Metagenome / Metatranscriptome Family F097756

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097756
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	48 residues
Representative Sequence	GCAFAHIPTGTTANHRIDIDEGEDRSNVMSVAPSAIGAGTEIGRATP
Number of Associated Samples	84
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.85 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.962 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.538 % of family members)
Environment Ontology (ENVO)	Unclassified (44.231 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.808 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00535	Glycos_transf_2	2.88
PF00072	Response_reg	1.92
PF00106	adh_short	1.92
PF13439	Glyco_transf_4	1.92
PF05598	DUF772	1.92
PF13701	DDE_Tnp_1_4	1.92
PF02371	Transposase_20	1.92
PF13358	DDE_3	1.92
PF13683	rve_3	1.92
PF13614	AAA_31	0.96
PF13495	Phage_int_SAM_4	0.96
PF01755	Glyco_transf_25	0.96
PF00296	Bac_luciferase	0.96
PF04909	Amidohydro_2	0.96
PF04828	GFA	0.96
PF00166	Cpn10	0.96
PF14534	DUF4440	0.96
PF00512	HisKA	0.96
PF07883	Cupin_2	0.96
PF01548	DEDD_Tnp_IS110	0.96
PF13340	DUF4096	0.96
PF03592	Terminase_2	0.96
PF07366	SnoaL	0.96
PF04240	Caroten_synth	0.96
PF09490	CbtA	0.96
PF00589	Phage_integrase	0.96
PF01471	PG_binding_1	0.96
PF01361	Tautomerase	0.96
PF07238	PilZ	0.96
PF04986	Y2_Tnp	0.96
PF05050	Methyltransf_21	0.96
PF00011	HSP20	0.96
PF13565	HTH_32	0.96
PF02646	RmuC	0.96
PF14319	Zn_Tnp_IS91	0.96
PF02397	Bac_transf	0.96
PF04392	ABC_sub_bind	0.96
PF03976	PPK2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.88
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.96
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.96
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.96
COG2324	Uncharacterized membrane protein	Function unknown [S]	0.96
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.96
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.96
COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	Cell wall/membrane/envelope biogenesis [M]	0.96
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.96
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
All Organisms	root	All Organisms	49.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
cellular organisms	root	All Organisms → cellular organisms	49.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.69 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.65 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.73 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.92 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.96 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.96 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.96 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.96 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	0.96 %
Synechococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae	0.96 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.96 %
Synechococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus	0.96 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
unclassified Synechococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus	0.96 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.96 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
Synechococcus sp. 1G10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. 1G10	0.96 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.96 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04YM2WS	Not Available	521	Open in IMG/M
3300002245\|JGIcombinedJ26739_100961401	Not Available	738	Open in IMG/M
3300002245\|JGIcombinedJ26739_101135959	Not Available	669	Open in IMG/M
3300004009\|Ga0055437_10139015	Not Available	745	Open in IMG/M
3300005330\|Ga0070690_100782917	Not Available	739	Open in IMG/M
3300005332\|Ga0066388_108722220	Not Available	504	Open in IMG/M
3300005355\|Ga0070671_100241490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1533	Open in IMG/M
3300005355\|Ga0070671_101777175	Not Available	548	Open in IMG/M
3300005364\|Ga0070673_100604314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1001	Open in IMG/M
3300005445\|Ga0070708_101804853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300005518\|Ga0070699_101195422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300005561\|Ga0066699_10807369	Not Available	660	Open in IMG/M
3300005615\|Ga0070702_101427538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300005615\|Ga0070702_101433572	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005764\|Ga0066903_106117300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300005937\|Ga0081455_10204924	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300006031\|Ga0066651_10022208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	2749	Open in IMG/M
3300006175\|Ga0070712_101811528	Not Available	534	Open in IMG/M
3300007982\|Ga0102924_1215316	Not Available	820	Open in IMG/M
3300009038\|Ga0099829_10088424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2387	Open in IMG/M
3300009088\|Ga0099830_11202561	Not Available	629	Open in IMG/M
3300009088\|Ga0099830_11740934	Not Available	520	Open in IMG/M
3300009089\|Ga0099828_10709724	Not Available	903	Open in IMG/M
3300009089\|Ga0099828_10866167	Not Available	808	Open in IMG/M
3300009089\|Ga0099828_11406721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300009090\|Ga0099827_10096501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2342	Open in IMG/M
3300009090\|Ga0099827_11449070	Not Available	598	Open in IMG/M
3300009098\|Ga0105245_12246582	Not Available	599	Open in IMG/M
3300009101\|Ga0105247_10317134	Not Available	1086	Open in IMG/M
3300009143\|Ga0099792_10641631	Not Available	681	Open in IMG/M
3300009143\|Ga0099792_10946514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300010046\|Ga0126384_11561579	Not Available	620	Open in IMG/M
3300010154\|Ga0127503_11207265	Not Available	533	Open in IMG/M
3300010376\|Ga0126381_102820460	Not Available	693	Open in IMG/M
3300010376\|Ga0126381_104079378	Not Available	568	Open in IMG/M
3300010376\|Ga0126381_104862590	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300010379\|Ga0136449_101822218	Not Available	909	Open in IMG/M
3300011120\|Ga0150983_10323821	Not Available	533	Open in IMG/M
3300011269\|Ga0137392_10533023	Not Available	975	Open in IMG/M
3300011269\|Ga0137392_10610949	Not Available	905	Open in IMG/M
3300011270\|Ga0137391_10067773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3061	Open in IMG/M
3300011270\|Ga0137391_10692331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300011271\|Ga0137393_10070885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2780	Open in IMG/M
3300012096\|Ga0137389_10786527	Not Available	817	Open in IMG/M
3300012204\|Ga0137374_10298104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1324	Open in IMG/M
3300012205\|Ga0137362_11175483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	651	Open in IMG/M
3300012207\|Ga0137381_10210208	All Organisms → cellular organisms → Bacteria	1687	Open in IMG/M
3300012208\|Ga0137376_11542348	Not Available	555	Open in IMG/M
3300012209\|Ga0137379_10413176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1258	Open in IMG/M
3300012210\|Ga0137378_10516759	Not Available	1102	Open in IMG/M
3300012211\|Ga0137377_11559725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	585	Open in IMG/M
3300012211\|Ga0137377_11612715	Not Available	572	Open in IMG/M
3300012354\|Ga0137366_10142535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1805	Open in IMG/M
3300012357\|Ga0137384_11149293	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300012359\|Ga0137385_10367326	Not Available	1230	Open in IMG/M
3300012359\|Ga0137385_10963923	Not Available	704	Open in IMG/M
3300012361\|Ga0137360_10922346	Not Available	753	Open in IMG/M
3300012362\|Ga0137361_10670621	Not Available	948	Open in IMG/M
3300012363\|Ga0137390_10333010	Not Available	1499	Open in IMG/M
3300012363\|Ga0137390_10632036	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300012363\|Ga0137390_10791858	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012363\|Ga0137390_10939364	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300012469\|Ga0150984_104673928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. 1G10	2250	Open in IMG/M
3300012683\|Ga0137398_10157021	All Organisms → cellular organisms → Bacteria → Proteobacteria	1480	Open in IMG/M
3300012923\|Ga0137359_11171673	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300012930\|Ga0137407_10897036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300014969\|Ga0157376_11709276	Not Available	665	Open in IMG/M
3300015357\|Ga0134072_10083986	Not Available	951	Open in IMG/M
3300015372\|Ga0132256_100521704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1299	Open in IMG/M
3300015373\|Ga0132257_103594073	Not Available	564	Open in IMG/M
3300015374\|Ga0132255_101427848	Not Available	1046	Open in IMG/M
3300016357\|Ga0182032_11578216	Not Available	571	Open in IMG/M
3300017930\|Ga0187825_10151082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	821	Open in IMG/M
3300018468\|Ga0066662_11128697	Not Available	786	Open in IMG/M
3300018482\|Ga0066669_10862153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	807	Open in IMG/M
3300020582\|Ga0210395_10257406	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300020582\|Ga0210395_10338975	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300021171\|Ga0210405_10088845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2436	Open in IMG/M
3300021401\|Ga0210393_11021584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	669	Open in IMG/M
3300021403\|Ga0210397_11436871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	536	Open in IMG/M
3300021432\|Ga0210384_10510946	Not Available	1081	Open in IMG/M
3300021476\|Ga0187846_10479483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	509	Open in IMG/M
3300021560\|Ga0126371_11039445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	960	Open in IMG/M
3300021560\|Ga0126371_13700965	Not Available	516	Open in IMG/M
3300025569\|Ga0210073_1009465	Not Available	1869	Open in IMG/M
3300025931\|Ga0207644_10538962	Not Available	965	Open in IMG/M
3300025941\|Ga0207711_11349804	Not Available	655	Open in IMG/M
3300027535\|Ga0209734_1007608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1938	Open in IMG/M
3300027610\|Ga0209528_1043293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	997	Open in IMG/M
3300027616\|Ga0209106_1046103	Not Available	971	Open in IMG/M
3300027645\|Ga0209117_1047196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1287	Open in IMG/M
3300027651\|Ga0209217_1035235	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300027655\|Ga0209388_1107972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300027738\|Ga0208989_10045371	All Organisms → cellular organisms → Bacteria → Proteobacteria	1525	Open in IMG/M
3300031058\|Ga0308189_10321967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	612	Open in IMG/M
3300031122\|Ga0170822_16093474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300031474\|Ga0170818_102648410	Not Available	706	Open in IMG/M
3300031708\|Ga0310686_103621353	Not Available	506	Open in IMG/M
3300031708\|Ga0310686_113259203	All Organisms → cellular organisms → Bacteria	2095	Open in IMG/M
3300031912\|Ga0306921_12436316	Not Available	545	Open in IMG/M
3300031947\|Ga0310909_11636059	Not Available	510	Open in IMG/M
3300032028\|Ga0316052_103700	Not Available	831	Open in IMG/M
3300032035\|Ga0310911_10170194	Not Available	1232	Open in IMG/M
3300032261\|Ga0306920_101189044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1102	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.50%
Host-Associated	Host-Associated	12.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.69%
Plants	Host-Associated → Plants	12.50%
Aquatic	Environmental → Aquatic	4.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Marine	Environmental → Aquatic → Marine	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Cave	Environmental → Terrestrial → Cave	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.38%
Loam	Environmental → Terrestrial → Soil → Loam	16.35%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032028	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_00265460	2070309004	Green-Waste Compost	TGTTANHRIGIDEGEGRSNVISVAPSAIGAGTEIGRATP
JGIcombinedJ26739_1009614012	3300002245	Forest Soil	ECPWICGRSASPTGCAFAHIPTGTTANHRIDIDEGEGRSNVMSVAPSAIAAGTEIGRATP
JGIcombinedJ26739_1011359591	3300002245	Forest Soil	TGGAFAPHIPTGTTANHRIDVDEGGGKSDVMTVALGAIGAGTEIGRATP*
Ga0055437_101390151	3300004009	Natural And Restored Wetlands	TGTTANHRIDIDEKANRSDAMTVAPGAIGAGIEIGRVTP*
Ga0070690_1007829171	3300005330	Switchgrass Rhizosphere	PWICGRSASPTGCAFAHIPTGTTANNRIDVDEEEDSSDVMTVAPGAIGAGTEIGRATP*
Ga0066388_1087222201	3300005332	Tropical Forest Soil	PTGCAFAHIPTGTTANHRIDVDEEDDRSDVMTVALRAIGAGSKLGRATP*
Ga0070671_1002414905	3300005355	Switchgrass Rhizosphere	ICGRSALPTGCAFAHIPTGTTANHRIDVDEAEDRSVAMTVAPGGTGAGTEIGRATP*
Ga0070671_1017771752	3300005355	Switchgrass Rhizosphere	CGRSASPTGCAFAHIPTGTTANQRIDIDEEEDRSDAMTVAASAIGAGTEIGRATP*
Ga0070673_1006043141	3300005364	Switchgrass Rhizosphere	GRSASPTGCAFAHIPTGTTANHRIDVDEEDDRSDAMTVAPRAIGADTEIGRATP*
Ga0070708_1018048532	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RSASPTGCAFAHIPTGTAANNSIDVDEGEGRSNVMSVAPGAIGAGTEIGRATP*
Ga0070699_1011954223	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ECRWICGRSASPTGCAFAHIPTGTTANHRIDIDQGEGRSSVMSVAPGAIGAGTEIGRATP
Ga0066699_108073692	3300005561	Soil	VDMWTIGSTFTHLPTGTTANHRINVDEEEHRSDAMTVATSAIGAGREIGRATP*
Ga0070702_1014275382	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AFAHIPTGTTANHRIDVDEEDDRSDAMTVAPRAIGADTEIGRATP*
Ga0070702_1014335721	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ASPTGCAFAHIPTGTTTNHRIDVDEEEDSSDVMTVAPSAIGAGTELGRATP*
Ga0066903_1061173001	3300005764	Tropical Forest Soil	PWICGRSASPTGCAFAHIPTGTAANHRIDIDEEKDESDAMTVAASAIGAGTEIGRATP*
Ga0081455_102049242	3300005937	Tabebuia Heterophylla Rhizosphere	LASPTGCAFAHIPTGTTTNYRIEVDEEEKSSEAMTVAPSAIGAGTEIGRVTP*
Ga0066651_100222081	3300006031	Soil	NHRIDVDEEDYRSDVVTVAPAAIGAGVKIGGVTP*
Ga0070712_1018115281	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AHIPTGTTANHRIDIDQGEGRSNVISVAPSAIGAGTEIGRTTP*
Ga0102924_12153163	3300007982	Iron-Sulfur Acid Spring	FAHIPTGTTANHRIDVDEGEGSSDAMTVAPDAIGAGTEISRATP*
Ga0099829_100884243	3300009038	Vadose Zone Soil	PTGATANHRIDIDEKERSSAMTVAPGAIGAGTEIGRAIP*
Ga0099830_112025611	3300009088	Vadose Zone Soil	PTGCAFAHIPTGATANHRIDIDEEERNSAMTVAPGAIGAGTEIGRATP*
Ga0099830_117409341	3300009088	Vadose Zone Soil	PTGCAFAHIPTGATANHRIDIDEEERNSAMTVAPGAIGAGTKIGRATP*
Ga0099828_107097242	3300009089	Vadose Zone Soil	STGATDNHRIDIYEEERNSAMTVAPGAIGAGTKIGRATP*
Ga0099828_108661671	3300009089	Vadose Zone Soil	CAFAHIPTGATANHRIDIDEEERNSAMTVAPGAIGAGTEIGRATP*
Ga0099828_114067212	3300009089	Vadose Zone Soil	SASPTGCAFAHIPTGATANHRVDIDEEEKSSAMTVAPGAIGAGTEIGRATP*
Ga0099827_100965013	3300009090	Vadose Zone Soil	CGRSASPTGCACAHIPTGTATNHRIDVDEEEDRSDAMTIATSAIGAGTEIGRATP*
Ga0099827_114490701	3300009090	Vadose Zone Soil	GCAFAHIPTGATANHRIDIDEEERNSAMTVAPGATGAGTEIGRATP*
Ga0105245_122465822	3300009098	Miscanthus Rhizosphere	GCAFAHIPTGTTANHRIDIDEGEDRSNVMSVAPSAIGAGTEIGRATP*
Ga0105247_103171341	3300009101	Switchgrass Rhizosphere	AHIPTGTTANNRIDVDEEEDSSDVMTVAPGAIGAGTEIGRATP*
Ga0099792_106416311	3300009143	Vadose Zone Soil	CGRSASPTGCAFAHIPTGTTANHRIDVDEEDYRSDVVTVAPAAIGAGVKIGGVTP*
Ga0099792_109465142	3300009143	Vadose Zone Soil	PWICGRSASPTGCAFAHIPTGTTANHRIDVDEAEGKSDVMTVAPSAIGAGTEIGRATP*
Ga0126384_115615791	3300010046	Tropical Forest Soil	TGTTANHRIDIDEGEGRSNVMSVATSEIAAGTEIGRATP*
Ga0127503_112072651	3300010154	Soil	AFAHIPTGTIANQRIAIDEGEGRSNVISVAPSAIGAGTEIGRATP*
Ga0126381_1028204602	3300010376	Tropical Forest Soil	PTGTTANHRIDVDEEEYRSNAMTVATSAIGAGTKLGEATP*
Ga0126381_1040793782	3300010376	Tropical Forest Soil	GRSALPTGCAFAHIPTGTTDNHRIDVDDEKDRRNAMILAPGAIGTRTEIGWVTP*
Ga0126381_1048625901	3300010376	Tropical Forest Soil	SPTGCAFAHIPTGTTANHRIDIDEGEGRSNVMSVATSAIAAGTEIGRATP*
Ga0136449_1018222182	3300010379	Peatlands Soil	ASPTGCAFAHIPTGTTANHRNDVDEKEERSDAMTVAPGAIGAGTETGRATP*
Ga0150983_103238211	3300011120	Forest Soil	RSASPTGCAFAHIPTGTTANHRIDVDEAEGKSDVMTALSAIGAGTEIGRATP*
Ga0137392_105330232	3300011269	Vadose Zone Soil	SPTGCAFSHIPTGATANHRIDIEEKERSSAMTVAPGAIGAGTEISRATP*
Ga0137392_106109491	3300011269	Vadose Zone Soil	ATANHRIDIDEKERSSAMTVAPGAIGAGTEIGRATP*
Ga0137391_100677734	3300011270	Vadose Zone Soil	DMWTIGCAFAHISTATTANQRIDIDEGEGRSDVMTVAPGAIGAGTEIGRATP*
Ga0137391_106923312	3300011270	Vadose Zone Soil	WICGRSASPTGCAFAHIPTGTTTNHRIDVDEEKDRSDAMTVATSAIGAGTEISRATP*
Ga0137393_100708855	3300011271	Vadose Zone Soil	TGATANHRIDIDEEERSSAMTVAPGAIGAGTEIGRATP*
Ga0137389_107865272	3300012096	Vadose Zone Soil	WICGRSASPTGCAFAHIPTGATANHRIDIDEEERSSAMTVAPGAIGAGTEIGRATP*
Ga0137374_102981044	3300012204	Vadose Zone Soil	HIPTDTTANHRIDVDEAEGKSDVMTVAPSAIGACTEIGWATP*
Ga0137362_111754831	3300012205	Vadose Zone Soil	GYAFDHIPTGTTAKHRVDVDKGEASSDVMTVAPGAIGAGTEIGRATP*
Ga0137381_102102081	3300012207	Vadose Zone Soil	ICGRSASPTGCAFAHIPTGATANHRIDIDEEERNSAMTVAPGAIGAGTEIGRATP*
Ga0137376_115423482	3300012208	Vadose Zone Soil	TGTTANHRTNVDEGYGRSDAITVAAGAIGADTKISRATP*
Ga0137379_104131763	3300012209	Vadose Zone Soil	GRSASPTGCAFAHIPTGTTTNHRIDVDEEKDRSDAMTVATSAIGAGTEIGRATP*
Ga0137378_105167591	3300012210	Vadose Zone Soil	AFAHIPTGATANHRIDIDEEERSSAMTVALSAIGAGTEIGRATP*
Ga0137377_115597252	3300012211	Vadose Zone Soil	CAFAHIPTGTTANHRTNVDEGYGRSDAITVAAGAIGADTKIGRATP*
Ga0137377_116127152	3300012211	Vadose Zone Soil	CAFAHIPTGTTANHRTNVDEGYGRSDAITVAAGAIGADTKISRATP*
Ga0137366_101425351	3300012354	Vadose Zone Soil	GGAFAHIPTGATANHRIDIDAEERSSAMTVAPGAIGAGTEIGWATP*
Ga0137384_111492931	3300012357	Vadose Zone Soil	AVAHIPTGATANHRIDIDEEERNSAMTVAPGAIGAGTEIGRATP*
Ga0137385_103673261	3300012359	Vadose Zone Soil	AECPWICGRSASPTGGAFAHIPTGATANHRIDIDEAERSSAMTLAPGAIGAGTEIGRATP
Ga0137385_109639231	3300012359	Vadose Zone Soil	ECPWICGRSASPTGGAFAHIPTGATANHRIDIDEEERSSAMTVAPGAIGAGTEIGRATP*
Ga0137360_109223461	3300012361	Vadose Zone Soil	TGTAANHRIDIDEGEGRRNVMSVAPSAIAAGTEIGRATP*
Ga0137361_106706213	3300012362	Vadose Zone Soil	AFAHIPTGTTTNHRIDVDEEKDRSDAMTVAPGAIGAGTEISRATP*
Ga0137390_103330103	3300012363	Vadose Zone Soil	ATANHRIDIDEEERNSAMTVAPGAIGAGTKIGRATP*
Ga0137390_106320361	3300012363	Vadose Zone Soil	ICGRSASPTGCAFAHIPTGTTTNHRIDVDEEKDRSDAMTVATSAIGAGTEISRATP*
Ga0137390_107918581	3300012363	Vadose Zone Soil	GTTLNSRIDINHSKGRTDVITVAPSAIGAGIKIGRATP*
Ga0137390_109393641	3300012363	Vadose Zone Soil	ICGRSASPTGCAFAHIPTGTTTNHRIDVDEEKDRSDAMTVAPGAIGAGTEISRATP*
Ga0150984_1046739281	3300012469	Avena Fatua Rhizosphere	HIPTGTTASNRIDVDEEEGSRDVMTVAPVAIGAGTEIGGVTP*
Ga0137398_101570211	3300012683	Vadose Zone Soil	PTGTTLNSRIDINHSKRRTDVITVAPSAIGAGIEIGRAIP*
Ga0137359_111716731	3300012923	Vadose Zone Soil	TGYAFDHIPTGTTAKHRVDVDKGEANSDVMTVAPGAIGAGTEIGRATP*
Ga0137407_108970362	3300012930	Vadose Zone Soil	CGRSASPTGCAFAHIPTGTTADHWIDVDEEEDRSDAMTVAPSAIGAGTEIGRATP*
Ga0157376_117092762	3300014969	Miscanthus Rhizosphere	PTGCAFAHIPTGTTDNHRIDVDEEDDRSDAMTVAPRAIGADTEIGRATP*
Ga0134072_100839861	3300015357	Grasslands Soil	AHITTGTTANHRIHVDEEEDRSDAMTVATSAIGAGTQIGRATP*
Ga0132256_1005217041	3300015372	Arabidopsis Rhizosphere	HIPTGTTTNHRIDIDEEKDRSDAMTVSPGPIGAGTEIGRATP*
Ga0132257_1035940731	3300015373	Arabidopsis Rhizosphere	AHIPTGTTANNRIDVDEEEDRSDVMTVAPGAIGAATEIGRATP*
Ga0132255_1014278481	3300015374	Arabidopsis Rhizosphere	RSASPSGYAFAHIPTGTAANHRIDIDEEEDRSDAMTVAASAIGAGTEIGRATP*
Ga0182032_115782161	3300016357	Soil	IPSGTTANQRIDIDEGEGRSKVISVTPSAIGTGTEIGRVTP
Ga0187825_101510824	3300017930	Freshwater Sediment	AHIPTGTTTSHRIDVDEEEDRSDAMTVAPGATGAGTEIGRATP
Ga0066662_111286972	3300018468	Grasslands Soil	CGRSASPTGCAFAHIPTGTTANHRIDVDEEDYRSDVVTVAPAAIGAGIKIGGVTP
Ga0066669_108621532	3300018482	Grasslands Soil	RSASPTGCAFAHIPTGATANHRVDIDEEEKSGAMTVAPGAIGAGTEIGRATP
Ga0210395_102574061	3300020582	Soil	PQPTGRAFAHIPPGTTANHRINGDEQEYRSNAMIIATSAIGAGTKLGRATP
Ga0210395_103389751	3300020582	Soil	HPPGTTANHRINGDEQEYRSNAMTIATSAIGAGTKLSRATP
Ga0210405_100888451	3300021171	Soil	SPTGCAFAHIPTGTPAYHGIDVDEGEGRSDVMTVAPSAIGAGTEIGRATP
Ga0210393_110215841	3300021401	Soil	RYSPDGYGTTANHRIDVDEEDDRSDVMTVAPRAIGVGTKLGRATP
Ga0210397_114368712	3300021403	Soil	HIPTGTTANHRIDIDEGEGRSDVMTVVSGATGAGTEIGRATP
Ga0210384_105109463	3300021432	Soil	SPTGCAFAHIPTGTPAYHRIDVDEGEGRSDVMIVVPSAIGAGTEIGRATP
Ga0187846_104794832	3300021476	Biofilm	TANHGIDIDERGGRSDAMTVAQSMIGADTEIGRATP
Ga0126371_110394451	3300021560	Tropical Forest Soil	AANHRSNVDEEEESSDAMTVAPGAIGAGTEIGRVTP
Ga0126371_137009652	3300021560	Tropical Forest Soil	LPFGCAFATSPTGATNHRIDSDDEDGKSDAVTVAPAAIGAGTEIDRATI
Ga0210073_10094653	3300025569	Natural And Restored Wetlands	PTGTTANHRIDIDEKANRSDAMTVAPGAIGAGIEIGRVTP
Ga0207644_105389622	3300025931	Switchgrass Rhizosphere	DCGRSASPTGCAFAHIPTGTTANQRIDIDEEEDRSDAMTVAASAIGAGTEIGRATP
Ga0207711_113498042	3300025941	Switchgrass Rhizosphere	RRTGYAFAHIPAGTTANHRIDVDEEEDRSDAMTVATSAIGAGRATP
Ga0209734_10076081	3300027535	Forest Soil	YGRSASPTGCAFAHIPTGTTANHRIDIDEGEGRSDVMTVAPAAIGAGTEIGRATP
Ga0209528_10432932	3300027610	Forest Soil	GRSASPTGCAFAHIPTGTTANHRIDIDQGKGRSNVMSVAPSAIAAGTEIGRATP
Ga0209106_10461031	3300027616	Forest Soil	RGWICGRSASPTGCAFAHIPTGTTANHRIDVDEAEGKSDVMTVAPSAIGAGTEIGRATP
Ga0209117_10471961	3300027645	Forest Soil	PNGCAFAHIPTGTTANHRIDVDEEKGRSDAMTVAPSAIGAGTEIGRATPYTKSR
Ga0209217_10352355	3300027651	Forest Soil	GCAFAHIPTGTTANHRIDIDEGEGRSNVISVAPSAIGAGTEIGRATP
Ga0209388_11079722	3300027655	Vadose Zone Soil	PTGTTANHRIDIDQGEGRSNVMNVAPGAIGAGTEIGRATP
Ga0208989_100453711	3300027738	Forest Soil	AFAHIPTGTTANHRIDVDQAEGKSDVMTVAPAAIGAGTEIGRATP
Ga0308189_103219672	3300031058	Soil	CAFAHIPTGATANHRIDVDEDDYRSDVVTVAPAAIRAGVKIGGVTP
Ga0170822_160934741	3300031122	Forest Soil	HIPTGTTANHRIDVDEAEGKSDLMTVAPSAIGAGTEIGRATP
Ga0170818_1026484101	3300031474	Forest Soil	PVSRCRIANHRIDVDEVSDVMTIVPGAIGAGTENGRATP
Ga0310686_1036213531	3300031708	Soil	PTCTTANHRIDVDEWEARSNVMTVAPGAIGAGTEIGRATP
Ga0310686_1132592034	3300031708	Soil	TGRAFAHIPTGTTTNHRIDINEAGGRSDAMTVAPGAIGAGTEIGRATP
Ga0306921_124363162	3300031912	Soil	TGCAFAHIPTGTTANHRMDVDEEERKRNVIALAPGAIGAETEIGRATP
Ga0310909_116360591	3300031947	Soil	SASPTGCAFAHIPTGTANHRIDIDEGEGRSNVMSVATSAIAAGTEIGRATP
Ga0316052_1037002	3300032028	Soil	LPTGCAFAHIPTGTTTNYRIEVDEEEHRSDAMTVATSAIGAGTEIGRATP
Ga0310911_101701941	3300032035	Soil	AFADIPTGTTANHRMDVDEEERKSNVITAAPGAIGAETEIGRATP
Ga0306920_1011890442	3300032261	Soil	RWICGRSTMPTGCAFAHIPTGTTANHRMDVDEEERKRNVIALAPGAIGAETEIGRATP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097756

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences