Metagenome / Metatranscriptome Family F097770

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097770
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	51 residues
Representative Sequence	AATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Number of Associated Samples	83
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.91 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	91.35 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.154 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.961 % of family members)
Environment Ontology (ENVO)	Unclassified (42.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.731 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.26% β-sheet: 0.00% Coil/Unstructured: 39.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00211	Guanylate_cyc	11.54
PF06823	DUF1236	5.77
PF13545	HTH_Crp_2	4.81
PF05239	PRC	3.85
PF04392	ABC_sub_bind	2.88
PF06707	DUF1194	2.88
PF09335	SNARE_assoc	1.92
PF13472	Lipase_GDSL_2	1.92
PF11752	DUF3309	1.92
PF13561	adh_short_C2	1.92
PF05433	Rick_17kDa_Anti	0.96
PF01068	DNA_ligase_A_M	0.96
PF03006	HlyIII	0.96
PF12697	Abhydrolase_6	0.96
PF13676	TIR_2	0.96
PF02738	MoCoBD_1	0.96
PF03979	Sigma70_r1_1	0.96
PF05957	DUF883	0.96
PF09650	PHA_gran_rgn	0.96
PF03631	Virul_fac_BrkB	0.96
PF00004	AAA	0.96
PF13551	HTH_29	0.96
PF01566	Nramp	0.96
PF13701	DDE_Tnp_1_4	0.96
PF05598	DUF772	0.96
PF07568	HisKA_2	0.96
PF00989	PAS	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	11.54
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.88
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	1.92
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	1.92
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	1.92
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.96
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.96
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.96
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.96
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.96
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.96
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.69 %
Unclassified	root	N/A	3.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	77.88 %
Unclassified	root	N/A	3.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	16.35 %
Unclassified	root	N/A	3.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.35 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.81 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.85 %
Unclassified	root	N/A	3.85 %
Kiloniellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae	1.92 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.35 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.85 %
Unclassified	root	N/A	3.85 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	2.88 %
Kiloniella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	1.92 %
Methylopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila	1.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.35 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.85 %
Unclassified	root	N/A	3.85 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	2.88 %
unclassified Methylopila	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila	1.92 %
Kiloniella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	1.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.35 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.85 %
Unclassified	root	N/A	3.85 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	2.88 %
Kiloniella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	1.92 %
Methylopila sp. M107	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. M107	0.96 %
Methylopila sp. 73B	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. 73B	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02JKUFR	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
2140918013\|NODE_12025_length_1178_cov_4.847198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1210	Open in IMG/M
2170459003\|FZN2CUW02GM6RA	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300000956\|JGI10216J12902_102951366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300004633\|Ga0066395_10800600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	565	Open in IMG/M
3300005174\|Ga0066680_10367223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	916	Open in IMG/M
3300005174\|Ga0066680_10502352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	763	Open in IMG/M
3300005179\|Ga0066684_10120179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1635	Open in IMG/M
3300005332\|Ga0066388_100860686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1490	Open in IMG/M
3300005332\|Ga0066388_101862138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1072	Open in IMG/M
3300005439\|Ga0070711_100157983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1716	Open in IMG/M
3300005518\|Ga0070699_101911449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. M107	543	Open in IMG/M
3300005540\|Ga0066697_10320895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300005713\|Ga0066905_100133756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1756	Open in IMG/M
3300005713\|Ga0066905_101239444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	668	Open in IMG/M
3300005764\|Ga0066903_100836534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1653	Open in IMG/M
3300005764\|Ga0066903_101743651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1187	Open in IMG/M
3300005764\|Ga0066903_103499490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	846	Open in IMG/M
3300005764\|Ga0066903_107999293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. 73B	542	Open in IMG/M
3300006028\|Ga0070717_10163154	All Organisms → cellular organisms → Bacteria → Proteobacteria	1934	Open in IMG/M
3300006175\|Ga0070712_101394045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300006797\|Ga0066659_11669591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	536	Open in IMG/M
3300006871\|Ga0075434_100511397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1221	Open in IMG/M
3300006969\|Ga0075419_11435560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300009012\|Ga0066710_100769633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1473	Open in IMG/M
3300010046\|Ga0126384_10447734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1102	Open in IMG/M
3300010046\|Ga0126384_11001205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300010046\|Ga0126384_11332043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300010323\|Ga0134086_10490522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300010360\|Ga0126372_11012797	Not Available	843	Open in IMG/M
3300010360\|Ga0126372_12840192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	536	Open in IMG/M
3300010361\|Ga0126378_11834965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300010361\|Ga0126378_12946490	Not Available	543	Open in IMG/M
3300010366\|Ga0126379_13663578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300010398\|Ga0126383_10176694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2024	Open in IMG/M
3300012180\|Ga0153974_1076454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300012205\|Ga0137362_10561816	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300012206\|Ga0137380_11118685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300012208\|Ga0137376_10697199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	876	Open in IMG/M
3300012357\|Ga0137384_10518588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	978	Open in IMG/M
3300012358\|Ga0137368_10133888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1855	Open in IMG/M
3300012923\|Ga0137359_10314288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1394	Open in IMG/M
3300012971\|Ga0126369_11173304	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300012984\|Ga0164309_11915095	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300015356\|Ga0134073_10390908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300015357\|Ga0134072_10040719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1256	Open in IMG/M
3300015372\|Ga0132256_100619569	All Organisms → cellular organisms → Bacteria → Proteobacteria	1197	Open in IMG/M
3300016294\|Ga0182041_11203999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300016357\|Ga0182032_10199139	All Organisms → cellular organisms → Bacteria → Proteobacteria	1523	Open in IMG/M
3300016371\|Ga0182034_11580202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300016371\|Ga0182034_11670118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300016387\|Ga0182040_10137489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1721	Open in IMG/M
3300016404\|Ga0182037_10255971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1388	Open in IMG/M
3300016445\|Ga0182038_11407111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300018433\|Ga0066667_10225390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1400	Open in IMG/M
3300018482\|Ga0066669_11824908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300021178\|Ga0210408_10114327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2125	Open in IMG/M
3300021560\|Ga0126371_10924808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1015	Open in IMG/M
3300025910\|Ga0207684_10042374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3858	Open in IMG/M
3300025910\|Ga0207684_11695124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300026327\|Ga0209266_1208529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300026532\|Ga0209160_1266674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300027874\|Ga0209465_10163022	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300027915\|Ga0209069_10949823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300030592\|Ga0247612_1127257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300031572\|Ga0318515_10085588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1639	Open in IMG/M
3300031573\|Ga0310915_10097641	All Organisms → cellular organisms → Bacteria	1979	Open in IMG/M
3300031573\|Ga0310915_10615156	Not Available	769	Open in IMG/M
3300031680\|Ga0318574_10073615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1850	Open in IMG/M
3300031719\|Ga0306917_10087240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2207	Open in IMG/M
3300031720\|Ga0307469_12018012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300031744\|Ga0306918_10575829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	882	Open in IMG/M
3300031747\|Ga0318502_10060785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2013	Open in IMG/M
3300031763\|Ga0318537_10064981	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300031763\|Ga0318537_10230934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300031764\|Ga0318535_10255393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	784	Open in IMG/M
3300031770\|Ga0318521_10094677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1634	Open in IMG/M
3300031770\|Ga0318521_10142268	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300031771\|Ga0318546_10974081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300031777\|Ga0318543_10298312	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300031793\|Ga0318548_10597098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300031797\|Ga0318550_10354010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	711	Open in IMG/M
3300031821\|Ga0318567_10240114	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300031833\|Ga0310917_10088705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1972	Open in IMG/M
3300031833\|Ga0310917_11118371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300031859\|Ga0318527_10408048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300031879\|Ga0306919_10033045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3282	Open in IMG/M
3300031910\|Ga0306923_10665702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1162	Open in IMG/M
3300031912\|Ga0306921_10354429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1715	Open in IMG/M
3300031912\|Ga0306921_11488896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300031941\|Ga0310912_11254615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300031945\|Ga0310913_10109372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1878	Open in IMG/M
3300032001\|Ga0306922_10357705	All Organisms → cellular organisms → Bacteria → Proteobacteria	1566	Open in IMG/M
3300032001\|Ga0306922_10901968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	918	Open in IMG/M
3300032001\|Ga0306922_12014684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300032052\|Ga0318506_10102064	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300032064\|Ga0318510_10129431	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300032076\|Ga0306924_10073345	All Organisms → cellular organisms → Bacteria → Proteobacteria	3823	Open in IMG/M
3300032090\|Ga0318518_10020769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2892	Open in IMG/M
3300032090\|Ga0318518_10388052	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300032180\|Ga0307471_103736464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300032261\|Ga0306920_102440109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300032261\|Ga0306920_103626829	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.15%
Host-Associated	Host-Associated	3.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.19%
Plants	Host-Associated → Plants	2.88%
Aquatic	Environmental → Aquatic	0.96%
Fungi	Host-Associated → Fungi	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%
Mycelium	Host-Associated → Fungi → Mycelium	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.81%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_04308830	2065487018	Soil	DTAAEAAEALRDAGSEAGDFLRTAIEERPYTTAAIALGIGFLIGRFGRRGDS
Iowa-Corn-GraphCirc_01400750	2140918013	Soil	ARDTAAEAAEALRDASSEAGDFLRTAIEERPYTTAAIALGIGFLIGRFGRRGDS
E4A_00459260	2170459003	Grass Soil	QDVYGQAKEAAATAADAIRETAGETDDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRIDY
JGI10216J12902_1029513663	3300000956	Soil	AADAIREGASEADDFLRAAIEERPYTAAAVALAIGYLIGRFGRRANY*
Ga0066395_108006002	3300004633	Tropical Forest Soil	DAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY*
Ga0066680_103672233	3300005174	Soil	AAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY*
Ga0066680_105023522	3300005174	Soil	YVQATETAADAAEVIRKSASGAEDFLRTTIEERPYTAAAVALGVGYLIGRFSRRENY*
Ga0066684_101201792	3300005179	Soil	ADAAEAIQERASEAGDFLRTTIEERPFTAAAIALAIGFLIGRFGHRSD*
Ga0066388_1008606861	3300005332	Tropical Forest Soil	DAVEAIRESATGAEDFLRTTIEQRPYTAAAVALGIGYLIGGRRNNYAKV*
Ga0066388_1018621384	3300005332	Tropical Forest Soil	YGQAKETAADAAEAIRERASEADDFLRATIEQRPYTAAAVALAIGYLIGRFGRRVGY*
Ga0070711_1001579831	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ASDAVEAIRESASGAEDFLRTTIEQRPYTAAAIALGIGYLIGRFGRRANY*
Ga0070699_1019114491	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VYGQAKETAANAADAIREGASEADDFLRAAIEERPYTAAAVALAIGYLIGRFGRRANY*
Ga0066697_103208951	3300005540	Soil	TAADAAEVMRKSASGAEDFLRTTIEERPYTVAAVALGIGYLIGRFSRRENY*
Ga0066905_1001337564	3300005713	Tropical Forest Soil	REGASEADDFLRATIEQRPYTAAAVALAIGYLIGRFGRRVGY*
Ga0066905_1012394441	3300005713	Tropical Forest Soil	SDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFGRR*
Ga0066903_1008365344	3300005764	Tropical Forest Soil	STAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY*
Ga0066903_1017436511	3300005764	Tropical Forest Soil	AEAIREGASEADDFLRATIEQRPYTAAAVALAIGYLIGRFGRRAGY*
Ga0066903_1034994903	3300005764	Tropical Forest Soil	IRESATGAEDFLRTTIEQRPYTAAAVALGIGYLIGRFGRRNNYAKV*
Ga0066903_1079992931	3300005764	Tropical Forest Soil	AAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY*
Ga0070717_101631544	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KETAANAADAIREGASEADDFLRAAIEERPYTAAAVALAIGYLIGRFGRRANY*
Ga0070712_1013940452	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AKETAADAAEAIRERASEAGDFLRTTIEERPFTAAAIALAIGFLIGRFGHRSDY*
Ga0066659_116695911	3300006797	Soil	AVYGQAKETAANAADAIREGASEADDFLRAAIEERPYTAAAVALTIGYLIGRFGRRTNY*
Ga0075434_1005113971	3300006871	Populus Rhizosphere	TAADAAEAIRDAGSEAGDFLRNAIEERPYTTAAIALGIGFLIGRFGRRGDS*
Ga0075419_114355601	3300006969	Populus Rhizosphere	GQAKDAATSAAEAIRETASEAGDFVRETIERRPYTAAAVALAVGFLVGRFGRREYH*
Ga0066710_1007696333	3300009012	Grasslands Soil	ETAADAAEAIREAGGEAGDFLRTTIEQRPYTTAAVALGIGYLIGRFGHRPY
Ga0126384_104477342	3300010046	Tropical Forest Soil	IRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY*
Ga0126384_110012051	3300010046	Tropical Forest Soil	SDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY*
Ga0126384_113320431	3300010046	Tropical Forest Soil	IRERASEADDFLRATIEQRPYTAAAVALAIGYLIGRFGRRVGY*
Ga0134086_104905222	3300010323	Grasslands Soil	KETAAEAAEAVREAGSEAGDFLRTTIEQRPYTTAAVALGIGYLIGRFGHRPY*
Ga0126372_110127971	3300010360	Tropical Forest Soil	ESASDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY*
Ga0126372_128401921	3300010360	Tropical Forest Soil	TAASAARAIGESADEADDFLRAAIEQHPYTTAAIALGVGFLIGRLGRRDYY*
Ga0126378_118349651	3300010361	Tropical Forest Soil	EAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY*
Ga0126378_129464902	3300010361	Tropical Forest Soil	EAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRAV*
Ga0126379_136635781	3300010366	Tropical Forest Soil	IRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY*
Ga0126383_101766944	3300010398	Tropical Forest Soil	ASDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY*
Ga0153974_10764541	3300012180	Attine Ant Fungus Gardens	VYGQAKEAAATAAEAIRESAGEADDFLRATIEHRPYTAAAVALGIGYLIGRFGRRANY*
Ga0137362_105618161	3300012205	Vadose Zone Soil	SAAEAIRERASEAEDVLRTTIEQRPYTTAAIALGIGYLIGRFGRRAD*
Ga0137380_111186851	3300012206	Vadose Zone Soil	GQAKEAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY*
Ga0137376_106971992	3300012208	Vadose Zone Soil	KERASDAVEAIRESASGAEDFLRTTIEERPYTAVAVALGIGYLIGRFSRRDNY*
Ga0137384_105185881	3300012357	Vadose Zone Soil	AEAAEAIREAGGEAGDFLRTTIEQRPYTTAAVALGIGYLIGRFGHRPY*
Ga0137368_101338882	3300012358	Vadose Zone Soil	MRERANEAEDVLRTTIEQRPYTTAAIALGIGYLIGRFGRRADF*
Ga0137359_103142881	3300012923	Vadose Zone Soil	AEAIRERASEAEDVLRTTIEQRPYTTAAIALGIGYLIGRFSRHAHF*
Ga0126369_111733042	3300012971	Tropical Forest Soil	AADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY*
Ga0164309_119150951	3300012984	Soil	ATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRIDY*
Ga0134073_103909081	3300015356	Grasslands Soil	AEAIRDAGNEAGDFLRTAIEERPYTTAAIALGIGFLIGRFGRRGDY*
Ga0134072_100407192	3300015357	Grasslands Soil	QANETAADAAEAIREAGGEAGDFLRTTIEQRPYTTAAVALGIGYLIGRFGHRPY*
Ga0132256_1006195691	3300015372	Arabidopsis Rhizosphere	AKDAATSAAEAIRESASDAGDFVRETIERRPYTAAAVALAVGFLIGRFGRTN*
Ga0182041_112039992	3300016294	Soil	KDAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0182032_101991394	3300016357	Soil	QAVRDTAGTADDLVRTTLEQRPYTAAAIALGVGFLIGRFSHRNY
Ga0182034_115802021	3300016371	Soil	GQVKESASDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0182034_116701181	3300016371	Soil	ADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0182040_101374893	3300016387	Soil	QAKEAAATAADAIRESAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY
Ga0182037_102559712	3300016404	Soil	DVYGQVKESASDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0182038_114071111	3300016445	Soil	GQAKDAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVNY
Ga0066667_102253901	3300018433	Grasslands Soil	LQDAYGQATETAADAAEVIRKSASGAEDFLRTTIEERPYTAAAVALGVGYLIGRFSRREN
Ga0066669_118249081	3300018482	Grasslands Soil	AMETAADAAEVMRKSASGAEDFLRTTIEERPYTVAAVALGIGYLIGRFSRRENY
Ga0210408_101143273	3300021178	Soil	DAVEAIRESTSGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0126371_109248081	3300021560	Tropical Forest Soil	AAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0207684_100423741	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0207684_116951241	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GQAKEAAATAADAIRESAGEADDFLRATIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0209266_12085292	3300026327	Soil	EVMRKSASGAEDFLRTTIEERPYTVAAVALGIGYLIGRFSRRENY
Ga0209160_12666741	3300026532	Soil	AIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0209465_101630222	3300027874	Tropical Forest Soil	TTAADAIRESAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0209069_109498231	3300027915	Watersheds	AKDTAANAAQAARETAHGAEDFLRKTIESRPYTVAAVALGIGFLIGRMGRRDYW
Ga0247612_11272572	3300030592	Soil	VANAAQAVREGAGEAEDFLRKTIEQRPYTTAVVALALGFMIGSLSRRAY
Ga0318515_100855881	3300031572	Soil	VLCRNYGQAKEAAATAADAIRESAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY
Ga0310915_100976412	3300031573	Soil	AKDAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0310915_106151562	3300031573	Soil	AATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVNY
Ga0318574_100736153	3300031680	Soil	DVAATTAQAVRNTAGTADDLVRTTIEQRPYTAAAIALGVGFLIGRFSHRNY
Ga0306917_100872401	3300031719	Soil	AIRESTTGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0307469_120180121	3300031720	Hardwood Forest Soil	KETTANAADAIREGASEADDFLRAAIEERPYTAAAVALAIGYLIGRFGRRANY
Ga0306918_105758292	3300031744	Soil	DAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0318502_100607851	3300031747	Soil	YGQAKEAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY
Ga0318537_100649811	3300031763	Soil	QAKDAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0318537_102309341	3300031763	Soil	IRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0318535_102553932	3300031764	Soil	YGQAKEAAATAADAIRESAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY
Ga0318521_100946771	3300031770	Soil	AIRESAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRADY
Ga0318521_101422682	3300031770	Soil	TAQAVRNTAGTADDLVRTTIEQRPYTAAAIALGVGFLIGRFSHRNY
Ga0318546_109740813	3300031771	Soil	YGQVKESASDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0318543_102983122	3300031777	Soil	ATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0318548_105970981	3300031793	Soil	VYGQVMESASDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0318550_103540101	3300031797	Soil	DAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0318567_102401141	3300031821	Soil	AQAVRNTAGTADDLVRTTIEQRPYTAAAIALGVGFLIGRFSHRNY
Ga0310917_100887051	3300031833	Soil	EAIRESASGAEDFLRATIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0310917_111183713	3300031833	Soil	ESASDAVEAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0318527_104080482	3300031859	Soil	AATTAQAVRDTADTADDLVRTTIEQRPYTAAAIALGVGFLIGRFSHRNY
Ga0306919_100330451	3300031879	Soil	DAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVNY
Ga0306923_106657023	3300031910	Soil	YGQAKEAAATAADAIRETADEADDFLRATIEQRPYTAAAVALAIGYLIGRFGRRVGY
Ga0306921_103544291	3300031912	Soil	TAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVNY
Ga0306921_114888962	3300031912	Soil	VYGQVKESASDAVDAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0310912_112546151	3300031941	Soil	QAKDAAVSAAEAVGDRASQADDFLRAMIEQRPYTTAAVALGIGFLIGRFSRGGRY
Ga0310913_101093721	3300031945	Soil	VEAIRESTTGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0306922_103577053	3300032001	Soil	AVDAIRESASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0306922_109019681	3300032001	Soil	YGQAKETAADAAEAIRESAGEAGDFLRTTIEERPYTTAAIALRIGFLIGRFGRRSDY
Ga0306922_120146842	3300032001	Soil	AATTAQAVRDTAGTADDLVRTTIEQRPYTAAAIALGVGFLIGRFSHRNYY
Ga0318506_101020641	3300032052	Soil	RETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0318570_102399753	3300032054	Soil	LQDVYGQVKETTADAADAIRDRAGEAGDFLRVTIEERPFTAAAIALGIGFLIGRFGRRAD
Ga0318510_101294312	3300032064	Soil	VRNTAGTADDLVRTTIEQRPYTAAAIALGVGFLIGRFSHRNY
Ga0306924_100733455	3300032076	Soil	AAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVNY
Ga0318518_1002076910	3300032090	Soil	QVKETASDAVEAIRESASGAEDFLRATIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0318518_103880522	3300032090	Soil	YPMARATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0307471_1037364642	3300032180	Hardwood Forest Soil	AIRDSASGAEDFLRTTIEERPYTAAAVALGIGYLIGRFSRRDNY
Ga0306920_1024401091	3300032261	Soil	YGQAKEAAATAADAIRETAGEADDFLRTTIEQRPYTAAAVALAIGYLIGRFGRRVDY
Ga0306920_1036268292	3300032261	Soil	QAVSDSAGTADDLVRTTIEQRPYTAAAIALGVGFLIGRFSRRNYY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097770

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences