NPPFGTDADLKSAYGVIHGALAPAAGAGYVEVARLTPERMAQ |
Ga0193728_10840771 | 3300019890 | Soil | GSGLMIVNPPYGTDEYLREAYAAIHSGIAASGAGYVEVARLTPERMAQ |
Ga0210407_111599981 | 3300020579 | Soil | PYGTDEYLQRAYGAIHGALGDSGVGYVEVARLTAERVAQ |
Ga0210403_101205115 | 3300020580 | Soil | NPPYGADEYLREAYGAIHQGIAAAGAGYVEVARLTPERMAQ |
Ga0210395_108972451 | 3300020582 | Soil | DEFFRDAYGAIHQAIAAAGAGYVEVARLTPERLAQ |
Ga0210406_100804561 | 3300021168 | Soil | ADQFLRDAYGAIHQAIAPAGAGYVEVARLTPERMAQ |
Ga0210396_112914681 | 3300021180 | Soil | GLAGSGLMIVNPPYGTDEYLTDAYAAIHQGIAAPGAGYVEVARLTAERVAH |
Ga0210388_103441934 | 3300021181 | Soil | VNPPYGADEFLSAAYSAVHRTLAPAGSGYVEVERLTPERMAQ |
Ga0210393_114206991 | 3300021401 | Soil | LMVVNPPYGADDFLKQAYEAIHGRVAAAGAGYVEVARLTPELMAQ |
Ga0210387_100347491 | 3300021405 | Soil | IVNPPYGADDFFRDAYGAIHQAIAAAGAGYVEVARLTPERLAQ |
Ga0210387_109807601 | 3300021405 | Soil | VNPPYGADQFLRDAYGVIHQAIAAPGAGYVEVDRLTPERMAQ |
Ga0210394_103428324 | 3300021420 | Soil | PPYGADEFLSGAYAAIHRGIATPGAGYVEVARLTPERMAQ |
Ga0210394_108830523 | 3300021420 | Soil | LAGSGLMIVNPPYGADEYLRRAYTAIHKGIASPGAGYVEVARLTPERMAL |
Ga0210394_116076021 | 3300021420 | Soil | GSGLMIVNPPYGTDDYLRDAYTAIHSGIAAPGAGYVEVARLTPERMAQ |
Ga0210390_103245331 | 3300021474 | Soil | LIVNPPYGADEYLRRAYTAIHEGIAVPGAGYVEVARLTPERMAL |
Ga0210398_113207391 | 3300021477 | Soil | GADQHLADAYSAIHGGIATPGAGYVEVGRLTPERVAQ |
Ga0212123_104510283 | 3300022557 | Iron-Sulfur Acid Spring | DEYLRAAYTAIHAGIAASGAGYVEVARLTPERMAQ |
Ga0242657_10865391 | 3300022722 | Soil | VNPPYGADEYLRAAYGAIHQGIAAAGAGYVEVARLTPEGMAQ |
Ga0224557_11990841 | 3300023101 | Soil | GADDYLQEAYAAIHGAIATAGSGYVEVARLTPERMAQ |
Ga0208935_10382052 | 3300025414 | Peatland | YGADEHLTAAYAAIHRGVAPATDAGYVEVARLTPEQL |
Ga0208691_10646263 | 3300025612 | Peatland | GADEFLASAYSAVHRILAPSGSGYVEVARLTPERMAQ |
Ga0208589_10286791 | 3300025634 | Arctic Peat Soil | AGSGLLIVNPPYGADEYLSEAYTAIHRGIAVPGAGYVEVVRLTPERVAQ |
Ga0209421_10285363 | 3300027432 | Forest Soil | GLMIVNPPYGADGFLRDAYGAIHQGIAAPGAGYVEVARLTPERMAQ |
Ga0209167_106918281 | 3300027867 | Surface Soil | AGSGLLIVNPPYGADEYLRRAYTAIHEGIALPGAGYVDVTRLTPERMAQ |
Ga0209275_105931423 | 3300027884 | Soil | YGTDEYLTDAYAAIHQGIAAPGAGYVEVARLTAERVAH |
Ga0209380_100530681 | 3300027889 | Soil | PYGADDFLRQAYQAIHASLAEAGRGYVEVARLTAERMAQ |
Ga0265355_10013491 | 3300028036 | Rhizosphere | MIVNPPYGADQFLRDAYSAIHQAIAAPGAGYVEVARLTPERMAH |
Ga0302220_102705521 | 3300028742 | Palsa | ASVGLAGSGLLLVNPPYGADDFLREAYLAIHASLAEAGRGYVEVARLTPERMAQ |
Ga0302225_101873623 | 3300028780 | Palsa | LMVINPPFGADEYLRAAYTAIHAGLAAAGSGYVEVDRLTPERIN |
Ga0302228_102905933 | 3300028808 | Palsa | AGSGLLLVNPPYGADDFLREAYAAIHDSLAEAGRGYVEVARLTPERMAQ |
Ga0302229_100576741 | 3300028879 | Palsa | SVGLAGSGLLLVNPPYGADDFLREAYLAIHASLAEAGRGYVEVARLTPERMAQ |
Ga0308309_101285271 | 3300028906 | Soil | GLMIVNPPYGADQYLRDAYGAIHHAIAVPGAGYVEVVRLTPERLAQ |
Ga0311361_109927321 | 3300029911 | Bog | MLINPPFGADEYLRAAYTAIHAGIAAAGSGYVEVNRLTPERIG |
Ga0311362_101857811 | 3300029913 | Bog | GLVMVNPPHGTDEFLAAAYSAIHRTLAAPDAGYVEVARLTAERMAQ |
Ga0311352_101956421 | 3300029944 | Palsa | GVGLAGSGLMIVNPPYGTDEYLTDAYAAIHQGIAAPGAGYVEVARLTAERVAH |
Ga0311330_107021381 | 3300029945 | Bog | GADEALADAYTAIHSALAAPGAGYVEVARLTSERMAQ |
Ga0311371_116124473 | 3300029951 | Palsa | PPFGADADLKIAYGVIHGALAPAGAGYVEVARLTPERMAQ |
Ga0311336_103032074 | 3300029990 | Fen | DAFLKQAYEVIHGAVAASGAGYVEVARLTVELMAK |
Ga0302302_12887912 | 3300029997 | Palsa | VGLAGSGLMVINPPFGADEYLRAAYTAIHAGLAAAGSGYVEVDRLTPERIN |
Ga0302270_100783235 | 3300030011 | Bog | SGLMIVNPPYGTDEHLRRAYEAIHRAIAATGAGYVEVARLTPERMAQ |
Ga0302195_104981752 | 3300030051 | Bog | LAGSGLMIVNPPYGTDEHLRRAYEAIHRAIAATGAGYVEVARLTPERMAQ |
Ga0302192_100949544 | 3300030507 | Bog | PFGADDYLRQAYTAIHASVASAGHGYVEVTRLTPERMA |
Ga0302183_101554092 | 3300030509 | Palsa | MIVNPPYGADQYLRDAYGAIHHAIAVPGAGYVEVARLTPERMAQ |
Ga0311355_111872853 | 3300030580 | Palsa | GSGLMLVNPPFGADEYLLEAYTAIHAAVATADAGYVEVARLTPERMAH |
Ga0310038_104778351 | 3300030707 | Peatlands Soil | GLMIVNPPFGADEYLATAYAAIHRGIAAPGAGYVEVARLTPEKL |
Ga0265750_10510831 | 3300030813 | Soil | AGSGLMIVNPPYGADQFLRDAYGAIHEAIAAPGAGYVEVARLTPERMAQ |
Ga0302308_102914153 | 3300031027 | Palsa | SGLLLVNPPYGADDFLREAYLAIHASLAEAGRGYVEVARLTPERMAQ |
Ga0170834_1018454521 | 3300031057 | Forest Soil | MIVNPPYGADQFLRDAYGAIHRGIAAAGAGYVEVARLTPERLAQ |
Ga0170834_1035533732 | 3300031057 | Forest Soil | IVNPPYGADQFLRDAYGAIHRGIAAAGAGYVEVARLTPERMAH |
Ga0170823_150943371 | 3300031128 | Forest Soil | LAGSGLMIVNPPYGADQFLRDAYGAIHRGIAAAGAGYVEVARLTPERMAH |
Ga0302307_102991423 | 3300031233 | Palsa | MIVNPPYGTDEYLTDAYAAIHQGIAAPGAGYVEVARLTAERVAH |
Ga0302325_112733323 | 3300031234 | Palsa | ADEFLRQAYEAIHASVAEAGRGYVEVARLTGERMAQ |
Ga0265340_104222862 | 3300031247 | Rhizosphere | GVGLAGSGLMIVNPPYGADEFLNKAYAAIHKGLATPGAGYVEVARLTPERMAQ |
Ga0170818_1077236913 | 3300031474 | Forest Soil | DAGVGLAGSGLMIVNPPYGADDYLNDAYAAIHKGIAAPGSGYVEIARLTPERMAQ |
Ga0170818_1106117373 | 3300031474 | Forest Soil | VNPPYGADEYLSGAYAAIHKGIAAPGAGYVEVARLTPERMAQ |
Ga0307373_101003571 | 3300031672 | Soil | PFGIEEPLRAAYAAIHRHLAPAGAGYVEVARLTPERMAQ |
Ga0310686_1083512591 | 3300031708 | Soil | PPYGADEYLHGAYAAIHAGIAAAASGYVEVARLTPERMAQ |
Ga0310686_1160312493 | 3300031708 | Soil | FGADEYLRAAYTAIHEGLAAAGSGYVEVDRLTPERIS |
Ga0307474_103004791 | 3300031718 | Hardwood Forest Soil | ADQFLRDAYGAIHQAIAAPGAGYVEVDRLTPERMAH |
Ga0307474_115042851 | 3300031718 | Hardwood Forest Soil | GADRFLRDAYGAIHHGIAALGAGYVEVARLTPERMAQ |
Ga0307471_1015991483 | 3300032180 | Hardwood Forest Soil | YGADEYLRDAYAVIHRAIAAPGAGYVEVVRLTPERMAQ |
Ga0307471_1024265713 | 3300032180 | Hardwood Forest Soil | GVGLAGSGLMIVNPPYGADDYLTDAYAAIHKGIAAPGSGYVEIARLTPERMAQ |
Ga0348332_117187683 | 3300032515 | Plant Litter | VNPPYGADEYLSEAYAAIHRGIATPGAGYVEVVRLTPERVAQ |
Ga0334828_139019_14_172 | 3300033822 | Soil | VGLAGSGLMIVNPPYGTDEYLTEAYTAIHKGIAAPGAGYVEVARLTPERVAQ |
Ga0334790_111094_711_839 | 3300033887 | Soil | MIVNPPFGADEYLATAYAAIHRGIAAPGAGYVEVARLTPEKL |
Ga0370514_066857_786_908 | 3300034199 | Untreated Peat Soil | PPYGADAFLADAYGELHRGIAQPGAGYVQVARLTPERMPQ |
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