Metagenome / Metatranscriptome Family F097721

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097721
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	75 residues
Representative Sequence	MTAIPAEVVAAHRLVNQYHVIVRIEAGHYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Number of Associated Samples	77
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	13.46 %
% of genes near scaffold ends (potentially truncated)	40.38 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.154 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.731 % of family members)
Environment Ontology (ENVO)	Unclassified (50.962 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.923 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.67% β-sheet: 21.33% Coil/Unstructured: 64.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00140	Sigma70_r1_2	6.73
PF02586	SRAP	2.88
PF01432	Peptidase_M3	1.92
PF00480	ROK	1.92
PF00246	Peptidase_M14	0.96
PF04542	Sigma70_r2	0.96
PF16124	RecQ_Zn_bind	0.96
PF14020	DUF4236	0.96
PF04679	DNA_ligase_A_C	0.96
PF01526	DDE_Tnp_Tn3	0.96
PF04545	Sigma70_r4	0.96
PF03795	YCII	0.96
PF01609	DDE_Tnp_1	0.96
PF07045	DUF1330	0.96
PF00011	HSP20	0.96
PF03050	DDE_Tnp_IS66	0.96
PF13531	SBP_bac_11	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	7.69
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	3.85
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	2.88
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	1.92
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	1.92
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.96
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.96
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.96
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.96
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.96
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.96
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.96
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.96
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.96
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.96
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
All Organisms	root	All Organisms	28.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
cellular organisms	root	All Organisms → cellular organisms	28.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.77 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.96 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.92 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.96 %
Alphaproteobacteria bacterium 64-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 64-6	0.96 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.96 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.92 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.96 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.96 %
Alphaproteobacteria bacterium 64-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 64-6	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.96 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.96 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.96 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.96 %
Alphaproteobacteria bacterium 64-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 64-6	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.92 %
unclassified Clostridium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium	0.96 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.96 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.96 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.96 %
Alphaproteobacteria bacterium 64-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 64-6	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.15 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.92 %
Clostridium sp. C105KSO13	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. C105KSO13	0.96 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.96 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.96 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.96 %
Alphaproteobacteria bacterium 64-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 64-6	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig38982	Not Available	967	Open in IMG/M
2170459005\|F1BAP7Q01CZXQ7	Not Available	511	Open in IMG/M
2170459008\|GA8OVOZ02G4MQS	Not Available	530	Open in IMG/M
2170459009\|GA8DASG01EEVMP	Not Available	519	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100515968	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300003218\|JGI26339J46600_10042207	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1248	Open in IMG/M
3300003219\|JGI26341J46601_10076841	Not Available	1002	Open in IMG/M
3300003219\|JGI26341J46601_10207978	Not Available	530	Open in IMG/M
3300003368\|JGI26340J50214_10012804	All Organisms → cellular organisms → Bacteria	2639	Open in IMG/M
3300003505\|JGIcombinedJ51221_10091323	Not Available	1204	Open in IMG/M
3300004152\|Ga0062386_101042464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	678	Open in IMG/M
3300005332\|Ga0066388_100357004	Not Available	2108	Open in IMG/M
3300005437\|Ga0070710_11233397	Not Available	554	Open in IMG/M
3300005468\|Ga0070707_101626602	Not Available	613	Open in IMG/M
3300005536\|Ga0070697_101584208	Not Available	586	Open in IMG/M
3300005602\|Ga0070762_10091846	Not Available	1743	Open in IMG/M
3300005602\|Ga0070762_10587866	Not Available	738	Open in IMG/M
3300005610\|Ga0070763_10059119	Not Available	1844	Open in IMG/M
3300005921\|Ga0070766_11179167	Not Available	530	Open in IMG/M
3300006050\|Ga0075028_100162700	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300006050\|Ga0075028_100517304	Not Available	699	Open in IMG/M
3300006052\|Ga0075029_100505180	Not Available	798	Open in IMG/M
3300006059\|Ga0075017_100306178	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300006059\|Ga0075017_100346327	Not Available	1106	Open in IMG/M
3300006059\|Ga0075017_101082901	Not Available	626	Open in IMG/M
3300006162\|Ga0075030_101358515	Not Available	557	Open in IMG/M
3300006176\|Ga0070765_100339153	Not Available	1395	Open in IMG/M
3300006893\|Ga0073928_10539763	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300009520\|Ga0116214_1426780	Not Available	519	Open in IMG/M
3300010154\|Ga0127503_10011403	Not Available	618	Open in IMG/M
3300010339\|Ga0074046_10889761	Not Available	518	Open in IMG/M
3300010341\|Ga0074045_10464374	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300010341\|Ga0074045_10509064	Not Available	773	Open in IMG/M
3300010341\|Ga0074045_10715700	Not Available	635	Open in IMG/M
3300010341\|Ga0074045_10749686	Not Available	618	Open in IMG/M
3300010343\|Ga0074044_10023449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 64-6	4422	Open in IMG/M
3300010343\|Ga0074044_10399045	Not Available	901	Open in IMG/M
3300010343\|Ga0074044_10639222	Not Available	694	Open in IMG/M
3300012202\|Ga0137363_11605460	Not Available	542	Open in IMG/M
3300012361\|Ga0137360_10744187	Not Available	843	Open in IMG/M
3300012923\|Ga0137359_11498979	Not Available	562	Open in IMG/M
3300012961\|Ga0164302_11124168	Not Available	622	Open in IMG/M
3300013297\|Ga0157378_10564163	Not Available	1145	Open in IMG/M
3300015371\|Ga0132258_13045628	Not Available	1160	Open in IMG/M
3300020579\|Ga0210407_10161205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1732	Open in IMG/M
3300020579\|Ga0210407_10300002	Not Available	1254	Open in IMG/M
3300020580\|Ga0210403_10992732	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300020580\|Ga0210403_11175644	Not Available	592	Open in IMG/M
3300020581\|Ga0210399_10036452	All Organisms → cellular organisms → Bacteria	3937	Open in IMG/M
3300020581\|Ga0210399_10072416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2791	Open in IMG/M
3300020581\|Ga0210399_10141041	Not Available	1989	Open in IMG/M
3300020581\|Ga0210399_10947077	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300020581\|Ga0210399_11439597	Not Available	537	Open in IMG/M
3300020582\|Ga0210395_10041684	All Organisms → cellular organisms → Bacteria	3361	Open in IMG/M
3300020582\|Ga0210395_10222346	Not Available	1417	Open in IMG/M
3300020583\|Ga0210401_10510635	Not Available	1064	Open in IMG/M
3300021046\|Ga0215015_10821511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. C105KSO13	797	Open in IMG/M
3300021088\|Ga0210404_10515288	Not Available	676	Open in IMG/M
3300021168\|Ga0210406_10898298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	667	Open in IMG/M
3300021170\|Ga0210400_10500961	Not Available	1003	Open in IMG/M
3300021171\|Ga0210405_10404817	Not Available	1074	Open in IMG/M
3300021171\|Ga0210405_11124248	Not Available	586	Open in IMG/M
3300021178\|Ga0210408_10704940	Not Available	795	Open in IMG/M
3300021181\|Ga0210388_10525430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1038	Open in IMG/M
3300021401\|Ga0210393_10313154	All Organisms → cellular organisms → Bacteria → Acidobacteria	1276	Open in IMG/M
3300021401\|Ga0210393_10530059	Not Available	962	Open in IMG/M
3300021401\|Ga0210393_10577249	Not Available	918	Open in IMG/M
3300021404\|Ga0210389_10186148	Not Available	1617	Open in IMG/M
3300021404\|Ga0210389_10877184	Not Available	699	Open in IMG/M
3300021405\|Ga0210387_11096304	Not Available	694	Open in IMG/M
3300021406\|Ga0210386_10044870	All Organisms → cellular organisms → Bacteria	3496	Open in IMG/M
3300021407\|Ga0210383_10326552	Not Available	1321	Open in IMG/M
3300021420\|Ga0210394_10165657	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300021432\|Ga0210384_10526804	Not Available	1063	Open in IMG/M
3300021433\|Ga0210391_11577351	Not Available	502	Open in IMG/M
3300021475\|Ga0210392_10108732	Not Available	1837	Open in IMG/M
3300021559\|Ga0210409_11221853	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300024225\|Ga0224572_1090059	Not Available	566	Open in IMG/M
3300024271\|Ga0224564_1103658	Not Available	579	Open in IMG/M
3300027073\|Ga0208366_1025975	Not Available	649	Open in IMG/M
3300027371\|Ga0209418_1087093	Not Available	561	Open in IMG/M
3300027576\|Ga0209003_1087119	Not Available	584	Open in IMG/M
3300027603\|Ga0209331_1034539	Not Available	1297	Open in IMG/M
3300027667\|Ga0209009_1070680	Not Available	878	Open in IMG/M
3300027698\|Ga0209446_1118996	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300027812\|Ga0209656_10003006	All Organisms → cellular organisms → Bacteria	10931	Open in IMG/M
3300027812\|Ga0209656_10013238	All Organisms → cellular organisms → Bacteria → Proteobacteria	5160	Open in IMG/M
3300027812\|Ga0209656_10024965	All Organisms → cellular organisms → Bacteria	3611	Open in IMG/M
3300027812\|Ga0209656_10356314	Not Available	664	Open in IMG/M
3300027812\|Ga0209656_10520108	Not Available	518	Open in IMG/M
3300027825\|Ga0209039_10054178	Not Available	1816	Open in IMG/M
3300027889\|Ga0209380_10363489	Not Available	850	Open in IMG/M
3300027898\|Ga0209067_10719887	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300027911\|Ga0209698_10478458	Not Available	966	Open in IMG/M
3300028047\|Ga0209526_10213300	Not Available	1333	Open in IMG/M
3300030923\|Ga0138296_1621293	Not Available	648	Open in IMG/M
3300031231\|Ga0170824_125008378	Not Available	790	Open in IMG/M
3300031708\|Ga0310686_103664931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1820	Open in IMG/M
3300031708\|Ga0310686_108268376	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300031708\|Ga0310686_110275017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2184	Open in IMG/M
3300031718\|Ga0307474_11479284	Not Available	535	Open in IMG/M
3300032160\|Ga0311301_10379880	Not Available	2181	Open in IMG/M
3300032892\|Ga0335081_12108226	Not Available	597	Open in IMG/M
3300032955\|Ga0335076_10253944	Not Available	1652	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.15%
Host-Associated	Host-Associated	2.88%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.04%
Aquatic	Environmental → Aquatic	22.12%
Plants	Host-Associated → Plants	2.88%
Modeled	Engineered → Modeled	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.04%
Freshwater	Environmental → Aquatic → Freshwater	12.50%
Sediment	Environmental → Aquatic → Sediment	8.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.08%
Loam	Environmental → Terrestrial → Soil → Loam	16.35%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.58%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.65%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459008	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0982.00002930	2166559005	Simulated	MTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ
E41_12536720	2170459005	Grass Soil	MTPIPAEVVAAHRLLDQYHVIVRIGAANYRGSFATLVFGDNKPLIGASHQGRLDLIYLQHPGLQAGQEFPLWTIQ
F48_07763580	2170459008	Grass Soil	MTSIPAEVVAAHRLVNQDHVIIRIEARNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRF
F47_04277970	2170459009	Grass Soil	STVRANRVRVRNPQSLVYAARIIFFVRPENPVTSIPAEVVAAHKLVDQYHVIVRIEVRNYRGSFASLIFGDNKPLIGACHDRRLDLIYL
INPhiseqgaiiFebDRAFT_1005159682	3300000364	Soil	MTSIPAEVVAVDRLVNQYHVIVRIEAKNYRGSFATLVFGENKPLIGACYNRRLDLIYLQDPDLYTGQQFPLWSIH*
JGI26339J46600_100422072	3300003218	Bog Forest Soil	MTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHERRVDLIYLQDPGLCTGQRFPLWSIQ*
JGI26341J46601_100768412	3300003219	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGRYGGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSI
JGI26341J46601_102079782	3300003219	Bog Forest Soil	TSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGFCTGQRFPLWSIQ*
JGI26340J50214_100128041	3300003368	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRTAHYRGSFATLAFGENKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWS
JGIcombinedJ51221_100913232	3300003505	Forest Soil	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQQFPLWSIQ*
Ga0062386_1010424642	3300004152	Bog Forest Soil	LVYAARIIFFVRPESPVTSIPAEVVAAHKLVDQYHVIVRIEARNYRGSFASLIFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ*
Ga0066388_1003570044	3300005332	Tropical Forest Soil	MTPIPAVVVVAHRLVNQYHVIVRIGVANYRGTFATLAFGENKPLIGACLDRRLDLIYLQHPGLQAGQQFPLWTIE*
Ga0070710_112333971	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTAIPAEVVAAHRLVNQYHVIVRIEAGRYRGSFDTLVFGDNKPLIGAYRDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0070707_1016266021	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKTLPAVIVATHRLVNQYHVIARIGAANYRGSFATLVFGDNKPFIGACHDRRLDLIYLQHPELQPGQQFPLWT
Ga0070697_1015842082	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTPIPAEVVAAHRLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGFCTGQRFPLWSIQ*
Ga0070762_100918462	3300005602	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAERYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0070762_105878661	3300005602	Soil	MTPIPAVVVAAHRLVNQYHVIVRIGVANYQGSFATLAFGENKPLIGACRDRRLDLIYLQHPGLQAGQQFPLWTIQ*
Ga0070763_100591191	3300005610	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGRYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0070766_111791671	3300005921	Soil	AHRLVNQYHVIVRIGAARYRGSFGTLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0075028_1001627003	3300006050	Watersheds	LAPKVTRMTSIPAEVVAAHRLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI*
Ga0075028_1005173042	3300006050	Watersheds	MTAIPAEVVAAHRLVNQYHVIVRIGAGSYRGSFATLVFGDNKPLIGARYDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0075029_1005051801	3300006052	Watersheds	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFANLVFGDNKPLIGACHERRVDLIYLQDPGLCTG
Ga0075017_1003061783	3300006059	Watersheds	MTAIPAEVVAAHRLVNQYHVIVRIGAGRYGGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0075017_1003463273	3300006059	Watersheds	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ*
Ga0075017_1010829011	3300006059	Watersheds	AIHQLRRRSAQKPQLSPAEVVAAHKLVNQYHVIVRIEAKNYRGSFASLVFGENKPLIGACHDRRLDLIYLQHPGLQAGQQFPLWTIQ*
Ga0075030_1013585151	3300006162	Watersheds	MTSIPAEVVAVDRLVNQYHVIVRIEAKNYRGSFATLVFGENKPLIGACYNRRLDLIYLQDPDLCTGQRFPLWSIH*
Ga0070765_1003391532	3300006176	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEVRNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI*
Ga0073928_105397632	3300006893	Iron-Sulfur Acid Spring	MTSIPAEVVAAHKLVNQYHVIVRIEAGKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ*
Ga0116214_14267801	3300009520	Peatlands Soil	WARFFAPKVTRMTSIPAEVVAAHKLVNQYHVIVRIEAGKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ*
Ga0127503_100114032	3300010154	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAAHYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQGFPLWSIQ*
Ga0074046_108897611	3300010339	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGHYRGSFATLAFGENKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSI
Ga0074045_104643741	3300010341	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGHYRGSFATLAFGENKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0074045_105090641	3300010341	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRTAHYRGSFATLAFGENKPLIGACHDRRVDLIYLQDPGLCA
Ga0074045_107157001	3300010341	Bog Forest Soil	MTAVPAEVVAARRLVNQYHVIVRIGAAHYRGSFATLVFGDDKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0074045_107496861	3300010341	Bog Forest Soil	MTSIPAEVVAVDRLVNQYHVIVRIEAKNYRGSFATLVFGENKPLIGACYNRRLDLIYLQDPDLCTGQRFPLWSNH*
Ga0074044_100234496	3300010343	Bog Forest Soil	MTAIPAEVVAAHRLLNQYHVIVRIGAGHYSGSFATLVFGDDKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0074044_103990452	3300010343	Bog Forest Soil	MTSIPAEVVAAHRLVNQYHVIVRIEARKYRGSFATLVFGDKKPLIGACHDRRVDLIYLQDPGFCTGQRFPLWSIQ*
Ga0074044_106392221	3300010343	Bog Forest Soil	AHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHERRVDLIYLQDPGLCTGQRFPLWSIQ*
Ga0137363_116054601	3300012202	Vadose Zone Soil	MTAIPAEVVAAHRLVNQYHVIVRIEAGHYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQQFPLWSIQ*
Ga0137360_107441872	3300012361	Vadose Zone Soil	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACYDRRVDLIYLQDPGLCAGQRFPLWSI*
Ga0137359_114989791	3300012923	Vadose Zone Soil	MTKIPAVVIAAHELAGHQYHVIVRIGVAKYRGSFAALGFGENKPITGACHDRQLDLLYPQDPELYTGQKSPLWST*
Ga0164302_111241681	3300012961	Soil	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ*
Ga0157378_105641631	3300013297	Miscanthus Rhizosphere	MTKIPAVVIAAHELAGHQYHVVVRIGVAKYRGSFATLAFGENKPITGACHDHQLDLLYPQDPELYTGQQFPLWSA*
Ga0132258_130456282	3300015371	Arabidopsis Rhizosphere	MTAIPAEVVAANRLVNQYHVIVRIGVANYRGSFDTLVFGDNKPLIGACHDRRLDLIYLQHPGLHAGQEFPL*
Ga0210407_101612052	3300020579	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGGYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRLPLWSIQ
Ga0210407_103000021	3300020579	Soil	MTAIPAEVVPAHRLVNQYHVIVRIGAGRYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAG
Ga0210403_109927322	3300020580	Soil	MTSIPAEVVASHKLVNQYHVIVRIEAGKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQQFPLW
Ga0210403_111756441	3300020580	Soil	MTAIPAEVVAAHRLVNQYHVIVHIGAYRGSFASLIFGDNKPLIGACHDRRLDLIYLQHPGFQAGQEFPLWTIQ
Ga0210399_100364525	3300020581	Soil	MTSIPAEVVASHKLVNQYHVIVRIEAGKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQQFPLWSIQ
Ga0210399_100724161	3300020581	Soil	PMTAIPAEVVAADKLVNQYHVIVRIGAANYRGSYATLVFGDNKPLIGACHERRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0210399_101410412	3300020581	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEVRNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210399_109470772	3300020581	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGGYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRLPLWSIQSPDRR
Ga0210399_114395972	3300020581	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGRYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQGFPLWSIQ
Ga0210395_100416845	3300020582	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210395_102223462	3300020582	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGSYRGSFATLVFGDNKPLIGARYDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0210401_105106353	3300020583	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEVRNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQ
Ga0215015_108215111	3300021046	Soil	MTSIPAEVVAVDRLLNQYHVIVRIEAKHYRGSFASLAFGENKPLIGACYNRRLDLIYLQDPDLYTGQQFPLWSIH
Ga0210404_105152881	3300021088	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGAWHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210406_108982981	3300021168	Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGGYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRLPLWSIH
Ga0210400_105009611	3300021170	Soil	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210405_104048172	3300021171	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEVRNYRGSFATLVFGDNKPLLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210405_111242481	3300021171	Soil	MTAIPAEVVAADKLVNQYHVIVRIGAANYRGSYATLVFGDNKPLIGACHERRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0210408_107049401	3300021178	Soil	MTAIPAEVVAAHRLVNQYHVIVRIEAGHYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0210388_105254302	3300021181	Soil	MTAIPAEVVATHMLVNQYHVIVRIGAGGYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRLPLWSIQ
Ga0210393_103131543	3300021401	Soil	DPRRRNQTRHQMTAIPAEVVAAHRLVNQYHVIVRIGAGSYRGSFATLVFGDNKPLIGARYDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0210393_105300592	3300021401	Soil	MTAIPAEVVAAHRLVNQYHVIVHIGAYRGSFASLIFGDNKPLIGACHDRRLDLIYLQDPGLCAGQGFPLWSIQ
Ga0210393_105772492	3300021401	Soil	MTAIPAEVVPAHRLVNQYHVIVRIGAGRYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0210389_101861483	3300021404	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGAWHDRRVDLIYLQD
Ga0210389_108771842	3300021404	Soil	RRVSSPAKSDPESTNMTAIPAEVVSAHRLLDQYHVIVRIGHYQGSFATLVFGDNKPFIGACHESRVDLIYLHDPGLCAGQGFPLWSIQ
Ga0210387_110963041	3300021405	Soil	RRVPSPAKSDPESTNMTAIPAEVVSAHRLLDQYHVIVRIGHYQGSFATLVFGDNKPFIGACHESRVDLIYLHDPGLCAGQGFPLWSIQ
Ga0210386_100448703	3300021406	Soil	MGEANSIGREFLAPKVTRMTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210383_103265521	3300021407	Soil	MTAIPAEVVAAHRLVNQYQVIVRIGAGSYRGSFATLVFEDNKPLIGARYDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0210394_101656573	3300021420	Soil	MTSIPAEVVASHKLVNQYHVIVRIEAGKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210384_105268042	3300021432	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGFCTGQRFPLWSIQ
Ga0210391_115773512	3300021433	Soil	LAPKVTRMTSIPAEVVAAHRLVNQYHVIIRIEVRNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0210392_101087321	3300021475	Soil	MTSIPAEVVAAHRLVNQYHVIIRIEVRNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIY
Ga0210409_112218531	3300021559	Soil	MTSIPAEVVAAHKLLNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQ
Ga0224572_10900591	3300024225	Rhizosphere	MHMTPIPAVVVATHRLVNQYHVIVRIGAANYRGSFATLVFGENKPLIGACHDRRLDLIYLQHPGLQAGQQFPLWTVQ
Ga0224564_11036582	3300024271	Soil	PHRLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHERRVDLIYLQDPGFSTGQRFPLWSIQ
Ga0208366_10259751	3300027073	Forest Soil	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ
Ga0209418_10870931	3300027371	Forest Soil	PAEVVSAHRLLNQYHVIVRIGAARYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0209003_10871191	3300027576	Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAAHYRGCFATLVFGDEPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ
Ga0209331_10345392	3300027603	Forest Soil	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQQFPLWSIQ
Ga0209009_10706801	3300027667	Forest Soil	MTSIPAEVVAAHKLVNQYHVIVRIEAGKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ
Ga0209446_11189961	3300027698	Bog Forest Soil	MTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHERRVDLIYLQDPGLCTGQRFPLWSIQ
Ga0209656_1000300614	3300027812	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRTAHYRGSFATLAFGENKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0209656_100132385	3300027812	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAAHYRGSFATLVFGDDKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0209656_100249651	3300027812	Bog Forest Soil	HRLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGFCTGQRFPLWSIQ
Ga0209656_103563142	3300027812	Bog Forest Soil	MTSIPAEVVAAHKLVNQYHVIVRIEATKYRGSFATLVFGDNKPLIGACHERRVDLIYLQDPGLC
Ga0209656_105201081	3300027812	Bog Forest Soil	MTAVPAEVVAARRLVNQYHVIVRIGAAHYRGSFATLVFGDDKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWS
Ga0209039_100541782	3300027825	Bog Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGRYGGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0209380_103634891	3300027889	Soil	MTSIPAEVVAAHKLVNQYHVIVRIEASKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ
Ga0209067_107198871	3300027898	Watersheds	YGRSWFNWARLLASKVTRMTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFANLVFGDNKPLIGACHERRVDLIYLQDPGLCTGQRFPLWSIQ
Ga0209698_104784581	3300027911	Watersheds	MTSIPAEVVAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGFCTGQRFPLWSIQ
Ga0209526_102133002	3300028047	Forest Soil	MTSIPAEVVASHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQQFPLWSIQ
Ga0138296_16212931	3300030923	Soil	RMTSIPAEVVAAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSI
Ga0170824_1250083781	3300031231	Forest Soil	MTSIPAEVVSAHRLVNQYHVIIRIEARNYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQ
Ga0310686_1036649312	3300031708	Soil	VAAHKLVNQYHVIVRIEARKYRGSFATLVFGDNKPLIGACHERRVDLIYLQDPGFSTGQRFPLWSIQ
Ga0310686_1082683764	3300031708	Soil	MTPIPAVVVATHRLVNQYHVIVRIGAANYRGSFATLVFGDNKPLIGACHDRRLDLIYLQHPGLQAGQQFPLWTVQ
Ga0310686_1102750171	3300031708	Soil	MTPIPAVVVAAHRLVNQYHVIVRIGVANYRGSFATLAFGENKPLIGACHDRRIDLIYLQHPGLQVGQQFPLWTIQ
Ga0307474_114792842	3300031718	Hardwood Forest Soil	MTAIPAEVVAAHRLVNQYHVIVRIGAGHYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFLLWS
Ga0311301_103798803	3300032160	Peatlands Soil	WARFFAPKVTRMTSIPAEVVAAHKLVNQYHVIVRIEAGKYRGSFATLVFGDNKPLIGACHDRRVDLIYLQDPGLCTGQRFPLWSIQ
Ga0335081_121082262	3300032892	Soil	MTAISADVVSVHRLLSQYHVIVRIGAYRGSFDTLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRF
Ga0335076_102539441	3300032955	Soil	MTAISADVVSVHRLLSQYHVIVRIGAYRGSFDTLVFGDNKPLIGACHDRRVDLIYLQDPGLCAGQRFPLWSIQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097721

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences