Metagenome / Metatranscriptome Family F097705

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097705
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	81 residues
Representative Sequence	MPNTIDVTIPVEPEAAAALQDARKREAVGRIVSRILRPQPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR
Number of Associated Samples	88
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.69 %
% of genes near scaffold ends (potentially truncated)	41.35 %
% of genes from short scaffolds (< 2000 bps)	86.54 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.269 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (9.615 % of family members)
Environment Ontology (ENVO)	Unclassified (21.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.769 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.60% β-sheet: 1.87% Coil/Unstructured: 49.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13470	PIN_3	25.00
PF13561	adh_short_C2	9.62
PF02604	PhdYeFM_antitox	1.92
PF03480	DctP	1.92
PF02492	cobW	1.92
PF00589	Phage_integrase	1.92
PF00296	Bac_luciferase	1.92
PF05685	Uma2	0.96
PF13378	MR_MLE_C	0.96
PF00743	FMO-like	0.96
PF10083	DUF2321	0.96
PF13683	rve_3	0.96
PF01381	HTH_3	0.96
PF03884	YacG	0.96
PF13419	HAD_2	0.96
PF00378	ECH_1	0.96
PF01609	DDE_Tnp_1	0.96
PF14319	Zn_Tnp_IS91	0.96
PF02705	K_trans	0.96
PF01656	CbiA	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.92
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.92
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.92
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.96
COG3024	Endogenous inhibitor of DNA gyrase, YacG/DUF329 family	Replication, recombination and repair [L]	0.96
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.96
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.96
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.96
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.96
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.96
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.96
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.04 %
Unclassified	root	N/A	31.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.19 %
Unclassified	root	N/A	31.73 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	34.62 %
Unclassified	root	N/A	31.73 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	22.12 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Belnapia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	11.54 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.96 %
Humitalea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Belnapia rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea	4.81 %
unclassified Belnapia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → unclassified Belnapia	1.92 %
Humitalea rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea → Humitalea rosea	0.96 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Belnapia rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea	4.81 %
Belnapia sp. F-4-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → unclassified Belnapia → Belnapia sp. F-4-1	1.92 %
Humitalea rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea → Humitalea rosea	0.96 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001449\|JGI20208J14878_1022660	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300004152\|Ga0062386_101868091	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005538\|Ga0070731_10712350	Not Available	667	Open in IMG/M
3300005591\|Ga0070761_10006129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6945	Open in IMG/M
3300005591\|Ga0070761_10234617	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300006176\|Ga0070765_100968996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea	804	Open in IMG/M
3300006176\|Ga0070765_101932704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea	552	Open in IMG/M
3300009093\|Ga0105240_10298177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1845	Open in IMG/M
3300009101\|Ga0105247_10482018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	900	Open in IMG/M
3300009826\|Ga0123355_11981477	Not Available	541	Open in IMG/M
3300010154\|Ga0127503_10889581	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300010341\|Ga0074045_10061179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2690	Open in IMG/M
3300010343\|Ga0074044_10326371	Not Available	1008	Open in IMG/M
3300010366\|Ga0126379_10914276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	980	Open in IMG/M
3300010371\|Ga0134125_10268740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1894	Open in IMG/M
3300010371\|Ga0134125_10297307	All Organisms → cellular organisms → Bacteria → Proteobacteria	1793	Open in IMG/M
3300010373\|Ga0134128_10502945	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300010375\|Ga0105239_13008394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	549	Open in IMG/M
3300010376\|Ga0126381_102830324	Not Available	692	Open in IMG/M
3300010379\|Ga0136449_100449628	Not Available	2261	Open in IMG/M
3300010379\|Ga0136449_103407835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	608	Open in IMG/M
3300010396\|Ga0134126_12515648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	560	Open in IMG/M
3300011120\|Ga0150983_11451845	Not Available	617	Open in IMG/M
3300011120\|Ga0150983_16243281	Not Available	538	Open in IMG/M
3300012212\|Ga0150985_106488074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea → Humitalea rosea	829	Open in IMG/M
3300012212\|Ga0150985_110496039	Not Available	506	Open in IMG/M
3300012212\|Ga0150985_120700608	Not Available	835	Open in IMG/M
3300013104\|Ga0157370_11970265	Not Available	524	Open in IMG/M
3300013308\|Ga0157375_11001251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	975	Open in IMG/M
3300014169\|Ga0181531_10410410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea	833	Open in IMG/M
3300014200\|Ga0181526_10297672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → unclassified Belnapia → Belnapia sp. F-4-1	1027	Open in IMG/M
3300014489\|Ga0182018_10022609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4115	Open in IMG/M
3300014489\|Ga0182018_10487651	Not Available	653	Open in IMG/M
3300014495\|Ga0182015_10180595	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300014499\|Ga0182012_10981148	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300014501\|Ga0182024_12005749	Not Available	640	Open in IMG/M
3300014654\|Ga0181525_10533044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	651	Open in IMG/M
3300014657\|Ga0181522_10081919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1848	Open in IMG/M
3300015371\|Ga0132258_10225195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4565	Open in IMG/M
3300015374\|Ga0132255_106213135	Not Available	505	Open in IMG/M
3300016319\|Ga0182033_12127506	Not Available	512	Open in IMG/M
3300016445\|Ga0182038_12186424	Not Available	502	Open in IMG/M
3300017948\|Ga0187847_10356817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea	801	Open in IMG/M
3300018033\|Ga0187867_10109558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1605	Open in IMG/M
3300018038\|Ga0187855_10858321	Not Available	530	Open in IMG/M
3300018042\|Ga0187871_10572930	Not Available	626	Open in IMG/M
3300018043\|Ga0187887_10216469	Not Available	1138	Open in IMG/M
3300018044\|Ga0187890_10745411	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300018044\|Ga0187890_10799325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300018047\|Ga0187859_10914832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea	505	Open in IMG/M
3300020021\|Ga0193726_1055457	Not Available	1879	Open in IMG/M
3300020579\|Ga0210407_10190052	Not Available	1593	Open in IMG/M
3300020580\|Ga0210403_10768795	Not Available	768	Open in IMG/M
3300021168\|Ga0210406_10949091	Not Available	644	Open in IMG/M
3300021171\|Ga0210405_10527198	Not Available	924	Open in IMG/M
3300021403\|Ga0210397_10105450	All Organisms → cellular organisms → Bacteria → Proteobacteria	1910	Open in IMG/M
3300021405\|Ga0210387_10815837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	824	Open in IMG/M
3300021433\|Ga0210391_11460842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	525	Open in IMG/M
3300021475\|Ga0210392_10245726	Not Available	1266	Open in IMG/M
3300021477\|Ga0210398_10499303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	991	Open in IMG/M
3300021560\|Ga0126371_10175930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2220	Open in IMG/M
3300022533\|Ga0242662_10081123	Not Available	895	Open in IMG/M
3300023101\|Ga0224557_1185337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300025574\|Ga0208717_1018003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1930	Open in IMG/M
3300025900\|Ga0207710_10751326	Not Available	512	Open in IMG/M
3300025915\|Ga0207693_11282000	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300027110\|Ga0208488_1078980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	535	Open in IMG/M
3300027825\|Ga0209039_10219553	Not Available	767	Open in IMG/M
3300027853\|Ga0209274_10171648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	1098	Open in IMG/M
3300027853\|Ga0209274_10213096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → unclassified Belnapia → Belnapia sp. F-4-1	984	Open in IMG/M
3300027905\|Ga0209415_11086737	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300028556\|Ga0265337_1070286	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300028566\|Ga0302147_10128506	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300028748\|Ga0302156_10040419	All Organisms → cellular organisms → Bacteria	2583	Open in IMG/M
3300028800\|Ga0265338_10103583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2311	Open in IMG/M
3300028806\|Ga0302221_10382906	Not Available	613	Open in IMG/M
3300029910\|Ga0311369_11451170	Not Available	517	Open in IMG/M
3300029914\|Ga0311359_10870316	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300029990\|Ga0311336_10456561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	1078	Open in IMG/M
3300030002\|Ga0311350_10803623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	843	Open in IMG/M
3300030114\|Ga0311333_10728778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	828	Open in IMG/M
3300030580\|Ga0311355_11333036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	627	Open in IMG/M
3300030618\|Ga0311354_11210259	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300031234\|Ga0302325_10957186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1178	Open in IMG/M
3300031236\|Ga0302324_100971200	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300031525\|Ga0302326_13146486	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031708\|Ga0310686_107770970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	963	Open in IMG/M
3300031708\|Ga0310686_110747530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1835	Open in IMG/M
3300031788\|Ga0302319_11179263	Not Available	710	Open in IMG/M
3300031823\|Ga0307478_11191963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	634	Open in IMG/M
3300031902\|Ga0302322_100084982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	3251	Open in IMG/M
3300032076\|Ga0306924_12569134	Not Available	509	Open in IMG/M
3300032805\|Ga0335078_11273634	Not Available	842	Open in IMG/M
3300032828\|Ga0335080_11790699	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300032892\|Ga0335081_11299487	Not Available	821	Open in IMG/M
3300032895\|Ga0335074_10008669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14143	Open in IMG/M
3300032895\|Ga0335074_10250039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2087	Open in IMG/M
3300032895\|Ga0335074_10366688	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300032898\|Ga0335072_10003681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	22994	Open in IMG/M
3300032898\|Ga0335072_10049481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	5672	Open in IMG/M
3300032898\|Ga0335072_11244752	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300032898\|Ga0335072_11319896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
3300033475\|Ga0310811_10079425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4306	Open in IMG/M
3300034282\|Ga0370492_0136905	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.54%
Host-Associated	Host-Associated	13.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.12%
Aquatic	Environmental → Aquatic	14.42%
Plants	Host-Associated → Plants	12.50%
Arthropoda	Host-Associated → Arthropoda	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.73%
Peat	Environmental → Terrestrial → Peat	15.38%
Freshwater	Environmental → Aquatic → Freshwater	14.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.81%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.46%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.96%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.62%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.69%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.73%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.96%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.96%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001449	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20208J14878_10226601	3300001449	Arctic Peat Soil	MSTTVNVTIPVEATAAAELGDPRKREAVGRIVSRILRREPDHDLLLQAMERLGVDARVKGLTPEILETELAAYKSERRR*
Ga0062386_1018680911	3300004152	Bog Forest Soil	MPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERS
Ga0070731_107123501	3300005538	Surface Soil	RYTYVLQEVSMTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERLSTDATARGLTPGTLEAELAAHKAERTR*
Ga0070761_100061292	3300005591	Soil	MASFVDVVIPVEAEVAAALADSRKREAVGRIVSRILRPRPDHDPLIEAMERLGVDAKAKGLTTETLDIELAAHKAERTR*
Ga0070761_102346174	3300005591	Soil	EAAAALQDARKREAIGRIVSRILRPHPAQDPLLDAMQRLSADATTKGLTPEIVEAELAAHKAERSR*
Ga0070765_1009689962	3300006176	Soil	MAGYVDVVIPVEAEAAAALEDSRKCEAVGRIVSRILRPRPDHDPLVEAMERLSVDAKAKGLTAETLDVELAAHKAERTR*
Ga0070765_1019327041	3300006176	Soil	MVGLVEVLIPVDAAAAVALNDERKREAIGRIVSRILQPHPDHAPLLEAMEPFGADAKAKGLTQETFAAELTAHKAEQIR*
Ga0105240_102981771	3300009093	Corn Rhizosphere	MPNTIDVTIPVEPEAAAALQDARKRAAIGRIVSRILRPQPGQNPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR*
Ga0105247_104820182	3300009101	Switchgrass Rhizosphere	LFRRTGTQHSFAALVSSEAKHYMLGVQEAALVGIVEVLIPVDAAAAVALNDERKREAIGRIVSRILQPRPDHDPLLEAMERFGADAKAKGLTNETLAAELTAHKAERTR*
Ga0123355_119814772	3300009826	Termite Gut	MADVVEVLIPVEAGVAGVLSDARTREAVGRIISRILQPRADHDPLLEAMQRLAGDAKDKGLTPEALEAELAAHKSERTR*
Ga0127503_108895812	3300010154	Soil	DMTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERFSTDATAKGLTPETLEAELAAHKAERTR*
Ga0074045_100611791	3300010341	Bog Forest Soil	MANIVDVVIPVEAEAAAALTDTRKREAVGRIVSRILRPQPDHDPLVEAMERLSADAKAKGLTAETLDTELAAHKAERAR*
Ga0074044_103263712	3300010343	Bog Forest Soil	MANIVDVVILVEAEAAAALTDTRKREAVGRIVSRILRPQPDHDPLVEAMERLSADAKAKGLTAETLDTELAAHKAERAR*
Ga0126379_109142762	3300010366	Tropical Forest Soil	EAEAAAALGDARKREAIGRIVSRLLRPQPDHDPLLEVMQRLSAEAKAKGLTSQILEDVAPAVDETPG*
Ga0134125_102687401	3300010371	Terrestrial Soil	AYFASVRSEARMPDTIDVPIPVEPEAAAALQDARKREAIGRIISRILRPHPGQDPLLDAMQQLSADAKAKGLTPEILEAELAAHKAERSR*
Ga0134125_102973072	3300010371	Terrestrial Soil	MPNTIDVTIPVEPEPAVALQDTRKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLLPEILEAELAAHKAERCR*
Ga0134128_105029452	3300010373	Terrestrial Soil	MPDTIDVPIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDPLLDAMQQLSADAKAKGLSPEILEVELAAHKAERSR*
Ga0105239_130083941	3300010375	Corn Rhizosphere	MPGTVEVVIPIEAEAASALADPRKREAVGRIVSRILRPQADHDPLLEAMERLGVDATAKGLTTELLETEIAAHKAERAR*
Ga0126381_1028303242	3300010376	Tropical Forest Soil	MPETVDVAIPVEAEAAQALSDARKREAVGRIISRLLRPQPGQDPLLDAMRRLSADAAAKGLTPETLERELADHKAGRSS*
Ga0136449_1004496284	3300010379	Peatlands Soil	AEAAAALTDSRKHEAVGRIVSRILRPQPDHDPLLEAMERLSADAKAKGLTPETLEAELAAHKAERTR*
Ga0136449_1034078351	3300010379	Peatlands Soil	MPNTIDVTIPVEPEAAAVLQDARKREAIGRIVSRILRPQPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKTH*
Ga0134126_125156481	3300010396	Terrestrial Soil	EAAAALQDARKREAIGRIVSRILRPQPGQDPLLDAMQRLSAEAKAKGLTPEILEAELAAHKAERSR*
Ga0150983_114518451	3300011120	Forest Soil	GIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERFSTDATAKGLTPETLEAELAAHKAERTR*
Ga0150983_162432811	3300011120	Forest Soil	MTGIVEVVVPVEASAALTDAHKREAVGRIVSHILRPLPDHDPLLEVMDRFSADAAAKGLKPETLEAELAAHEAERTR*
Ga0150985_1064880741	3300012212	Avena Fatua Rhizosphere	MGSLVDVVIPVEAEAAAALADSRKREAVGRIVSRILRPQPDHDPLIEAMERLSADAQVKGLTAETLDTELAAHKAERTR*
Ga0150985_1104960391	3300012212	Avena Fatua Rhizosphere	GMAGTVEVVISVETEAAAALTDSRKREAVGRIVSRIFRPQPDHDPLLDAMERLSADAKAKGLTPKMLKAELGAHKAERTR*
Ga0150985_1207006082	3300012212	Avena Fatua Rhizosphere	MASFVDVVIPVEAEAAAALGDLRKREAVGRIVSRILRPQPDHDPLIEAMERLSVDAKAKGLTAETLDIELAAHKTERSG*
Ga0157370_119702651	3300013104	Corn Rhizosphere	SLRPEARMPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPQPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR*
Ga0157375_110012512	3300013308	Miscanthus Rhizosphere	MIGLQEERMAGTVEVVIPVEAEAAASLTDARKREAVGRIVSRILRPRPDHDPLLEAMERIAVDAMAKGLTPEVLEAELVAHKAERTR*
Ga0181531_104104101	3300014169	Bog	MPNTIGVTIPIEPEAAAVLQDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLIPEILEAELAAHKAERSR*
Ga0181526_102976721	3300014200	Bog	PRPMFPASAYFASVRSEARMPNTIDVTIPVEPEAAAALRDARKREAIGRIVSRILRPRPGQDPLLDAMQRLSADAKTKGLTPEILEAELAAHKAERSR*
Ga0182018_100226093	3300014489	Palsa	MPNTIDVTIPVEPEAAAALQDARKREAVGRIVSRILRPQPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR*
Ga0182018_104876511	3300014489	Palsa	AAAALADERKRAAVGRIVSRIMRPNPDHDPLLQTMERLSADAAKKGFTPDLLVAEIAAHKRERAR*
Ga0182015_101805952	3300014495	Palsa	MPNTIDVTIPVEPEAAAALQDSRKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR*
Ga0182012_109811482	3300014499	Bog	PVEPEAAAALQDARKREAIGRIVSRILRPHPGQAPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR*
Ga0182024_120057492	3300014501	Permafrost	MMGLQEVSMAAIVDVVIPVEAEAAAALTDTRKREAVGRIVSRILRPQPDHDPLVEAMERLSADAKAKGLTAEVLDAELAAHEAERTR*
Ga0181525_105330441	3300014654	Bog	MPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLMPEILEAELAAHKAERSR*
Ga0181522_100819193	3300014657	Bog	MAGIVEVVIPVEAEAAAALADARKREAVGRIVSRILRPQPDHDALLEAMARFSADAKTKGLTPDMLEAELAAHKVERTR*
Ga0132258_102251953	3300015371	Arabidopsis Rhizosphere	VEAEAAVALTDERKGEAVGRIVSRIVRPQPGQDLLLEAMRKLGTEARARGLTAEALEAELAAHKVERTR*
Ga0132255_1062131351	3300015374	Arabidopsis Rhizosphere	EAEAAVALTDERKGEAVGRIVSRIVRPQPGQDLLLEAMRKLGTEARARGLTAEALEAELAAHKVERTR*
Ga0182033_121275062	3300016319	Soil	MPETVDVAIPVEAEAAQALSDARKREAVGRIISRLLRPRPGQDPLLDAMRRLSADAAAKGLTPEVLEHELADHKAGRSR
Ga0182038_121864241	3300016445	Soil	MPEIVDVAIPVEAEAAQVLADARKREAVGRIISRLLRPQPGQDPLLDAMRRLSTDPAAKGLTPEILERE
Ga0187847_103568171	3300017948	Peatland	DRTMAGRRPPECRPARLLPLFPAPAYFASVRSEARMPNTIDVTIPVEPEAAAALRDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPETLEAELTAHKAEHSR
Ga0187867_101095582	3300018033	Peatland	MAGIVDVVIPVEAEAAAALTDARKREAVGRIVSRILRPHPDHDLLVQTMERLGADAKAKGLTDELLADELVAHKAERTR
Ga0187855_108583212	3300018038	Peatland	PMFPASAYFASVRSEARMPNTIDVTIPVEPEAAAALQDSRKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR
Ga0187871_105729302	3300018042	Peatland	MVGMVDVVIPVEAEAAAALSNTRKREAVGRIVSRILRPHPDHDPLVEAMERFGADAEAKGLTDETIDTELAAHKAERTR
Ga0187887_102164692	3300018043	Peatland	MVGMVDVVIPVEAEAAAALSDTRKREAVGRIVSRILRPHPDHDPLVEAMERFGADAEAKGLTDETIDTELAAHKAERTR
Ga0187890_107454111	3300018044	Peatland	VSMAGIVDVVIPVEAEAAAALTDARKREAVGRIVSRILRPHPDHDLLVQTMERLGADAKAKGLTDELLADELVAHKAERTR
Ga0187890_107993252	3300018044	Peatland	ARMPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELTAHKAERSR
Ga0187859_109148321	3300018047	Peatland	MFPASAYFASVRSEARMPNTIDVTIPVEPEAAAALQDSRKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR
Ga0193726_10554573	3300020021	Soil	MASLVDIVIPVEAEAAAALADSRKREAVGRIVSRILRPQPDHDLLIEAMERLSADAKVKGLTAETLDMELAAHKTERTR
Ga0210407_101900522	3300020579	Soil	MTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERFSTDATAKGLTPETLEAELAAHKAERTR
Ga0210403_107687951	3300020580	Soil	MTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEVMDRFSADAAAKGLKPETLEAELAAHEAERT
Ga0210406_109490912	3300021168	Soil	MTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMEQLSTDATAKGLTPETLEAELAAHKAERTR
Ga0210405_105271981	3300021171	Soil	MYVLQEVGMTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERFSTDATAKGLTPETLEAELAAHKAERTR
Ga0210397_101054501	3300021403	Soil	YVLQDVSMTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERLSTDATARGLTPGTLEAELAAHKAERTR
Ga0210387_108158372	3300021405	Soil	MVGLVEVLIPVDAAAAVALNDERKREAIGRIVSRILQPHPDHAPLLEAMERFGADAKAKGLTQETFAAEL
Ga0210391_114608422	3300021433	Soil	MFPASAHFARVRLEARLPNTIDVIIPVEPEAAAALQDARKREAIGRIVSRILRPHPAQDPLLDAMQRLSADATTKGLTPEIVEAELAAHKAERSR
Ga0210392_102457262	3300021475	Soil	MTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERLSTDATAKGLTPETLEAELAAHKAERTR
Ga0210398_104993031	3300021477	Soil	SAHFARVRLEARLPNTIDVIIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDLLFDAMQRLSADAKTKGLTPEILEAELAAHKAERSR
Ga0126371_101759304	3300021560	Tropical Forest Soil	MPDTVDVAIPVEADAAAALTDRRKREAVGRIVSRILRPRPGQDPLLDAMDRLGADAKAKGLTPAILRSELKAHKIERRR
Ga0242662_100811232	3300022533	Soil	VGMTGIVEVVIPVEAEAAAALTDTRKREAVGRIVSRILRPLPDHDPLLEAMERFSTDATAKGLTPETLEAELAAHKAERTR
Ga0224557_11853371	3300023101	Soil	EPEAAPALQDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSDDAKTKGLTPDILEAELATHKAERSR
Ga0208717_10180033	3300025574	Arctic Peat Soil	MSTTVNVTIPVEATAAAELGDPRKREAVGRIVSRILRREPDHDLLLQAMERLGVDARVKGLTPEILETELAAYKSERRR
Ga0207710_107513261	3300025900	Switchgrass Rhizosphere	MLGVQEAALVGIVEVLIPVDAAAAVALNDERKREAIGRIVSRILQPRPDHDPLLEAMERFGADAKAKGLTQETLAAELAAHKAERTR
Ga0207693_112820002	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	NALLLLGPEPYMIGLQEGRMVGTVEVVIPVEAEAAASLTDARKREAVGRIVSRILRPRPDHDPLLDAMGRIAADAETKGLTPEMLEAELVAHKAERTR
Ga0208488_10789802	3300027110	Forest Soil	MFSASAHFARVRLEARLPNTIDVIIPVEPEAAAALQDARKREAIGRIVSRILRPHPAQDPLLDAMQRLSADATTKGLTPEIVEAELAAHKAERSR
Ga0209039_102195531	3300027825	Bog Forest Soil	MASMVDVVIPVEAEAAAALTDTRKREAVGRIVSRILRPQPDHDPLVEAMERLSADAKAKGLTAETLDTELAAHKAERAR
Ga0209274_101716481	3300027853	Soil	PEAAAALQDARKREAIGRIVSRILRPHPAQDPLLDAMQRLSADATTKGLTPEIVEAELAAHKAERSR
Ga0209274_102130962	3300027853	Soil	MASFVDVVIPVEAEVAAALADSRKREAVGRIVSRILRPRPDHDPLIEAMERLGVDAKAKGLTTETLDIELAAHKAERTR
Ga0209415_110867371	3300027905	Peatlands Soil	QPWPRPTFPASAYFASVRSEARMPNTIDVTIPVEPEAAAALQDSRKREAIGRIVSRILRPQPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKTH
Ga0265337_10702861	3300028556	Rhizosphere	IPVGPEAAAALADTTKREAIGGIVSRLLRPVVGDDPLLDAMGRLGADATARGLTPQVLDAELAAHKAERRRWSSSMPRHW
Ga0302147_101285062	3300028566	Bog	MAGIVDVVIPVEAEAAAVLTDARKREAVGRIVSRILRPHPDHDQLVETMERLGADAKAKGLTDEVVAGELVAHKAERTR
Ga0302156_100404193	3300028748	Bog	MAGIVDVVIPVEAEAAAVLTDARKREAVGRIVSRILRPHPDHDQLVETMERLGADAKAKGLTDEVLAGELVAHKAERTR
Ga0265338_101035833	3300028800	Rhizosphere	MAGMVDVTIPVGPEAAAALADTTKREAIGGIVSRLLRPVVGDDPLLDAMGRLGADATARGLTPQVLDAELAAHKAERRRWSSSMPRHW
Ga0302221_103829061	3300028806	Palsa	MASLVDVVIPVEAEAAAALADSRKREAVGRIVSRILRPQPDHDPLIEAMERLSADAKAKGLTVDLLDIELAAHKAERPR
Ga0311369_114511701	3300029910	Palsa	MASLVDVVIPVEAEAAAALADSRKREAVGRIVSRILRPQPDHDPLIEAMERLSADAKAKGLTVDLLDIELAAHKAERTR
Ga0311359_108703161	3300029914	Bog	MAGIVDVIIPVEAEAAAVLTDARKREAVGRIVSRILRPHPDHDQLVETMERLGADAKAKGLTDEVVAGELVAHKAERTR
Ga0311336_104565612	3300029990	Fen	MPNTVDVTIPVEPEAAAALGDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSTDAKAKGLTPESLEAELPAHKAERTR
Ga0311350_108036231	3300030002	Fen	MPNTVDVTIPVEPEAAAALGDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSTDAKAKGLTPESLEAELAARKAERSR
Ga0311333_107287783	3300030114	Fen	MPNTVDVTIPVEPEAAAALGDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAQGLTPESLEAELAARKAERSR
Ga0311355_113330362	3300030580	Palsa	MFPASAYFASVRSEARMPNTIDVTIPVEPEAAAALQDSRKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELVAHKAERSR
Ga0311354_112102593	3300030618	Palsa	RMPNTIDVTIPVEPEAAAALQDSRKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR
Ga0302325_109571861	3300031234	Palsa	MFPASAYFASVWSEARMPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR
Ga0302324_1009712003	3300031236	Palsa	MPNTIDVTIPVEPEAAAALRDARKREAIGRIVSCILRPHPGQDPLPDAMQRLSADARAKGLTPEILEAEL
Ga0302326_131464862	3300031525	Palsa	HFASVWSEARMPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKTKGLTPEILEAELTAHKAERPR
Ga0310686_1077709703	3300031708	Soil	MPNTIDVPIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDLLLDAMQRLSADAKAKGLTPEILEAELAAHKAERSR
Ga0310686_1107475303	3300031708	Soil	MDGLVEVTIPVEPEAAAALADAARREAVGRIVSRLLRPVAGDDPLLQAMEQLSANAKAKGMTPQILDAELTAHKAGRSR
Ga0302319_111792631	3300031788	Bog	MAGIVDVVIPVEAEAAAALTDARKREAVGRIVSRILRPHPDHDLLVQTMERLGADAKAKGLTDEVLAGELVAHKAERTR
Ga0307478_111919632	3300031823	Hardwood Forest Soil	MFPASAHFARVRLEARMPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPHPGQDLLLDAMQRLSADAKTKGLTPEILEAELAAHKAERSR
Ga0302322_1000849824	3300031902	Fen	MPNTVDVTIPVEPEAAAALGDARKREAIGRIVSRILRPHPGQDPLLDAMQRLSADAKAKGLTPESLEAELPAHKAERTR
Ga0306924_125691341	3300032076	Soil	MPEIVDVAIPVEAEAAQVLADARKREAVGRIISRLLRPQPGQDPLLDAMRRLSADASAKGLTPGILERELADHKAGRSR
Ga0335078_112736342	3300032805	Soil	QTVDVAIPVEAEVAQALADARKREAVGRIVSRLLRPQLGQDPLLDAMRRLSTDAAAKGLTPEILERELDGHKAGRCPG
Ga0335080_117906991	3300032828	Soil	MPETVDVAIPVEAEAAQALGDARKREAVGRIVSRLLRPQAGEDPLLDAMRRLSADAAAKGLTPEILERELADHKVERSR
Ga0335081_112994871	3300032892	Soil	MFPASAHFASVQSEARMPNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPQPGQDPLLDAMQRLSADAKAKGLTPEILEAELTAHKAERSR
Ga0335074_100086697	3300032895	Soil	MPETVDVAIPVEAEAARALADARKREAVGRIVSRLLRPQPGHDPLLDAMRRLSTDAAAKGLTPAILERELADHTAGRCPG
Ga0335074_102500394	3300032895	Soil	MPEIVDVAIPVEAEAAQALGDARKREAIGRIVSRLLRPQAGEDPLLDAMRRLSADATAKGLTPEILERELADHKVERSR
Ga0335074_103666882	3300032895	Soil	MAGIVEVVIPVEAEAAAALTDARKREAVGRIVSRILRPQPDHDPLLETMARLSADARAKGLTGETLEAELAVHKAERSR
Ga0335072_100036818	3300032898	Soil	MPNTIDVTIPVEPEAATALQDVRKREAIGRIVSRILRPQPGQDPLLDAMQRLSAGARAKGLTPEILEAELAAHKAERSR
Ga0335072_100494816	3300032898	Soil	RLEARISNTIDVTIPVEPEAAAALQDARKREAIGRIVSRILRPKPGQDPLLDAMQRLSADAKAKGLTPETLEAELAAHKAEHSR
Ga0335072_112447522	3300032898	Soil	IFPPSGYFASVRPEARMPDTIDVIIPVEPEAAAALQDDRKREAIGRIVSRILRPHPGQDPLLDAMQRLCSDAKAKGLTPEILEAELAAHKAERSR
Ga0335072_113198961	3300032898	Soil	AAAALTDARKREAVGRIVSRILRPQPDHDPLLETMARLSADARAKGLTGETLEAELAVHKAERSR
Ga0310811_100794255	3300033475	Soil	SFAALVSSEAKHYMLGVQEAALVGIVEVLIPVDAAAAVALNDSRKREAIGRIVSRILQPHPDHDPLLEAMERFGADAKAKGLTNETLAAELTAHKAERTR
Ga0370492_0136905_3_212	3300034282	Untreated Peat Soil	MARTVDVVIPVEAEAAAALTDARKREAVGRIVSRILRPQPDHDPLLEAMERFSADAETTGLTPDMLETEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097705

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences