NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097691

Metagenome / Metatranscriptome Family F097691

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097691
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 48 residues
Representative Sequence MLLLALIARLLPVPAEQPDQGALPLNPAIGHLGLTIIALVYVLVVMWRG
Number of Associated Samples 81
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 91.35 %
% of genes near scaffold ends (potentially truncated) 13.46 %
% of genes from short scaffolds (< 2000 bps) 76.92 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.769 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa
(11.539 % of family members)
Environment Ontology (ENVO) Unclassified
(23.077 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.923 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 40.26%    β-sheet: 0.00%    Coil/Unstructured: 59.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF01203T2SSN 36.54
PF13601HTH_34 5.77
PF04612T2SSM 4.81
PF05193Peptidase_M16_C 3.85
PF13361UvrD_C 1.92
PF00106adh_short 0.96
PF00873ACR_tran 0.96
PF03934T2SSK 0.96
PF07963N_methyl 0.96
PF02501T2SSI 0.96
PF14224DUF4331 0.96
PF00155Aminotran_1_2 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG3149Type II secretory pathway, component PulMIntracellular trafficking, secretion, and vesicular transport [U] 4.81
COG3156Type II secretory pathway, component PulKIntracellular trafficking, secretion, and vesicular transport [U] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A55.77 %
All OrganismsrootAll Organisms44.23 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001131|JGI12631J13338_1032167Not Available537Open in IMG/M
3300002245|JGIcombinedJ26739_100351127All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1356Open in IMG/M
3300004091|Ga0062387_100200764Not Available1203Open in IMG/M
3300004152|Ga0062386_100162664All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1745Open in IMG/M
3300005538|Ga0070731_10451004Not Available856Open in IMG/M
3300005538|Ga0070731_10513106Not Available798Open in IMG/M
3300005541|Ga0070733_11027028Not Available553Open in IMG/M
3300005591|Ga0070761_10311012Not Available950Open in IMG/M
3300005602|Ga0070762_10866241Not Available614Open in IMG/M
3300005610|Ga0070763_10870929Not Available535Open in IMG/M
3300005712|Ga0070764_10968711Not Available535Open in IMG/M
3300005712|Ga0070764_11110059Not Available501Open in IMG/M
3300006176|Ga0070765_101922161Not Available554Open in IMG/M
3300009500|Ga0116229_10490459All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1018Open in IMG/M
3300009635|Ga0116117_1100264Not Available725Open in IMG/M
3300009638|Ga0116113_1126095Not Available630Open in IMG/M
3300009697|Ga0116231_10516857Not Available654Open in IMG/M
3300009709|Ga0116227_10520644All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium903Open in IMG/M
3300010343|Ga0074044_10501196Not Available793Open in IMG/M
3300014156|Ga0181518_10252742Not Available894Open in IMG/M
3300014162|Ga0181538_10359938Not Available781Open in IMG/M
3300014165|Ga0181523_10630744Not Available588Open in IMG/M
3300014168|Ga0181534_10257241Not Available929Open in IMG/M
3300014169|Ga0181531_10001090All Organisms → cellular organisms → Bacteria17460Open in IMG/M
3300014169|Ga0181531_10103635All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1701Open in IMG/M
3300014199|Ga0181535_10769904Not Available546Open in IMG/M
3300014200|Ga0181526_10254076All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1121Open in IMG/M
3300014201|Ga0181537_10192658All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1401Open in IMG/M
3300014492|Ga0182013_10008851All Organisms → cellular organisms → Bacteria10747Open in IMG/M
3300014493|Ga0182016_10001367All Organisms → cellular organisms → Bacteria → Proteobacteria29761Open in IMG/M
3300014493|Ga0182016_10381767Not Available839Open in IMG/M
3300014495|Ga0182015_10003084All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria19098Open in IMG/M
3300014495|Ga0182015_10075852All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2373Open in IMG/M
3300014657|Ga0181522_10495505All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium736Open in IMG/M
3300014838|Ga0182030_10000278All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria90955Open in IMG/M
3300014838|Ga0182030_10002852All Organisms → cellular organisms → Bacteria → Proteobacteria36792Open in IMG/M
3300014838|Ga0182030_10037517All Organisms → cellular organisms → Bacteria8229Open in IMG/M
3300016728|Ga0181500_1320940All Organisms → cellular organisms → Bacteria1421Open in IMG/M
3300016730|Ga0181515_1469776Not Available708Open in IMG/M
3300016750|Ga0181505_11064800Not Available543Open in IMG/M
3300017943|Ga0187819_10055546All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2351Open in IMG/M
3300017943|Ga0187819_10113233All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1620Open in IMG/M
3300017946|Ga0187879_10295884Not Available900Open in IMG/M
3300017948|Ga0187847_10862641Not Available514Open in IMG/M
3300017955|Ga0187817_10010788All Organisms → cellular organisms → Bacteria5236Open in IMG/M
3300017972|Ga0187781_10006745All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria8445Open in IMG/M
3300018006|Ga0187804_10215384All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium823Open in IMG/M
3300018030|Ga0187869_10289146Not Available789Open in IMG/M
3300018033|Ga0187867_10323610Not Available860Open in IMG/M
3300018044|Ga0187890_10215230Not Available1087Open in IMG/M
3300018085|Ga0187772_10332931Not Available1046Open in IMG/M
3300018086|Ga0187769_10739277Not Available744Open in IMG/M
3300020582|Ga0210395_10626749All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium806Open in IMG/M
3300020583|Ga0210401_10128494All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2376Open in IMG/M
3300020583|Ga0210401_10638905Not Available926Open in IMG/M
3300021180|Ga0210396_10289760All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1451Open in IMG/M
3300021181|Ga0210388_10466363Not Available1109Open in IMG/M
3300021181|Ga0210388_11255946Not Available627Open in IMG/M
3300021406|Ga0210386_11141431Not Available660Open in IMG/M
3300021420|Ga0210394_10598313Not Available969Open in IMG/M
3300021433|Ga0210391_10952501Not Available669Open in IMG/M
3300027168|Ga0208239_1021306Not Available622Open in IMG/M
3300027692|Ga0209530_1035973All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1469Open in IMG/M
3300027767|Ga0209655_10081259Not Available1078Open in IMG/M
3300027812|Ga0209656_10247537Not Available844Open in IMG/M
3300027824|Ga0209040_10342884Not Available712Open in IMG/M
3300027857|Ga0209166_10338779All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium787Open in IMG/M
3300027869|Ga0209579_10350660Not Available798Open in IMG/M
3300027869|Ga0209579_10776859Not Available517Open in IMG/M
3300028747|Ga0302219_10454967Not Available503Open in IMG/M
3300028783|Ga0302279_10124362Not Available1321Open in IMG/M
3300028789|Ga0302232_10085612All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1625Open in IMG/M
3300028813|Ga0302157_10260714All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium964Open in IMG/M
3300029883|Ga0311327_10880060Not Available518Open in IMG/M
3300029911|Ga0311361_10166323All Organisms → cellular organisms → Bacteria2832Open in IMG/M
3300029911|Ga0311361_11459869Not Available520Open in IMG/M
3300029913|Ga0311362_11046023Not Available631Open in IMG/M
3300029922|Ga0311363_11519905Not Available535Open in IMG/M
3300030399|Ga0311353_11016447Not Available693Open in IMG/M
3300030503|Ga0311370_10021151All Organisms → cellular organisms → Bacteria9979Open in IMG/M
3300030503|Ga0311370_10068761All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans5126Open in IMG/M
3300030520|Ga0311372_10008562All Organisms → cellular organisms → Bacteria → Proteobacteria22817Open in IMG/M
3300030520|Ga0311372_13021464Not Available508Open in IMG/M
3300030737|Ga0302310_10252798All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1008Open in IMG/M
3300030737|Ga0302310_10674444Not Available539Open in IMG/M
3300031090|Ga0265760_10141076Not Available785Open in IMG/M
3300031236|Ga0302324_100035728All Organisms → cellular organisms → Bacteria9260Open in IMG/M
3300031236|Ga0302324_100587033All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1601Open in IMG/M
3300031236|Ga0302324_101129934All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1051Open in IMG/M
3300031524|Ga0302320_10112903All Organisms → cellular organisms → Bacteria4294Open in IMG/M
3300031708|Ga0310686_100173655All Organisms → cellular organisms → Bacteria7570Open in IMG/M
3300031708|Ga0310686_103642896Not Available907Open in IMG/M
3300031708|Ga0310686_109608422Not Available1121Open in IMG/M
3300031708|Ga0310686_113069262Not Available737Open in IMG/M
3300031708|Ga0310686_118772230All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1475Open in IMG/M
3300031715|Ga0307476_10958329Not Available631Open in IMG/M
3300031823|Ga0307478_10017215All Organisms → cellular organisms → Bacteria → Acidobacteria5054Open in IMG/M
3300031823|Ga0307478_11715866Not Available517Open in IMG/M
3300032783|Ga0335079_10075929All Organisms → cellular organisms → Bacteria3822Open in IMG/M
3300032895|Ga0335074_10023778All Organisms → cellular organisms → Bacteria8649Open in IMG/M
3300032898|Ga0335072_10158501All Organisms → cellular organisms → Bacteria2761Open in IMG/M
3300033134|Ga0335073_10027259All Organisms → cellular organisms → Bacteria → Proteobacteria7882Open in IMG/M
3300033134|Ga0335073_11376497Not Available691Open in IMG/M
3300034124|Ga0370483_0195724All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium687Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa11.54%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog9.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.65%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland7.69%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog6.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.77%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil5.77%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog5.77%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.77%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil4.81%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.81%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.85%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.85%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.88%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.88%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated2.88%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.92%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.92%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.96%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.96%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001131Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300009638Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10EnvironmentalOpen in IMG/M
3300009697Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016728Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016730Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300027168Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028747Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028783Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3EnvironmentalOpen in IMG/M
3300028789Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030737Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300034124Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12631J13338_103216713300001131Forest SoilMLLLAFIAHLIPVRALETDQGPNHANPVLGHLGLTIIALVYVLIVMWQN*
JGIcombinedJ26739_10035112713300002245Forest SoilMLLLALIARLLPVPAEQPDQGALPLNPAIGHLGLTIIALVYVLVVMWRG*
Ga0062387_10020076413300004091Bog Forest SoilMLLLAAIARLIPSRPQPENGLAQPTAALGHLGLTIIALIYVLITVWQG*
Ga0062386_10016266433300004152Bog Forest SoilMLLLAAIAHLTPARVQQPDQGPLQANPELGHLSLTIVALVYVLIIVWQG*
Ga0070731_1045100423300005538Surface SoilMLLLAAIAHFIPGRARTSEEGAVALNPAIGHIGLTIIALIYVLVVMWRS*
Ga0070731_1051310623300005538Surface SoilMLLLAAIAHFIPGRARTSEEGAVALNPAIGHIGLTVIALVYVLIVMWRG*
Ga0070733_1102702813300005541Surface SoilMLLLATIAHFIPGRAQQSEERALALNPAIGHIGLTLIALVYVLIVMWRG*
Ga0070761_1031101223300005591SoilMLLLALIARLLPVPAEQPDQGALPLHPAIGHLGLTIIALVYVLVVMWRG*
Ga0070762_1086624123300005602SoilMLLLSAIAHLMPVREQQPEQGLLQSNPALGHLGLTIIALVYVLIILWQS*
Ga0070763_1087092923300005610SoilVLLLAAIAHFIPGRAQQSEEGALALNPAIGHIGLTIIALVYVLIVMWQG*
Ga0070764_1096871123300005712SoilMLLLAAIAHLIPLRAQQPDQGPNHLNPILGHLGLTVIALVYVLVIMWQN*
Ga0070764_1111005913300005712SoilMLLLATIAHLIPSRAQQSEERALPLNPAVGHIGLTIIALVYVLIVMWQA*
Ga0070765_10192216113300006176SoilIARLMPWPAEQPDQGSLPWYPAIGHLGLTIIALVYVLVVMWQA*
Ga0116229_1049045923300009500Host-AssociatedMLPLALIARLLPVPAEQPDQGALPLTSAIGHLGLTIIALVYVLCVMWRG*
Ga0116117_110026413300009635PeatlandMLLLAAIAHLMPFRAPEPDQGPNHVNPVLGHVGLTIIALVYVLVVMWQN*
Ga0116113_112609523300009638PeatlandMLLLAAIAHLVPIRALEPDQGPSHVNPVLGHLGLTIIALVYVLVVMWQN*
Ga0116231_1051685723300009697Host-AssociatedMLPLALIAPLLPVPAEQPDRGSLPLTSAIGHLGLTIIALVYVLCVMWRG*
Ga0116227_1052064413300009709Host-AssociatedMLLLAAIAHFTPGRAQQSQEGALALNPAIGHIGLLIIALVYVLIVMWQG*
Ga0074044_1050119623300010343Bog Forest SoilMLLLSAIAHFVPAPARQPDQGLLQSNPAIGHLGLTIIALVYVLISVWQG*
Ga0181518_1025274223300014156BogMLLLAAIDHLMPARAHPPDQALVRTNTAIGHVGLTIIALVYVLITLWQS*
Ga0181538_1035993823300014162BogMLLLALIARLMPYPAEQPDQGTLPWYPPLGHLGLTVIALVYVLVVMWQA*
Ga0181523_1063074413300014165BogMLLLAAIAHVLPPPAQQTDQGLTQLNPAIGHLGLTIIALVYVLISVWQG*
Ga0181534_1025724123300014168BogMLLLAAISRLTPVRAQQPDQGPSNVNPVLGHLGLTIIALVYVLVIMWQN*
Ga0181531_1000109043300014169BogMLLLAAIAHFMPAPATQPSQGMMQANPALGHLSLTIIALIYVLLSVWQS*
Ga0181531_1010363543300014169BogMLLLALIARLMPWPAEQPDQGSLPWYPAIGHLGLTVIALVYVLVVMWQA*
Ga0181535_1076990423300014199BogMLPLALIARLLPVPAEQPDKGALPLTSAIGHLGLTIIALVYVLCVMWRG*
Ga0181526_1025407633300014200BogMLLLSAIAHLMPVRAQQTEQGLLQSNPALGHLGLTIIALVYVLIILWQS*
Ga0181537_1019265823300014201BogMLLLALIARLLPVPAEQPDQGALPLNPAIGHVGLTIIALVYVLVVMWRG*
Ga0182013_1000885163300014492BogMLLLAAIAHLMPFRAPEPDQGPNQVNPVLGHVGLTIIALVYVLVVMWQN*
Ga0182016_1000136783300014493BogMLSLAAIAHLVPVRALEPDQGPAHVNPVLGHLGLTIIALVYVLVVMWQN*
Ga0182016_1038176723300014493BogMLLLAAIAHLMPFRAPEPDQGPNHVNPVLGHVGLTIIALVYVLVVMWQT*
Ga0182015_10003084153300014495PalsaMLLLAAIAHLIPFRALKPDQGPNYLHPLLGHAGLTVIALVYVLIVMWQN*
Ga0182015_1007585233300014495PalsaMLLLALIARLLPVPAEQPDQGALPLNPAIGHLGLTIIALVYVLVVLWRG*
Ga0181522_1049550523300014657BogMLLLALIARLLPVPAEQPDQGALPLHPAVGHVGLTIIALVYVLVVMWRG*
Ga0182030_10000278503300014838BogMLLLAAIAHLVPLRALEPDQGPTYVNPVLGHLGLTIIALVYVLVIMWQN*
Ga0182030_10002852143300014838BogMLLLAAIAHLIPARARQSEEGAVALNPAVGHIGLTIIALVYVLIVMWQA*
Ga0182030_1003751753300014838BogMLLLAAIAHLVPIRALEPDQGPSHVNPVLGHLGLTIIALVYVLVVMWQS*
Ga0181500_132094033300016728PeatlandMLPLALIARLLPVPAEQPDKGALPLTSAIGHLGLTIIALVYVLCVMWRG
Ga0181515_146977613300016730PeatlandIVMLLLAAIDHLMPARAHPPDQALVRTNTAIGHVGLTIIALVYVLITLWQS
Ga0181505_1106480023300016750PeatlandMLLLSAIAHLMPVRAQQTEQGLMQSNPALGHLGLTIIALVYVLIILWQS
Ga0187819_1005554633300017943Freshwater SedimentMLLLAAISHLIPAPAQQPDQGLMQSNPAIGHLGLTIIALVYVLITLWQS
Ga0187819_1011323333300017943Freshwater SedimentMLFLAAIAHLTPARVHQPDQGPLQANPELGHLSLTIVALVYVLVTVWRG
Ga0187879_1029588423300017946PeatlandMLLLAIIAHLIPTRAQQPDQGPNYANPILGHVGLTIIALVYVLIVMWQN
Ga0187847_1086264113300017948PeatlandMLLLALIARLMPYPAEQPDQGTLPWYPALGHLGLTVIALVYVLVVMWQG
Ga0187817_1001078863300017955Freshwater SedimentMLLLAAISHLIPAPAQQPNQGLMQSNPAIGHLGLTIIALVYVLITLWQS
Ga0187781_10006745123300017972Tropical PeatlandMLLLAAITRLAPDRAQHLGSWQSNPALGHLGLTIIALVYVLIIMWQV
Ga0187804_1021538423300018006Freshwater SedimentMLLLAAISHLIPAPAQQPDQGLMQSNPAIGHLSLTIIALVYVLITLWQS
Ga0187869_1028914623300018030PeatlandMLLLAAIDHLMPARAHPPDQALVRTNTAIGHVGLTIIALVYVLITLWQS
Ga0187867_1032361023300018033PeatlandMLLLALIARLMPYPAEQPDQGTLPWYPALGHLGLTVIALVYVLVVMWQA
Ga0187890_1021523023300018044PeatlandMLLLAAIAHLMPFRAPEPDQGPNHVNPVLGHVGLTIIALVYVLVVMWQN
Ga0187772_1033293123300018085Tropical PeatlandMLLLAAIAPLIPGRAQYTDDGFLSFNPALGHLGLTIIALVYVLVIMWQ
Ga0187769_1073927723300018086Tropical PeatlandWGQWPKEVRMLSLAAIDHFMPARAHPPDRTLVRTNPAMGHVGLTIIALVYVLITLWQS
Ga0210395_1062674913300020582SoilCTEASMLLLALIARLLPVPAEQPDQGALPLHPAIGHLGLTIIALVYVLVVMWRG
Ga0210401_1012849423300020583SoilMLLLAAIAHFIPGRAQQSEEGALALNPAIGHIGLTIIALVYVLIVMWRG
Ga0210401_1063890523300020583SoilMLLLALIARLLPVPAEQPDQGALPLHPAIGHLGLTIIALVYVLVVMWRG
Ga0210396_1028976023300021180SoilMLLLALIARLSPVPAEQPDQGALPLHPAIGHLGLTIIALVYVLVVMWRG
Ga0210388_1046636323300021181SoilMLLLAVIAHLIPVRALETDQGPNHVNPALGHLGLTIIALVYVLVVMWQN
Ga0210388_1125594623300021181SoilMLLLAAIAHFIPGRAQQSEEGALALNPAIGHIGLTIIALVYVLIVMWQG
Ga0210386_1114143123300021406SoilMLLLAFISHLMPFRAQRADQAALPMHAALGHLGLTIIALVYVLIVMWQN
Ga0210394_1059831323300021420SoilMLLLSAIAHLMPVREQQPEQGLLQSNPALGHLGLTIIALVYVLIILWQS
Ga0210391_1095250113300021433SoilMLLLSLIARLMPCPAEQPDQGSLPWYPAIGHLGLTIIALVYVLVVMWQA
Ga0208239_102130613300027168Forest SoilMLLLALIARLLPVPAEQPDQGALPLHPVIGHLGLTIIALVYVLVVMWRG
Ga0209530_103597323300027692Forest SoilMLLLAFIAHLIPVRALETDQGPNHANPVLGHLGLTIIALVYVLIVMWQN
Ga0209655_1008125923300027767Bog Forest SoilMLLLALIAPLMPCPAEQPDQGSLPWYPAIGHLGLTIIGLVYVLVVMWQA
Ga0209656_1024753723300027812Bog Forest SoilMLLLAAIAHLTPARVQQPDQGPLQANPELGHLSLTIVALVYVLIIVWQG
Ga0209040_1034288413300027824Bog Forest SoilMLLLAAIAHLTPARVQQPDQGPLQANPELGHLSLTIV
Ga0209166_1033877923300027857Surface SoilRPAMLLLAAIAHFIPGRARTSEEGAVALNPAIGHIGLTIIALIYVLVVMWRS
Ga0209579_1035066023300027869Surface SoilMLLLAAIAHFIPGRARTSEEGAVALNPAIGHIGLTVIALVYVLIVMWRG
Ga0209579_1077685923300027869Surface SoilMLLLAAIAHFIPGRARTSEEGAVALNPAIGHIGLTIIALIYVLVVMWRS
Ga0302219_1045496723300028747PalsaMLLLALIARLLPFPAEQPDQGALPLNPAVGHLGLTIIALVYVLVVMWRG
Ga0302279_1012436213300028783BogMLLLAAIAHLMPFRAPEPDQGPNQVNPVLGHVGLTIIALVYVLVVMWQN
Ga0302232_1008561223300028789PalsaMLLLALIARLMPWPAEQPDQGSLPWYPAIGHLGLTIIALVYVLVVMWQA
Ga0302157_1026071413300028813BogMLLLAAIAHLMPLRALEPDQGPSHVNPVLGHVGLTIIALVYVLVVMWQN
Ga0311327_1088006023300029883BogRCVMLLLAAIAHLIPCRTQQPDQGTLQFHSALGHLGLTIIALVYVLIVMWQA
Ga0311361_1016632343300029911BogMLLLAAIAHLIPCRTQQPDQGTLQFHSALGHLGLTIIALVYVLIVMWQA
Ga0311361_1145986923300029911BogMLLLALIARLLPVPAEQPDQGALPLNPAIGHLGLTIIALVYVLCVM
Ga0311362_1104602323300029913BogMLLLAAIAHLVPIRALEPDQGPSHVNPVLGHLGLTIIALVYVLVVMWQS
Ga0311363_1151990513300029922FenMLLLAAIAHLVPIRALEPDQGPSHVNPVLGHLGLTIIALVYVLVV
Ga0311353_1101644723300030399PalsaMLLLALIARLMPWPAEQPDQGSLPWYPAIGHLGLTIIALVYVLVVMWQV
Ga0311370_1002115143300030503PalsaMLLLALIARLLPVPAEQPDQGALPLNPAIGHLGLTIIALVYVLVVMWRG
Ga0311370_1006876173300030503PalsaMLLLALIARLLPFPAEQPDQGALPLNPAVGHLGLTIIALV
Ga0311372_10008562143300030520PalsaMLLLALIARLMPCPAEQPNQGTLPWYPAMGHLGLTVIALVYVLVVMWQT
Ga0311372_1302146423300030520PalsaMLLLSLIARLLPVPAEQPDQGALPLNPAIGHLGLTIIALVYVLVVMWRG
Ga0302310_1025279813300030737PalsaMLLLALIARLLPFPAEQPDQGALPLNPAVGHLGLTI
Ga0302310_1067444413300030737PalsaMLLLALIARLLPVPAEQPDQGALPLNPAIGHLGLTIIALV
Ga0265760_1014107623300031090SoilMLLLALIARLLPVPAEQPDQGALPLHPAIGHLGLTIIALVYVLVVMWRA
Ga0302324_10003572843300031236PalsaMLLLALIARLLPVPTEQPDQGALPLNPAIGHLGLTIIALVYVLVVMWRG
Ga0302324_10058703323300031236PalsaMLLLAAIAHLIPARAQRSEEGAVALNPALGHLGLTIIALVYVLIVMWQS
Ga0302324_10112993413300031236PalsaMLLLSAIAPLLPCRAERPDQAMLPLHSAVGHLGLTIIALVYVLVVMWRG
Ga0302320_1011290333300031524BogMLLLAAIAHLVPIRALEPDQGPSHVNPVLGHLGLTIIALVYVLVVMWQN
Ga0310686_10017365563300031708SoilMLLLAAIAHLIPLRAQQPDQGPSHVNPILGHLGLTVIALVYVLVIMWQN
Ga0310686_10364289623300031708SoilMLLLAAIAHLIPVRALETDQGPNHVNPVLGHLGLTIIALVYVLIVMWQS
Ga0310686_10960842223300031708SoilMLLLALIARLLPVPAEQPDQGALPLHPAVGHLGLTIIALVYVLVVMWRG
Ga0310686_11306926223300031708SoilMLLLALIARLLPVPAEQPDQGALPLNPAVGHLGLTIIALVYVLVVMWRG
Ga0310686_11877223023300031708SoilMLLLAAIAHLIPGRAQQSEEGALALNPAIGHIGLTIIALVYVLIVMWQG
Ga0307476_1095832913300031715Hardwood Forest SoilMLLLATIAHFIPGRAQQSEERALALNPAIGHIGLTIIALVYVLIVMWRG
Ga0307478_1001721523300031823Hardwood Forest SoilMLLLALIARFMPCPAEQPDQGTLPWYPALGHLGLTVIALVYVLVVMWQA
Ga0307478_1171586623300031823Hardwood Forest SoilMLLLAAIAHFIPGRAQQSEEEALALNPAIGHIGLTVIALVYVLIVMWQG
Ga0335079_1007592953300032783SoilMLLLAAIDQLLPGRAAKADESLVRVHAAVGHLGLTIIALVYVLIIMWQG
Ga0335074_1002377843300032895SoilMLLLAAIAHLMPGRAEQPDQGALPLHPAVGHLGLTIIALVYVLIVMWQG
Ga0335072_1015850143300032898SoilMLLLAVISHLIPWRAQQSDQGTVYANSALGHLGLTIIALVYVLIVMWQG
Ga0335073_1002725993300033134SoilMLLLAAIAHFIPGRAQRSEDEAVALNPAIGHIGLTIIALVYLLVVMWRS
Ga0335073_1137649713300033134SoilMLLLSLISHLIPCRAQQSDQGTVYANSVLGHLGLTIIALVYVLIIMWQG
Ga0370483_0195724_2_1333300034124Untreated Peat SoilIAHLVPIRALEPDQGPSHVNPVLGHLGLTIIALVYVLVVMWQN


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