Metagenome / Metatranscriptome Family F097719

Overview

Basic Information

• Family ID: F097719
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 49 residues
• Representative Sequence: MKTNWPALRHGCLILASMALATSPVLAQAQEPAGATATASVISSVAITQA
• Number of Associated Samples: 97
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 57.69 %
• % of genes from short scaffolds (< 2000 bps): 51.92 %
• Associated GOLD sequencing projects: 94
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (58.654 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.885 % of family members)
• Environment Ontology (ENVO): Unclassified (32.692 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (56.731 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 48.72%
  β-sheet: 0.00%
  Coil/Unstructured: 51.28%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04350	PilO	25.96
PF04351	PilP	13.46
PF05137	PilN	3.85
PF11104	PilM_2	3.85
PF03054	tRNA_Me_trans	0.96
PF08241	Methyltransf_11	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3167	Type IV pilus assembly protein PilO	Cell motility [N]	51.92
COG3168	Type IV pilus assembly protein PilP	Cell motility [N]	26.92
COG3166	Type IV pilus assembly protein PilN	Cell motility [N]	7.69
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.65 %
Unclassified	root	N/A	41.35 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.65 %
Unclassified	root	N/A	41.35 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.65 %
Unclassified	root	N/A	41.35 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	52.88 %
Unclassified	root	N/A	41.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003505|JGIcombinedJ51221_10416775	All Organisms → cellular organisms → Bacteria	545
3300004080|Ga0062385_10579778	All Organisms → cellular organisms → Bacteria → Acidobacteria	706
3300004104|Ga0058891_1588382	All Organisms → cellular organisms → Bacteria → Acidobacteria	590
3300004633|Ga0066395_11030917	All Organisms → cellular organisms → Bacteria → Acidobacteria	503
3300005598|Ga0066706_10827560	All Organisms → cellular organisms → Bacteria → Proteobacteria	728
3300005602|Ga0070762_10460152	All Organisms → cellular organisms → Bacteria → Acidobacteria	829
3300006047|Ga0075024_100066176	All Organisms → cellular organisms → Bacteria → Acidobacteria	1533
3300006176|Ga0070765_100402595	All Organisms → cellular organisms → Bacteria → Acidobacteria	1278
3300006800|Ga0066660_10191538	All Organisms → cellular organisms → Bacteria → Acidobacteria	1552
3300006954|Ga0079219_10832511	All Organisms → cellular organisms → Bacteria → Acidobacteria	732
3300010046|Ga0126384_12402205	All Organisms → cellular organisms → Bacteria → Acidobacteria	510
3300011269|Ga0137392_10079903	All Organisms → cellular organisms → Bacteria → Acidobacteria	2536
3300011270|Ga0137391_10633575	All Organisms → cellular organisms → Bacteria → Acidobacteria	894
3300012096|Ga0137389_11263968	All Organisms → cellular organisms → Bacteria → Acidobacteria	631
3300012189|Ga0137388_11450766	All Organisms → cellular organisms → Bacteria → Acidobacteria	624
3300012205|Ga0137362_10887522	All Organisms → cellular organisms → Bacteria → Acidobacteria	762
3300012357|Ga0137384_11489296	All Organisms → cellular organisms → Bacteria → Acidobacteria	526
3300012361|Ga0137360_10102221	All Organisms → cellular organisms → Bacteria → Acidobacteria	2195
3300012363|Ga0137390_10605074	All Organisms → cellular organisms → Bacteria → Acidobacteria	1063
3300012922|Ga0137394_11522185	All Organisms → cellular organisms → Bacteria → Acidobacteria	527
3300012927|Ga0137416_10399720	All Organisms → cellular organisms → Bacteria	1164
3300014166|Ga0134079_10477677	All Organisms → cellular organisms → Bacteria → Acidobacteria	596
3300015054|Ga0137420_1000415	All Organisms → cellular organisms → Bacteria → Acidobacteria	708
3300017927|Ga0187824_10246801	All Organisms → cellular organisms → Bacteria → Acidobacteria	619
3300017933|Ga0187801_10360723	All Organisms → cellular organisms → Bacteria → Acidobacteria	599
3300018060|Ga0187765_11080487	All Organisms → cellular organisms → Bacteria → Acidobacteria	555
3300020006|Ga0193735_1131704	All Organisms → cellular organisms → Bacteria → Acidobacteria	669
3300020580|Ga0210403_11267663	All Organisms → cellular organisms → Bacteria → Acidobacteria	564
3300020581|Ga0210399_10569372	All Organisms → cellular organisms → Bacteria → Acidobacteria	938
3300021088|Ga0210404_10036701	All Organisms → cellular organisms → Bacteria → Acidobacteria	2232
3300021088|Ga0210404_10278101	All Organisms → cellular organisms → Bacteria → Acidobacteria	916
3300021170|Ga0210400_10886200	All Organisms → cellular organisms → Bacteria → Acidobacteria	729
3300021178|Ga0210408_10189326	All Organisms → cellular organisms → Bacteria → Acidobacteria	1635
3300021420|Ga0210394_10265411	All Organisms → cellular organisms → Bacteria → Acidobacteria	1503
3300022508|Ga0222728_1065426	All Organisms → cellular organisms → Bacteria → Acidobacteria	637
3300022523|Ga0242663_1013831	All Organisms → cellular organisms → Bacteria → Acidobacteria	1129
3300022532|Ga0242655_10008336	All Organisms → cellular organisms → Bacteria → Acidobacteria	1899
3300022873|Ga0224550_1021394	All Organisms → cellular organisms → Bacteria → Acidobacteria	914
3300024227|Ga0228598_1042005	All Organisms → cellular organisms → Bacteria → Acidobacteria	903
3300024330|Ga0137417_1488727	All Organisms → cellular organisms → Bacteria → Acidobacteria	2486
3300025898|Ga0207692_10582306	All Organisms → cellular organisms → Bacteria → Acidobacteria	718
3300025906|Ga0207699_10032243	All Organisms → cellular organisms → Bacteria	2951
3300026298|Ga0209236_1238282	All Organisms → cellular organisms → Bacteria → Acidobacteria	611
3300026328|Ga0209802_1002179	All Organisms → cellular organisms → Bacteria → Acidobacteria	13840
3300026475|Ga0257147_1025415	All Organisms → cellular organisms → Bacteria → Acidobacteria	840
3300026481|Ga0257155_1031301	All Organisms → cellular organisms → Bacteria → Acidobacteria	794
3300026542|Ga0209805_1080525	All Organisms → cellular organisms → Bacteria → Acidobacteria	1574
3300027745|Ga0209908_10049969	All Organisms → cellular organisms → Bacteria → Acidobacteria	921
3300027829|Ga0209773_10273152	All Organisms → cellular organisms → Bacteria → Acidobacteria	706
3300027846|Ga0209180_10186043	All Organisms → cellular organisms → Bacteria → Acidobacteria	1198
3300028773|Ga0302234_10275215	All Organisms → cellular organisms → Bacteria → Acidobacteria	723
3300028879|Ga0302229_10240860	All Organisms → cellular organisms → Bacteria → Acidobacteria	821
3300028906|Ga0308309_10741873	All Organisms → cellular organisms → Bacteria → Acidobacteria	853
3300028906|Ga0308309_10768179	All Organisms → cellular organisms → Bacteria → Acidobacteria	837
3300029636|Ga0222749_10099242	All Organisms → cellular organisms → Bacteria → Acidobacteria	1365
3300031090|Ga0265760_10034947	All Organisms → cellular organisms → Bacteria → Acidobacteria	1487
3300031708|Ga0310686_108345975	All Organisms → cellular organisms → Bacteria → Acidobacteria	1578
3300031754|Ga0307475_10532780	All Organisms → cellular organisms → Bacteria → Acidobacteria	942
3300032120|Ga0316053_102033	All Organisms → cellular organisms → Bacteria	1120
3300032174|Ga0307470_11702248	All Organisms → cellular organisms → Bacteria → Acidobacteria	531
3300032783|Ga0335079_10004255	All Organisms → cellular organisms → Bacteria	16459

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.04%
Host-Associated	Host-Associated	0.96%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.27%
Aquatic	Environmental → Aquatic	5.77%
Plants	Host-Associated → Plants	0.96%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.38%
Freshwater	Environmental → Aquatic → Freshwater	3.85%
Peat	Environmental → Terrestrial → Peat	2.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Sediment	Environmental → Aquatic → Sediment	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.04%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.58%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.96%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental
3300010857	Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022557	Paint Pots_combined assembly	Environmental
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental
3300032120	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)	Environmental
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12673J13574_10114141	3300001167	Forest Soil	MKTNWPALRHGYLILASMALASSPVLAQTQAPGGATATAAVISSVA
JGIcombinedJ51221_104167752	3300003505	Forest Soil	MKTNWPALRHGCLILASMALATSPVLAQAQEPAGATATASVISSVAITQA
Ga0062385_105797782	3300004080	Bog Forest Soil	MKTTRPALRYGCLILASMALALSPALAQTPEPAGATATASIISSVAITQ
Ga0058891_15883822	3300004104	Forest Soil	MKTNWQALRRGCLILAGVALGGIPALAQTQEPAGATATASVISSVAIT
Ga0058897_100485505	3300004139	Forest Soil	MKTNWPALRHGCLILASMALATSPALAQTQEPSGAVTNTAVISSVA
Ga0066395_110309171	3300004633	Tropical Forest Soil	MITNWPALRNGCLILASVAFGSLPTLAQTQEPAGPSATASVISSVAI
Ga0066811_10234651	3300005185	Soil	MKTNWPAFRGGFLILTSAVLGASPMLAQTQEPAGATATSAVISSVAITQ
Ga0070708_1000155538	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKTNWPALRHGCLILVIIAVAASPALAQTQEPSGTSTTGAVISSV
Ga0070731_108962802	3300005538	Surface Soil	MKTNWPAFRCGCLMLSSVVLGASPILAQAQEPAGATATSAVISSVAITQA
Ga0066701_100984494	3300005552	Soil	MKTNWPALRHGYLILASVALTTSPTLAQTPAGATA
Ga0066699_100792044	3300005561	Soil	MKTNWPALRHGYVILASMALANSSVLAQTPAGRAAAVISSVAITQA
Ga0066706_108275601	3300005598	Soil	MITNWPALRNGCLILASVALTSVPAIAQTQEPAVPTATASVISSVAITQGA
Ga0070762_104601521	3300005602	Soil	MKTNWPAFRCGFLILSSAVLGASPMLAQTQEPAGATAASAVISSVAITQAPQRA
Ga0075024_1000661763	3300006047	Watersheds	MKMNWPALRSSGLILASMVLATSPVLAQTQEPSGATAVASVISSVAITQA
Ga0070765_1004025953	3300006176	Soil	MKTTRPALRYGCLILASMALAISPVLAQTPEPAGATAAPTVISSVAITQAPERAAVRV
Ga0066660_101915383	3300006800	Soil	MKTNWPALRHSYLILASLVLASSPVHAQSRVPAGVTATAAVISSVAITQAPQRAAVRV
Ga0079219_108325112	3300006954	Agricultural Soil	MKTNWPAMQIGCLILASAALATSPCVAQTQEPAGANATVSVISSVAITQAPQHASVRVEG
Ga0099828_104541313	3300009089	Vadose Zone Soil	MKTNWPALRHGCVILASIAVASSPVLAQTPAGATEAAAG
Ga0126384_124022052	3300010046	Tropical Forest Soil	MITNWPALRNGCLILASVAFGALPSLAQTQEPASPTAAASVISSVAITQ
Ga0134088_101552791	3300010304	Grasslands Soil	MKTNWPALRHGCLILASMSLAASAALAQTQEPVGAKAS
Ga0126354_11947122	3300010857	Boreal Forest Soil	MKTNWPALRHGCLILASIAVAAVPAFAQTQEPSGTTATGAIISSVAIT
Ga0137392_100799031	3300011269	Vadose Zone Soil	MKTNWPALRHGCLILASIAVAASPALAQTQEPSGTSTTGAVISSVAITQAPQRAAVRVE
Ga0137392_102076743	3300011269	Vadose Zone Soil	MKTNWPAFRHGYLILAGMVLTSSPMPAQTQAPAGVTASAAVISSVAIT
Ga0137391_106335752	3300011270	Vadose Zone Soil	MKTNWPALRHGCLILASVALVTSPMLAQTQETSGATGTAAVISSVAITQAPQ
Ga0137389_112639682	3300012096	Vadose Zone Soil	MKTNWPALRHGYLILAGVALASSPLLAQTQALSAAISAVISCVAITPAPERSAVRVE
Ga0137388_114507662	3300012189	Vadose Zone Soil	MKTNWPALRHGYLILAGMALATSPMLAQTQAPAGATPTSAVISSVAITQAPER
Ga0137383_106088281	3300012199	Vadose Zone Soil	MKTNWPALRRGYLILASMALATCPVLAQTQAPAGATAAGAVISSVA
Ga0137399_108562481	3300012203	Vadose Zone Soil	MKTNWPALRHGYLILASIAVASSPVLAQTQAPAGAT
Ga0137362_108875222	3300012205	Vadose Zone Soil	MKTNWPAIRIGCLIFASVALAASPSLAQTQEPAGASATASVISRVAIM
Ga0137381_110728662	3300012207	Vadose Zone Soil	MKTNWPALRHGYLILAGMTLAATPVLAQTQAPAGATATAAV
Ga0137379_101407091	3300012209	Vadose Zone Soil	MKTNWPALRHGYLILAGVALASSPLLAQTQATSAVISSVA
Ga0137386_110740012	3300012351	Vadose Zone Soil	MKTNWPALRRGYLILASMALATCPVLAQTQAPAGATAAGA
Ga0137384_114892962	3300012357	Vadose Zone Soil	MITNWPALRNGCLILASVALISVPAIAQTQEPAVPTATASVISSVAITQGAQRSSVRV
Ga0137385_104015871	3300012359	Vadose Zone Soil	MKTNWPAFRHGYLMLASLALAVSPALAQTQEPAGATATAAVISSVAI
Ga0137360_101022211	3300012361	Vadose Zone Soil	MKTNWPALRHGYLILASVALASSPLLAQTQATSAVISSVAITQAPERSAVRVE
Ga0137361_106265332	3300012362	Vadose Zone Soil	MKTNWPALRHGYLILASMALASSPVLAQTQAPGGATATAAVISS
Ga0137390_106050743	3300012363	Vadose Zone Soil	MKTNWPAMQIGCLILASAALATSPCVAQTQEPAGASATVSVISSVAITQAPQRASVRV
Ga0137398_102250411	3300012683	Vadose Zone Soil	MKTNWPALRHGYLILAGVALASSPLLAQTQATSAVISSVAITQAP
Ga0137394_115221851	3300012922	Vadose Zone Soil	MKTNWPALRYGCLILASIGVAASPALAQTQEPSGTTATGAVISSVAITQAPQRAAVRVE
Ga0137416_103103123	3300012927	Vadose Zone Soil	MKTNWPAIRHGYLILASMALVNSPVLAQTPSGATASAAVISSVAITQA
Ga0137416_103997203	3300012927	Vadose Zone Soil	MKMNWPALRHSYLILASLVLASIPVHAQSQVPAGVTATAAVISSVAITQA
Ga0134079_104776771	3300014166	Grasslands Soil	MKTNWPALRHGYLILASVALTTNPTLAQTPAGATAAGAVISSVAITQAPERSAVR
Ga0137420_10004152	3300015054	Vadose Zone Soil	MKTNWPALRHGYLILAGVALGCSPLFAQTQAPAAATSAVISSVAITQAPERSAVRVEGEG
Ga0134073_102630441	3300015356	Grasslands Soil	MKTNWPALRHGYVMLASMALANSPVLARTPAGAAAV
Ga0134085_104558032	3300015359	Grasslands Soil	MITNWLALRNGCLILASLAFSTVPALAQTQEPAVPTATASVISSVAITQGAQLIILGETPVVL
Ga0187824_102468011	3300017927	Freshwater Sediment	MKTNWPALRCGFMILTGVALGVNPSFAKAQEPAGASATSAVISSVAITQAPQHT
Ga0187801_103607232	3300017933	Freshwater Sediment	MKTNWPALRHGYLILASMALAASPALAQTQEPAGATTSAAVISSVVITQAPE
Ga0187776_103787043	3300017966	Tropical Peatland	MKTNWPALRNGCLILASMAAAMSPVLAQTAEPAGASKTGAAVISSV
Ga0187765_110804873	3300018060	Tropical Peatland	MKTNWPALQRGCLILAGVALGVSPVFAQTQEPAGATATASVISSVAITQAPQRAA
Ga0066662_104746203	3300018468	Grasslands Soil	MKTNWPALRHGYLILASMALAICPVLAQTQAPAGATAAGAVISSVAI
Ga0193735_11317041	3300020006	Soil	MKTNWPALRHSYLILASLVLASSPVHAQSQVPAGVTATVAVISNVAITQAPQRAAVRVEG
Ga0210403_112676632	3300020580	Soil	MKTNWPAMRMGCLILASVAVLTNPSVAQTQEPAGANATASVISSVAITQAPE
Ga0210399_105693723	3300020581	Soil	MKTNWPALRHGCLILASMALATSPVLAQTQEPSGAVANAAVISSV
Ga0210395_113678601	3300020582	Soil	MKTNWPALRHGCLILASMALATSPVLAQAQEPSGASATASVISSVAI
Ga0179596_106091131	3300021086	Vadose Zone Soil	MKTNWPALRHSYLILASLVLASSPVQAQSQVPAGITA
Ga0210404_100367011	3300021088	Soil	MKTNWPALRSSCLILASMAVATSPVLAQTQEPAGATAVSTVISSVAITQAPQRASV
Ga0210404_102781011	3300021088	Soil	MKTNWPALRHGYLIFASVALANSPVLAQSPAGTTVTAAVISSVAITHASQRAAVRV
Ga0210400_108862002	3300021170	Soil	MKTNWQALRHGCLILAGVALGGIPALAQTQEPAGATATASVISSVAITQAP
Ga0210408_101893261	3300021178	Soil	MKTNWPALRHGCLILASMALATSPVLAQTQEPSVTVANASIISSVAITQAPLRAAVRVEG
Ga0210394_102654111	3300021420	Soil	MKTTRPALRYGCLILASLALVASPVLAQTADPGGAPGVSATAAVISSV
Ga0222728_10654262	3300022508	Soil	MKTNWPALRHGCLILASMALATSPVLAQMQEPSAAVANAGVISSVAITQAPLRAAVRVEG
Ga0242663_10138313	3300022523	Soil	MKTNWPALRHGCLILASMALATSPVLAQTQEPSGAVANAAVISSVANTQAPLRAAVRVVG
Ga0242655_100083361	3300022532	Soil	MKTNWPAFRGGFLILSSAVLGASPMLAQTQEPAGATATSAVISSVAITQAPQRASVRV
Ga0212123_103227681	3300022557	Iron-Sulfur Acid Spring	MKTTRPALRYGCLILASMALALSPVLAQTADPSGPSAVMG
Ga0242661_11313801	3300022717	Soil	MKTNWPAYRFGCLILASMVVAAGPSLAQTQEPTGVTATASV
Ga0224550_10213941	3300022873	Soil	MKTTRPALRFGCLILASMSLALSPVLAQTADQSGATATSATASIISSVAITQAP
Ga0228598_10420053	3300024227	Rhizosphere	MKTTRPALRYGCLILASLALVASPVLAQTADPGGAPNVSTTAAVISSVAI
Ga0137417_12852231	3300024330	Vadose Zone Soil	MKTNWPALRHGYLILASMALANSPVLAQSPAGATVTAAVISSVAIT
Ga0137417_14887277	3300024330	Vadose Zone Soil	MKTNWPALRHGYLILASMALANSPVLAQSPAGTTVTAAVISSVAITQAPERAAVRVE
Ga0207692_105823062	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MKTNWPAFRCGCLILSSAVLGASPLLAQTQQPAGATAKSAVISSVAITQAPQRASVRVEG
Ga0207699_100322431	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MITNWPALRNGCLILASVAFSTVPALAQTQEPAVPTATASVISSVAITQGAQRSSVRVEG
Ga0207665_107728011	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKTNWPALRHGYVILASMALANSPVLAQTPAGRAAVISSVA
Ga0209438_11905691	3300026285	Grasslands Soil	MKTNWPALRHGYLILASMALANSPVLAQSPAGATVTAAVISSVAITQA
Ga0209234_10240815	3300026295	Grasslands Soil	MKTNWPALRHSYLILASLVLASSAVHAQSQVPAGVTATAAVISSV
Ga0209236_12382822	3300026298	Grasslands Soil	MKTNWPALRHGCLILVSIAVAASPALAQTKEPSGTTTTGAVISSVAITQAPQRSAV
Ga0209152_100243955	3300026325	Soil	MKTNWPALRHGYVILASMALANSSVLAQTPAGRAAAVISS
Ga0209802_100217916	3300026328	Soil	MKTNWPALRHGYLILASMALASSPVLAQTQAPAGATAAA
Ga0209803_11965501	3300026332	Soil	MKTNWPALRHGCLILVSIAVAASPALAQTKEPSGTTTTGAV
Ga0209158_10975043	3300026333	Soil	MKTNWPALRHGYLILASMALASSPVLAQTQAPAGAT
Ga0257147_10254152	3300026475	Soil	MITNWPALRNGCLILASVAFGSMPALAQTQEPAGATATASVISSVAITQG
Ga0257155_10313012	3300026481	Soil	MMTNWPAMRIGCLILASAALTTSSSFAQTQEPAGAGATASVISSVAITQAPQRASVR
Ga0209378_11519822	3300026528	Soil	MKTNWLALRHGYLILASVALTTSPTLAQTPAGATAAG
Ga0209160_12225612	3300026532	Soil	MKTNWPALRHGCLILASMALASSPVLAQTQAAAGT
Ga0209805_10805254	3300026542	Soil	MKTNWPALRHGYVILASMALANSSVLAQTPAGRAAAVISSVAITQ
Ga0179587_102215543	3300026557	Vadose Zone Soil	MKTNWPALRHGYLILASMALASSSVLAQTQVPGSATVT
Ga0209908_100499691	3300027745	Thawing Permafrost	MKTTRPALRFGCLILASMSLALSPVLAQTADQSGATATSATASIISSVAIT
Ga0209773_102731521	3300027829	Bog Forest Soil	MKTTRPALRYGCLILASLALVASPVLAQNADPGGAPNVSATASVISSVAITQAPERAAVRVE
Ga0209180_101860433	3300027846	Vadose Zone Soil	MKTNWPALRHGYLMLASVALAVSPVLAQTQEPAGATATAAVISSVAITQAPQ
Ga0209180_106183092	3300027846	Vadose Zone Soil	MKTNWPALRHGYLILASMAVAASPVLAQTQAPAGATATVA
Ga0209488_100927804	3300027903	Vadose Zone Soil	MKTNWPALRHGYLILASMALANSPVLAQSPAGTTVTAAVIS
Ga0302234_102752152	3300028773	Palsa	MKTTRPALRYGCLILASMALALSPALAQTPEPSGVTATAAVISSVAITQ
Ga0302229_102408601	3300028879	Palsa	MKTTRPALRYGCLILASMALALSPALAQTPEPSGVTATA
Ga0308309_107418732	3300028906	Soil	MKTNWPAFRCGCLILSSAVLGATPMLAQTQEPAGATATSAVISSVAITQAPQRS
Ga0308309_107681791	3300028906	Soil	MKTNWPAFRCGFLILSSAVVGASPMLAQTQEPAGATAASAVISSVAITQAPQRASVRVEG
Ga0222749_100992423	3300029636	Soil	MKMNWPALRSSGLILASVALATSPALAQTQEPSGATALASVISSVAITQAPQQASVRVEG
Ga0265760_100349474	3300031090	Soil	MKTNWPAFRCGFLILSSAVMGASPMLAQTQEPAGATAASAVISSVAITQAPQ
Ga0310686_1083459754	3300031708	Soil	MKTNWPAFRCGCLILSSAVLGVSPMLAQTQEPAGATAASSVISSVAITQAPQRAS
Ga0307474_109501622	3300031718	Hardwood Forest Soil	MKTTRPALRYGCLILASMALAISPVLAQTPEPAGATAATT
Ga0307474_111784721	3300031718	Hardwood Forest Soil	MKTNWPALRHGYLILASVALATSPVLARPQAPAASTPAGAVISSVAITQE
Ga0307475_105327802	3300031754	Hardwood Forest Soil	MKTNWPAMRIGCLILASAALVTSQSVAQTQEPAGASATASVISSVAITQAP
Ga0307479_105021561	3300031962	Hardwood Forest Soil	MKTNWPALRHGYLILASMALASSPALAQTQVATGTSASTAVISSVAIT
Ga0316053_1020333	3300032120	Soil	MKTNWPAYRCGFLILSSAALGANPVLAQAQEPSGATATSAVIRSVAITEAPQHASVRVEG
Ga0307470_117022481	3300032174	Hardwood Forest Soil	MKTNWPAFRHGCLILASIAVAASPAVAQSQEPSGTTAPGAVISSVAITQAP
Ga0335079_1000425518	3300032783	Soil	MKTNWPALRNGCLILVSAAFVASPLLAQTQEPAGATATTAVISSVALTQGTE