Metagenome Family F097758

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097758
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	83 residues
Representative Sequence	EPSTLADPPDPPDFGEHTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG
Number of Associated Samples	83
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.83 %
% of genes near scaffold ends (potentially truncated)	89.42 %
% of genes from short scaffolds (< 2000 bps)	91.35 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.423 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.423 % of family members)
Environment Ontology (ENVO)	Unclassified (48.077 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.077 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.57% β-sheet: 0.00% Coil/Unstructured: 78.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF02617	ClpS	6.73
PF04266	ASCH	5.77
PF07690	MFS_1	4.81
PF02627	CMD	2.88
PF09948	DUF2182	2.88
PF00144	Beta-lactamase	2.88
PF01925	TauE	1.92
PF00141	peroxidase	1.92
PF03976	PPK2	0.96
PF00313	CSD	0.96
PF00496	SBP_bac_5	0.96
PF08883	DOPA_dioxygen	0.96
PF00583	Acetyltransf_1	0.96
PF01425	Amidase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	6.73
COG2411	Predicted RNA-binding protein, contains PUA-like ASCH domain	General function prediction only [R]	5.77
COG3097	Uncharacterized conserved protein YqfB, UPF0267 family	Function unknown [S]	5.77
COG4405	Predicted RNA-binding protein YhfF, contains PUA-like ASCH domain	General function prediction only [R]	5.77
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	2.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	2.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	2.88
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	2.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	2.88
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	1.92
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.92
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.96
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.96
COG3805	Aromatic ring-cleaving dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.42 %
Unclassified	root	N/A	35.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.42 %
Unclassified	root	N/A	35.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.42 %
Unclassified	root	N/A	35.58 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.15 %
Unclassified	root	N/A	35.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.65 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	5.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.92 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	1.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	5.77 %
Rubellimicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium	1.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	5.77 %
Rubellimicrobium aerolatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	1.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
unclassified Ensifer	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer	5.77 %
Rubellimicrobium aerolatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	1.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Ensifer sp. MPMI2T	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. MPMI2T	5.77 %
Rubellimicrobium aerolatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	1.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10026721	All Organisms → cellular organisms → Bacteria → Proteobacteria	2375	Open in IMG/M
3300004080\|Ga0062385_10233515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1015	Open in IMG/M
3300004092\|Ga0062389_102848618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300005176\|Ga0066679_10559721	Not Available	745	Open in IMG/M
3300005435\|Ga0070714_100981003	Not Available	822	Open in IMG/M
3300005437\|Ga0070710_10115186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1620	Open in IMG/M
3300005439\|Ga0070711_100542824	Not Available	963	Open in IMG/M
3300005439\|Ga0070711_100822829	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005439\|Ga0070711_101895399	Not Available	524	Open in IMG/M
3300005610\|Ga0070763_10206561	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300006046\|Ga0066652_101504975	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300006175\|Ga0070712_101771326	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300006806\|Ga0079220_10149203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1287	Open in IMG/M
3300009792\|Ga0126374_11115754	Not Available	626	Open in IMG/M
3300010046\|Ga0126384_10073059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2443	Open in IMG/M
3300010046\|Ga0126384_11863246	Not Available	572	Open in IMG/M
3300010048\|Ga0126373_11196878	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300010048\|Ga0126373_12676851	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300010359\|Ga0126376_10073030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2518	Open in IMG/M
3300010361\|Ga0126378_10156495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2325	Open in IMG/M
3300010361\|Ga0126378_12531482	Not Available	586	Open in IMG/M
3300010366\|Ga0126379_11872126	Not Available	703	Open in IMG/M
3300010366\|Ga0126379_13864946	Not Available	502	Open in IMG/M
3300010376\|Ga0126381_103321164	Not Available	634	Open in IMG/M
3300010376\|Ga0126381_103926487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	579	Open in IMG/M
3300010398\|Ga0126383_10506887	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300012211\|Ga0137377_11390547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	630	Open in IMG/M
3300012582\|Ga0137358_11050225	Not Available	523	Open in IMG/M
3300012948\|Ga0126375_10175768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1379	Open in IMG/M
3300012971\|Ga0126369_10979432	Not Available	933	Open in IMG/M
3300012971\|Ga0126369_12946253	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300015372\|Ga0132256_100790226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1065	Open in IMG/M
3300015373\|Ga0132257_102657280	Not Available	652	Open in IMG/M
3300016294\|Ga0182041_11667242	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300016319\|Ga0182033_10567715	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300016357\|Ga0182032_11411858	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300016371\|Ga0182034_11948170	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300016404\|Ga0182037_10541485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	981	Open in IMG/M
3300016422\|Ga0182039_11089250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	719	Open in IMG/M
3300016422\|Ga0182039_12264222	Not Available	502	Open in IMG/M
3300017974\|Ga0187777_10499449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	850	Open in IMG/M
3300020199\|Ga0179592_10486451	Not Available	530	Open in IMG/M
3300020579\|Ga0210407_10393529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300020583\|Ga0210401_11450770	Not Available	543	Open in IMG/M
3300021178\|Ga0210408_10464769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300021406\|Ga0210386_11050233	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300021432\|Ga0210384_11541223	Not Available	570	Open in IMG/M
3300021559\|Ga0210409_11190710	Not Available	637	Open in IMG/M
3300021560\|Ga0126371_12187585	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300021560\|Ga0126371_12744116	Not Available	597	Open in IMG/M
3300025915\|Ga0207693_11284617	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300025916\|Ga0207663_10453845	All Organisms → cellular organisms → Bacteria → Proteobacteria	989	Open in IMG/M
3300025916\|Ga0207663_10693288	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300025928\|Ga0207700_11654437	Not Available	565	Open in IMG/M
3300027765\|Ga0209073_10083614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1104	Open in IMG/M
3300027775\|Ga0209177_10129724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	834	Open in IMG/M
3300027884\|Ga0209275_10340045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	839	Open in IMG/M
3300031128\|Ga0170823_16095015	Not Available	551	Open in IMG/M
3300031474\|Ga0170818_101968014	Not Available	572	Open in IMG/M
3300031545\|Ga0318541_10086666	Not Available	1664	Open in IMG/M
3300031546\|Ga0318538_10738876	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300031561\|Ga0318528_10668553	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031573\|Ga0310915_10158916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. MPMI2T	1566	Open in IMG/M
3300031573\|Ga0310915_10697291	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300031680\|Ga0318574_10396911	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300031680\|Ga0318574_10643047	Not Available	622	Open in IMG/M
3300031681\|Ga0318572_10395103	Not Available	822	Open in IMG/M
3300031682\|Ga0318560_10200085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300031713\|Ga0318496_10738217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	543	Open in IMG/M
3300031713\|Ga0318496_10781506	Not Available	526	Open in IMG/M
3300031719\|Ga0306917_10024567	All Organisms → cellular organisms → Bacteria	3777	Open in IMG/M
3300031719\|Ga0306917_10059114	Not Available	2611	Open in IMG/M
3300031724\|Ga0318500_10647683	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031736\|Ga0318501_10827270	Not Available	513	Open in IMG/M
3300031744\|Ga0306918_11227106	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031747\|Ga0318502_10315145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. MPMI2T	922	Open in IMG/M
3300031768\|Ga0318509_10148492	Not Available	1292	Open in IMG/M
3300031768\|Ga0318509_10374207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300031771\|Ga0318546_10071146	Not Available	2221	Open in IMG/M
3300031781\|Ga0318547_10249902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. MPMI2T	1069	Open in IMG/M
3300031781\|Ga0318547_10556141	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300031782\|Ga0318552_10378976	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300031792\|Ga0318529_10272026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	789	Open in IMG/M
3300031796\|Ga0318576_10408216	Not Available	642	Open in IMG/M
3300031893\|Ga0318536_10171776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. MPMI2T	1103	Open in IMG/M
3300031910\|Ga0306923_11906982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300031942\|Ga0310916_10358280	All Organisms → cellular organisms → Bacteria → Proteobacteria	1239	Open in IMG/M
3300031947\|Ga0310909_10006487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7687	Open in IMG/M
3300031954\|Ga0306926_12754017	Not Available	532	Open in IMG/M
3300032001\|Ga0306922_10761953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1014	Open in IMG/M
3300032010\|Ga0318569_10296056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. MPMI2T	753	Open in IMG/M
3300032035\|Ga0310911_10579022	Not Available	651	Open in IMG/M
3300032035\|Ga0310911_10930835	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300032051\|Ga0318532_10291806	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300032059\|Ga0318533_11362035	Not Available	518	Open in IMG/M
3300032064\|Ga0318510_10458976	Not Available	548	Open in IMG/M
3300032076\|Ga0306924_10980597	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300032205\|Ga0307472_102270302	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300032895\|Ga0335074_11165001	Not Available	655	Open in IMG/M
3300033289\|Ga0310914_10995761	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300033289\|Ga0310914_11228230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300033290\|Ga0318519_10420371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	798	Open in IMG/M
3300033290\|Ga0318519_10498699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. MPMI2T	733	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.08%
Host-Associated	Host-Associated	1.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.15%
Aquatic	Environmental → Aquatic	1.92%
Plants	Host-Associated → Plants	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.15%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.73%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100267217	3300001867	Forest Soil	IYGRQPSVLTDPPDPPDTESRAQRAFESAMTPHEGPETGMSFFITKAQKAELRRRGYSEEQTRELKPEDAHRALGLIG*
Ga0062385_102335151	3300004080	Bog Forest Soil	YGREPNALADPPDPPDFGEQTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG*
Ga0062389_1028486181	3300004092	Bog Forest Soil	GDQGQRVFEPSMMAHKEAETGMSFFITKARKAALRRLGYSEEQIREIKPEDAHRALGIARI*
Ga0066679_105597211	3300005176	Soil	GLEIEARIKKERDLDNLIQIPQTIKPLLQNIYGREPNALADPPDPPDFGEQTQRVSDASMTPHEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRTLGLIG*
Ga0070714_1009810031	3300005435	Agricultural Soil	IYGRRPGALADPPDPPDIRDHAERVFEASITPHKVETGMSFFITKAQKAELRRLGYSEEQIREMKPEDAHRALGLIS*
Ga0070710_101151861	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	NEADADKLIQILQTIKPLLRSIYGLQPRVFADPSDPPDIRGHAQRSFEPSMEANKEVKAGMSFFITKTQKGELRRRGYSEEQIREMKPEDAHRALGLIGRGEES*
Ga0070711_1005428242	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EPSTLADPPDPPDFGEHTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG*
Ga0070711_1008228292	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	QILQSIKPLLQQIYGRRPGALADPPDPPDIRDHAERVFEASITPHKVETGMSFFITKAQKAELRRLGYSEEQIREMKPEDAHRALGLIS*
Ga0070711_1018953991	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NIYGREPSPLAGPPDPPDFGEHTHRVFGASMTPHEGETGMSFFITKVQKAELRRRGYTEEQIREMKPEDAHRALGLIA*
Ga0070763_102065613	3300005610	Soil	RIYGGQSSVLPDPPDIGNQGQRVFEPSMTARKEAETAMSFFITKAQKAALRRLGYSGEQIREMKPEDAHRALGLIS*
Ga0066652_1015049751	3300006046	Soil	IDAKIKNEADVDRLIQILQTIKPLLQSIYGGQPSVSVDPPDTGSRADGVFEPSMTLHEAESGMSFIITRAQKAELRRRGYSEEQIRDMKPEDAHRALGLIS*
Ga0070712_1017713262	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DPPDPPDIRDHAERVFEASITPDKVETGMSFFITKAQKAALRRLGYSEEQIREMKPEDAHRALGLIS*
Ga0079220_101492031	3300006806	Agricultural Soil	KKESDLDNLIQILQTIKPLLENIYGREPNALVNPPDPPDLGEHRQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYTEDQIREMKPEDAHRALGLIG*
Ga0126374_111157541	3300009792	Tropical Forest Soil	MEVQGRQSGGLGDPPDPPPNIAEHRQHAFEPSMTPHEADTGMSFLITKAQKAELRRLGYSEEQIREMKPEDAHRALGLIS*
Ga0126384_100730591	3300010046	Tropical Forest Soil	QPSVFADPSDPPDIGDRAQRSFEPSIEANKEAEAGMSFFITKAQKAELRRFGYTDEQIREIKPGDAHMALGLIT*
Ga0126384_118632461	3300010046	Tropical Forest Soil	QTIKPLLQSIYGLKPSVFADPSDPPDIRDHVQRSIEPSMEADKEAGAGMSFFITKTQKGELRRLGYSEEQIREMKPEDAHRALGLIS*
Ga0126373_111968782	3300010048	Tropical Forest Soil	LQSIYGRQPSVLADDPPDIGDHAQDVFEPSMTPHEAETGMSLFNTKAQKAELRRLAYTEEQIREMKPEDGHRALGLIS*
Ga0126373_126768512	3300010048	Tropical Forest Soil	MKPLLGVIYGRQPSALLDPPDVGEHAERVFGASMTADKEAETGMSFFITKAQKAELQRLGYSEEQIREMKPEDAHRALGLIT*
Ga0126376_100730301	3300010359	Tropical Forest Soil	LQAIKPLLQNIYGRQSGGLVDPPDPPPNIAEHRQHAFEPSMTPHEADTGMSFLITKAQKPELRRLGYSEEQIREMKPEDAHRALGLIS*
Ga0126378_101564951	3300010361	Tropical Forest Soil	TPLPDPPDPPDIGDHALRVSEASITPHQEAETGMSFIITKAQKAELRWRGYTEEQIREMKPADAHRALGLIS*
Ga0126378_125314821	3300010361	Tropical Forest Soil	LLRDIYGQQPSVLANPPDPPEIEDHTHRTFKAEMTAHKEAEAGMSFFITKTLKAELRQRGYSEEQIRDMKPEDAHRALGLIS*
Ga0126379_118721262	3300010366	Tropical Forest Soil	LEITARIKNEGDAENLIQILQTIKPLLQKIYGWQPSARADPPDPPDTANDAQRVFRASMTADKEAKTGMSFFITKAQKAELRRLGYSEEQIHEMKPEDAHRALRLIS*
Ga0126379_138649462	3300010366	Tropical Forest Soil	MKPLLGVIYGRQPSALLDPPDVGEHAERVFGASMTADKEAETGMSFFITKAQKAELQRLGYSEEQIREMKPED
Ga0126381_1033211642	3300010376	Tropical Forest Soil	ALADPPDIGDHAQRVFEPSMTAHKEAGTGMSFFITKAQKAELQRLGYSEEQIREMKPEDAHRALGLIT*
Ga0126381_1039264871	3300010376	Tropical Forest Soil	TIKPLLQSIYGQQPSVLADPPEIEDHAPRTFKAAMTAHEGVETGVSFIITRAQKAELRQRGYSEEQIREMTPEDAHRVLGLIR*
Ga0126383_105068873	3300010398	Tropical Forest Soil	SIYGLQPSVFADPSDPPDIGDRAQRSFEPSIEANKEAEAGMSFFITKAQKAELRRLGYTDEQIREMKPEDAHRALGLIT*
Ga0137377_113905472	3300012211	Vadose Zone Soil	IQPLLQNLYGREPSTLADPPDSPDLGEHTQRVFDASMTPHKEEETGMSFFIAKAQKAELRRRGYSEEQTREMKPEDAHRALGLIG*
Ga0137358_110502251	3300012582	Vadose Zone Soil	IKKERDLDNLIQILQTIKPLLQNIYGREPSTRADAPDPPDFGEQTQRVFDASMTPHEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRTLGLIG*
Ga0126375_101757681	3300012948	Tropical Forest Soil	MEVQGRQSGGLGDPPDPPPNIAEHRQHAFEPSMTPHEADTGMSFLITKAQKAELRRLGYSDEQIREMKPEDAHRALGLIS*
Ga0126369_109794321	3300012971	Tropical Forest Soil	LQIKPLLQNIYGPQPSAVADPPDIGDHPQRIFEPSTAHKEAETGMSFFITKAQKAELQRLGYSEEQIREMKPEDAHRALRLIS*
Ga0126369_129462531	3300012971	Tropical Forest Soil	PSALADPPDPPDFGEDRQRVFDASMTPHEAETGVSFFITKGQKAELRRLGYTEEQIREMQPEDAHRALGLIS*
Ga0132256_1007902261	3300015372	Arabidopsis Rhizosphere	QILQTIEPLLRSIYGLQPSVFADPSDPPDIRDHAQRSFEPSMEANKEAEAGMSFFITKTQKAELRRRGYTEDQIREMKPEDDAHRALGLIG*
Ga0132257_1026572801	3300015373	Arabidopsis Rhizosphere	LRNIYGREPSTLADSPDPPDLGEHTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYTEDQIREMKPEDAHRALGLIG*
Ga0182041_116672421	3300016294	Soil	NLIHILQTIKPLLRDIYGQQPSALDDPPDPPEIEDHAQRTFKAAMTAHKGAESGMSFIITKAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0182033_105677152	3300016319	Soil	ERSVSTSNAKTACRVAKAPVLRARADPPDIGDHAQRNFEPSMEADKGAEAGMSFFITKAQKAELRRLGYTDEQIREMKPEDAHRALGLIS
Ga0182032_114118581	3300016357	Soil	SNAKTACRVAKAPVLRARADPPDIGDHAQRNFEPSMEADKGAEAGMSFFITKAQKAELRRLGYTDEQIREMKPEDAHRALGLIS
Ga0182034_105690011	3300016371	Soil	TALGDPPDALDPGDHVKRVFEGSMAPHKETETGISFIITKAQKAELRQRGYTEEQIREMKPEDAHRALRLIS
Ga0182034_119481702	3300016371	Soil	YGLQPSAFADPSDAPDLRGHVQRSIEPSMEANKEAGAGMSFFITKTQKGELRRLGYSEEQIREMKPEDAHRALGLIS
Ga0182037_105414851	3300016404	Soil	PLLRDIYGQQPSVLADLPDRPEIEDHAQRTFKAAMTAHKEAETGMSFTITNAQKAELRERGYSEEQIREMKPEDAHRALGLIS
Ga0182039_110892501	3300016422	Soil	PDPPDIGDHAQRSFEPSMEADKGAEAGMSFFITKAQKAELRRLGYTDEQIREMKPEDAHRALGLIS
Ga0182039_122642221	3300016422	Soil	DNLIHILQTIKPLLRDIYGQQPSVLTDPLDPPEIEDHAQRTFKAAMTAHKGAETGMSFIITRAQKDELRRRGYSEEQIREMTPEDAHRTLGLIS
Ga0187777_104994491	3300017974	Tropical Peatland	APDPPDTGVHAQRDFEASITPHQEAEAGMSFIITKAQKAELRRRGYTEEQIREMKPADAHRALGLIS
Ga0179592_104864512	3300020199	Vadose Zone Soil	GGLEIEARIKKEPDLEQLIKILQTIQPLLQNLYGREPSTLADPPDPPDLGEHTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG
Ga0210407_103935292	3300020579	Soil	QSSVLPDPPDIGNQGQRVFEPSMTARKEAETAMSFFITKAQKAALRRLGYSGEQIREMKPEDAHRALGLIS
Ga0210401_114507702	3300020583	Soil	ALVDPPDPPDLGEHTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG
Ga0210408_104647692	3300021178	Soil	SVLPDPPDIGDQGQRVFEPSMTARKEAETAMSFFITKAQKAALRRLGYSGEQIREMKPEDAHRALGLIS
Ga0210386_110502331	3300021406	Soil	LQTIKPLLQNIYELEPSTLADPPDPPDFGEHTQRVFDASMMPHKEAATGMSFFITKAQKVELRRRGYSEEQIREMKSEDAHRALGLIG
Ga0210384_115412232	3300021432	Soil	IKILQTIKPLLQNIYGREPSTLADPANPADPPDLGEHTQRVFDASMTPHEAETGMSFFITKAQKAELRRRGYSEEQIREMKPKDAHRALGLIG
Ga0210409_111907102	3300021559	Soil	KARIKKERDLDNLIQILQTIKPLLQNIYGREPNALVDPPDPPDLGEHTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG
Ga0126371_121875851	3300021560	Tropical Forest Soil	SALADPPDPPDFGEDRQRVFDASMTPHEAETGVSFFITKGQKAELRRLGYTEEQIREMQPEDAHRALGLIS
Ga0126371_127441162	3300021560	Tropical Forest Soil	LQSIYGLQPSAFADPSDAPDLRDDAQRSFEPSMEANKEAGAGMSFFITKTQKGELRRLGYSEEQIREMKPEDAHRALGLIT
Ga0207693_112846172	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	DPPDPPDIRDHAERVFEASITPDKVETGMSFFITKAQKAELRRLGYSEEQIREMKPEDAHRALGLIS
Ga0207663_104538452	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	NIYGREPSPLAGPPDPPDFGEHTHRVFGASMTPHEGETGMSFFITKVQKAELRRRGYTEEQIREMKPEDAHRALGLIA
Ga0207663_106932881	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	QILQSIKPLLQQIYGRRPGALADPPDPPDIRDHAERVFEASITPHKVETGMSFFITKAQKAELRRLGYSEEQIREMKPEDAHRALGLIS
Ga0207700_116544372	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DLDNLIQILQTIKPLLQNIYGREPSTLADPPDPPDFGEQTQRVFDASMTPHEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG
Ga0209073_100836143	3300027765	Agricultural Soil	PDPPDLGEHRQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYTEDQIREMKPEDAHRALGLIG
Ga0209177_101297241	3300027775	Agricultural Soil	SDLDNLIQILQTIKPLLQNIYGREPNALVNPPDPPDLGEHRQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYTEDQIREMKPEDAHRALGLIG
Ga0209275_103400451	3300027884	Soil	YGREPNALVDPPDPPDLGEHTQRVFDASMTPHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIG
Ga0170823_160950151	3300031128	Forest Soil	PDLGEHTQRVFDASMTPHEAEAGMSFFITKAQKAELRRRGYSEEQIREMKPEYAHRALGLIG
Ga0170818_1019680141	3300031474	Forest Soil	EHLGTPPSTLADCFDPPDPSDLGEHTQRVFDASMTAHEAETGMSFFITKAQNAELRRRGYSEEQIREMKLEDAHWALGLIG
Ga0318541_100866663	3300031545	Soil	PSTLPDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0318538_107388762	3300031546	Soil	LADPPDIQGHAPRVFEPPMTPHEAETGMSFIITRVQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0318528_106685532	3300031561	Soil	PDPPYFGESTQPVFDASMTAHKEAETGMSFFITKAQKSELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0310915_101589162	3300031573	Soil	NIYPRQPSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEIRGMRPEDAHRALGLING
Ga0310915_106972911	3300031573	Soil	KPLLPNIYGQQPSAVADSPDVGEHRQHAFDDSMTPQKQAETGVSFFITKTQKGELRRLGYSEEQIREMKPEDAHRALGLIS
Ga0318574_103969112	3300031680	Soil	PDPPEIEDHAQRTFKAAMTAHKGAEAGMSFIITRAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0318574_106430471	3300031680	Soil	YGRQPSTLPDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0318572_103951031	3300031681	Soil	LIQILQTIKPLLQKIYGRQPSTLPDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0318560_102000852	3300031682	Soil	MQRTSSKILQTIKPLLQNIYGQEPTALGDPPDALDPEDHVESVFEGSMTPHKETATGISFIITKAQKTELRQRGYTEQQIREMKPEDAHRALGLIS
Ga0318496_107382172	3300031713	Soil	AKIRKGKDLDNLIRVLQTIKPLLPNIYGQQPSAVADSPDVGEHRQHAFDDSMTPQKQAETGVSFFITKTQKGELRRLGYSEEQIREMKPEDAHRALGLIS
Ga0318496_107815061	3300031713	Soil	PDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0306917_100245673	3300031719	Soil	ADVENLIQILQTIKPLLQNIYGRQPSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEIRGMRPEDAHRALGLING
Ga0306917_100591144	3300031719	Soil	NQKRGDAENLIQIRQTIKPLLQKIYGRQPSTLPDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0318500_106476831	3300031724	Soil	PVLRARADPPDPPDIGDHAQRSFEPSMEADKGAEAGMSFFITKAQKAELRRLGYTDEQIREMKPEDAHRALGLIS
Ga0318501_108272701	3300031736	Soil	LRNIYGREPGALADPPDPPYFGESTQPVFDASMTAHKEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0306918_112271062	3300031744	Soil	LADPPDPPEIEDHAQRTFKAAMTAHKGAETGMSFIITRAQKDELRRRGYSEEQIREMKPEDAHRALGLIP
Ga0318502_103151452	3300031747	Soil	IQILQTIKPLLQNIYERQPSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEIRGMRPEDAHRALGLING
Ga0318509_101484921	3300031768	Soil	QIRQTIKPLLQKIYGRQPSTLPDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0318509_103742072	3300031768	Soil	EKLIQILETIKPLLQQIYGPQPTALTEPPDPPDIGDHAQRVFEASITPHQEAETGMTFIITKAQKAELRRRGYTEEQIREMKPADAHRALGLIG
Ga0318546_100711461	3300031771	Soil	AARIKSEGDAENLIQIRQTIKPLLQKIYGRQPSTLPDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0318547_102499022	3300031781	Soil	DRIKSEADVENLIQILQTIKPLLQNIYPRQPSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEIRGMRPEDAHRALGLING
Ga0318547_105561411	3300031781	Soil	IYGQQPSVLADPPDPPEIEDHAQRTFKAAMTAHKGAESGMSFIITKAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0318552_103789761	3300031782	Soil	LQTIKPLLQSIYGQQPSVLADPPDPPEIEDHAQRTFKAAMTAHKGAESGMSFIITKAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0318529_102720262	3300031792	Soil	QPTAFPDPPDIGDHAQRTFEASITPHQEAETGMSFIITKAQKAELRRRGYTEEQIREMKPADAHRALGLIG
Ga0318576_104082161	3300031796	Soil	VLADPPDPPDFGEYTQPVFDASTMAHKEAETGMSFFITKAQKAELRRRGYSEEQIHEMKPEDAHRGLGLIG
Ga0318536_101717761	3300031893	Soil	LEVADRIKSEADVENLIQILQTIKPLLQNIYPRQPSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEIRGMRPEDAHRALGLING
Ga0306923_119069822	3300031910	Soil	RPAILAKVQLGDIGDHPQPVFEASITPRKEAETGVSFIITRAQKAELRHRGYTEEQIREMKPAEAHRALGLIS
Ga0310916_103582801	3300031942	Soil	EEDVDNLIHILQTIKPLLQSIYGQQPSVLADPPDPPEIEDHAQRTFKAAMTAHKGAESGMSFIITKAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0310909_100064876	3300031947	Soil	PSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEICGMRPEDAHRALGLIS
Ga0306926_127540172	3300031954	Soil	DPPDPPDFGEYTQPVFDASTMAHKEAETGMSFFITKAQKAELRRRGYSEEQIHEMKPEDAHRGLGLIG
Ga0306922_107619532	3300032001	Soil	LAKVQLGDIGDHPQPVFEASITPRKEAETGVSFIITRAQKAELRHRGYTEEQIREMKPAEAHRALGLIS
Ga0318569_102960561	3300032010	Soil	QILQTIKPLLQNIYGRQPSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEICGMRPEDAHRALGLING
Ga0310911_105790221	3300032035	Soil	EKDVDKLIHILQTIKPLLRDIYGQQPSVLADPLDPPEIEDHTHRTFKAAMTTHKEAEGGMSFFITKTQKAELRQRGYSEEQIREMTPEDAHRVLGLIS
Ga0310911_109308351	3300032035	Soil	EEDVDNLIHILQTIKPLLRDIYGQQPSVFADPPEIEDHAQRTFKAAMTAHKGAETGMSFIITRAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0318532_102918061	3300032051	Soil	LPNIYGQQPSAVADSPDVGEHRQHAFDDSMTPQKQAETGVSFFITKTQKGELRRLGYSEEQIREMKPEDAHRALGLIS
Ga0318533_113620351	3300032059	Soil	NEADVDKLIQILQTIKPLLRDIYGQQPSVLADLPDRPEIEDHAQRTFKAAMTAHKEAETGMSFIITNAQKAELRERGYSEEQIREMKPEDAHRALGLIS
Ga0318510_104589761	3300032064	Soil	LIQIRQTIKPLLQKIYGRQPSTLPDPPDPPDIGDHAQRTDKEAETGMSFFITKAQKAELRRLGYSEEQIRAMKPEEVHRALGLIS
Ga0306924_109805972	3300032076	Soil	YGQQPSVLADPPDPPEIEDHAQRTFKAAMTAHKGAESGMSFIITKAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0307472_1022703022	3300032205	Hardwood Forest Soil	KEPDLEKLIKILQPIRPLLQNIYEREPSTLADSPDPPDLGEHTQRVFDASMTPHEAETGISFFITKAQKAELLRRGYSEEQIREMKPEDAHRALGLSG
Ga0335074_111650011	3300032895	Soil	RDLDNLIQILQSMKLLLQNIYGREPSAPADAPDFGEHTRRVFDASMTPHEAETGMSFFITKAQKAELRRRGYSEEQIREMKPEDAHRALGLID
Ga0310914_109957611	3300033289	Soil	GQQPSVLADPPDPPEIEDHAQRTFKAAMTAHKGAESGMSFIITKAQKDELRRRGYSEEQIREMKPEDAHRALGLIS
Ga0310914_112282302	3300033289	Soil	MQRTSSKILQTIKPLLQNIYGQEPTALGDPPDALDPEDHVESVFEGSMTPHKETATGISFIITKAQKTELRQRGYTEEQIREMKPEDAHRAL
Ga0318519_104203711	3300033290	Soil	QILQTIKPLLRDIYGQQPSVLADPPDPPEIEDHTHRTFKAAMTAHKEAEAGMSFFITKTQKAELRQRGYSEEQIREMKPEDAHRALGLIS
Ga0318519_104986991	3300033290	Soil	RQPSALADPPDSPDPPDIGDHAQRALEASTTPHREAETGMSFIITRAQKAELRRLGYSEEEIRGMRPEDAHRALGLING

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097758

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences