Metagenome Family F097685

Basic Information
Family ID	F097685
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	61 residues
Representative Sequence	MEERRGRSRTPLRLILTAILITSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Number of Associated Samples	96
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.423 % of family members)
Environment Ontology (ENVO)	Unclassified (35.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.692 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 75.38% β-sheet: 0.00% Coil/Unstructured: 24.62%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13478	XdhC_C	25.96
PF02625	XdhC_CoxI	19.23
PF10604	Polyketide_cyc2	6.73
PF12804	NTP_transf_3	1.92
PF04945	YHS	1.92
PF08309	LVIVD	1.92
PF02502	LacAB_rpiB	0.96
PF13847	Methyltransf_31	0.96
PF13278	Obsolete Pfam Family	0.96
PF02133	Transp_cyt_pur	0.96
PF02272	DHHA1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1975	Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family	Posttranslational modification, protein turnover, chaperones [O]	19.23
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	1.92
COG0698	Ribose 5-phosphate isomerase RpiB	Carbohydrate transport and metabolism [G]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.27%
Host-Associated	Host-Associated	31.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.42%
Plants	Host-Associated → Plants	31.73%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.46%
Sediment	Environmental → Aquatic → Sediment	2.88%
Roots	Host-Associated → Plants → Roots	2.88%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.04%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Fossil	Environmental → Terrestrial → Soil → Fossil	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Soil → Fossil → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Fossill	Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015170	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1017945151	3300004114	Soil	MEERRSRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIR
Ga0063356_1006427163	3300004463	Arabidopsis Thaliana Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTG*
Ga0066680_100653333	3300005174	Soil	MIEERRSRSRTPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTT*
Ga0066673_106902272	3300005175	Soil	TSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTER*
Ga0066673_108463711	3300005175	Soil	MEERRRRSRTPLRLILTAILVTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTEG*
Ga0066676_104954751	3300005186	Soil	TSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0070676_102716442	3300005328	Miscanthus Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0070690_1002783522	3300005330	Switchgrass Rhizosphere	MEERRGRSRTPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0070690_1009598211	3300005330	Switchgrass Rhizosphere	LTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0068869_1006971132	3300005334	Miscanthus Rhizosphere	MEERRGRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0070680_1011188761	3300005336	Corn Rhizosphere	RSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0070660_1009045042	3300005339	Corn Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0070667_1008644152	3300005367	Switchgrass Rhizosphere	MEERRGRSRLPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0070705_1014246821	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDERRSRSRLPLRLILTAIIITVALWLGELYMAPTWDKIRAFLLGYFLGSFTMEWIRTRASRETTVERS*
Ga0070700_1002216151	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	LTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0070700_1009250901	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MEERRGRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQ
Ga0070708_1014847551	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVEEERRRRSRTPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTT*
Ga0066689_102912062	3300005447	Soil	TAILITSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0070662_1002722423	3300005457	Corn Rhizosphere	PLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0070707_1019524192	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MEERRGRSRLPLKLILFAILATSALWLAELYTHPTWDKIRSLLLGYFLGTFIMEWIRQRADRGELGAATSQP
Ga0070699_1004678982	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MEERRGRSRTPLRLILTAILITSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0066704_100057401	3300005557	Soil	ERRSRSRTPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTT*
Ga0070664_1021897701	3300005564	Corn Rhizosphere	MEERRGRSRTPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0066705_100225602	3300005569	Soil	MVEERRRRSRTPLRLILTAILITSALWLGELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTSD*
Ga0068854_1003271103	3300005578	Corn Rhizosphere	MEERRGRSRLPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRS
Ga0068861_1003236041	3300005719	Switchgrass Rhizosphere	AILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0066903_1059864442	3300005764	Tropical Forest Soil	MEERRRRSRTPLRLVLTAILITSALWLAELYMQPTWTKIRSFVLGYFLGTFTMEWIRQRSDRMPEEEESERMTT*
Ga0068858_1017466651	3300005842	Switchgrass Rhizosphere	SDFMEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0068860_1026366302	3300005843	Switchgrass Rhizosphere	LRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0075417_104055892	3300006049	Populus Rhizosphere	MEERRSRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0075362_100055127	3300006177	Populus Endosphere	ALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0075370_104045262	3300006353	Populus Endosphere	MEERRGRSRLPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQ
Ga0068871_1002336651	3300006358	Miscanthus Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQ
Ga0075421_1001316822	3300006845	Populus Rhizosphere	MEERRGRSRLPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERTTE*
Ga0075421_1015857141	3300006845	Populus Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMT
Ga0075425_1027187802	3300006854	Populus Rhizosphere	MEERRGRSRTPLRIILTAILITSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0079215_108167231	3300006894	Agricultural Soil	MEDERRSRSRWPLRIILTVIFVVSALWLGELYMQPTWSKIRSFILGYFLGPFVMEWVHQRASRETVEEVVVKAP*
Ga0075424_1003002362	3300006904	Populus Rhizosphere	MEERRGRSRTPLRIILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0075424_1006991411	3300006904	Populus Rhizosphere	MEERRGRSRLPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIR
Ga0079216_102361862	3300006918	Agricultural Soil	MDDDRRSRSRAPLRIILTVIFVVTALWLAELYMDPTWQKIRSFILGYFLGTFVMEWVHQRASREVDATP*
Ga0079216_110549222	3300006918	Agricultural Soil	MEERRGRSRLPLRLILTAILITSALWLGELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERTTT*
Ga0075419_100857252	3300006969	Populus Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0099829_103146013	3300009038	Vadose Zone Soil	MVEERRSRSRTPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0099827_103662072	3300009090	Vadose Zone Soil	MVEERRARSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0075418_108967342	3300009100	Populus Rhizosphere	LTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0066709_1006536281	3300009137	Grasslands Soil	ELAYPGGMEERRSRSRVPLKLILTAILITTALWLGELYMQPTWTKIRSFLLGYFLGSFTMEWIRQRSERMTDT*
Ga0099792_110593602	3300009143	Vadose Zone Soil	MEERRGRSRTPLRIILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0134127_108534132	3300010399	Terrestrial Soil	METAIDERRARSRAPLKIILTAILLASALWVMELYMAPTWPKIRSFVLGYFLGSFVMTWIHQRASRSTP*
Ga0134122_124418581	3300010400	Terrestrial Soil	MEERRSRSRTPLRLILTAILITSALWLTELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMT*
Ga0134121_103387661	3300010401	Terrestrial Soil	MEERRGRSRTPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWI
Ga0134123_117852043	3300010403	Terrestrial Soil	MEERRGRSRTPLRLILTAILITSALWLTELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0137391_113428792	3300011270	Vadose Zone Soil	MVEERRARSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMST*
Ga0137388_105727082	3300012189	Vadose Zone Soil	MVEERRSRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0137365_102200452	3300012201	Vadose Zone Soil	MEERRGRSRTPLRIILTAILITSVLWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0137363_107218642	3300012202	Vadose Zone Soil	MIEERRSRSRIPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTT*
Ga0137374_104996392	3300012204	Vadose Zone Soil	MEERRGRSRTPLRIILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0150985_1224078001	3300012212	Avena Fatua Rhizosphere	LRIILTAILITSALWLAELYMQPTWSKIRSFVLGYFLGSFTMEWVRQRAARMTDG*
Ga0137366_107583282	3300012354	Vadose Zone Soil	MEDRRRRSRTPLRLILTAIFITTSLWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMST*
Ga0157293_101657561	3300012898	Soil	MEERRSRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0157308_100441853	3300012910	Soil	RTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0157306_102445862	3300012912	Soil	LILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE*
Ga0157310_105426552	3300012916	Soil	RSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFAGTFINEWVHQRSSRTVEVVAKQP*
Ga0137410_103320862	3300012944	Vadose Zone Soil	MEERRGRSRTPLRLILTAILITSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0164299_112381891	3300012958	Soil	LTAILATSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE*
Ga0163162_104876662	3300013306	Switchgrass Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTD*
Ga0120098_10648242	3300015170	Fossill	LILLAIVVTVVLWLAELYMLPTWDKIRSFLLGYFLGSFTMEWIRQRAARDIP*
Ga0137409_106220972	3300015245	Vadose Zone Soil	MEERRGRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS*
Ga0184620_102948562	3300018051	Groundwater Sediment	MEERRGRSRLPLRLILTAILITSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0184637_102783931	3300018063	Groundwater Sediment	LILTAIFITVALWLGELYMAPTWDKIRAFLLGYFLGSFTMEWIRTRAGREPAEERELSPQRR
Ga0190270_122930531	3300018469	Soil	VWLTELYMQPTWPKIRSFVLGYFVGSFTMEWIRQRAERMTDPLPRPPSLV
Ga0193744_10466002	3300019874	Soil	MEERRGRSRLPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0193716_11503582	3300020061	Soil	MEERRGRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0210382_101572622	3300021080	Groundwater Sediment	MEERRSRSRLPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0224452_11781372	3300022534	Groundwater Sediment	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0207697_105612662	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0207680_111290531	3300025903	Switchgrass Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIR
Ga0207684_101595542	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MVEEERRRRSRTPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTT
Ga0207660_110037191	3300025917	Corn Rhizosphere	RSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0207689_102387892	3300025942	Miscanthus Rhizosphere	MEERRGRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0207640_101790413	3300025981	Corn Rhizosphere	MEERRGRSRLPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0207675_1007137831	3300026118	Switchgrass Rhizosphere	ILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0209240_10198061	3300026304	Grasslands Soil	MEERRGRSRTPLRIILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0209131_14020872	3300026320	Grasslands Soil	MEERRGRSRTPLRIILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRS
Ga0209802_10262483	3300026328	Soil	MIEERRSRSRTPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTT
Ga0209161_100886241	3300026548	Soil	LILTAILITSALWLGELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTSD
Ga0209180_101723783	3300027846	Vadose Zone Soil	MVEERRSRSRTPLRLILTAILITSALWLAELYMAPSWMKIRSFVLGYFLGSFTMEWIRQRSERMTS
Ga0209814_103211322	3300027873	Populus Rhizosphere	MEERRSRSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS
Ga0209590_105543521	3300027882	Vadose Zone Soil	TAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS
Ga0209590_107961232	3300027882	Vadose Zone Soil	MVEERRARSRTPLRLILTAILITSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTS
Ga0209590_108885571	3300027882	Vadose Zone Soil	LYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0209382_107089313	3300027909	Populus Rhizosphere	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRA
Ga0268265_117028262	3300028380	Switchgrass Rhizosphere	RTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0268264_101624551	3300028381	Switchgrass Rhizosphere	GRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0307282_105031232	3300028784	Soil	MEERRGRSRTPLRLILTAILITSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0307304_103050292	3300028885	Soil	LPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0307497_102848921	3300031226	Soil	AILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRAERMTE
Ga0310887_101671541	3300031547	Soil	DFMEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0307468_1003451762	3300031740	Hardwood Forest Soil	MEERRGRSRTPLRLILTAILFTSALWLAELYMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0310891_100150373	3300031913	Soil	GRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0307471_1010682212	3300032180	Hardwood Forest Soil	MEERRGRSRTPLRLILTAIFITSALWLAELNMQPTWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0307472_1015411542	3300032205	Hardwood Forest Soil	MEERRGRSRTPLRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTEG
Ga0310810_110347781	3300033412	Soil	MEERRGRSRTPLRIILTAILITSALWLAELYMQPSWTKIRSFLLGYFLGSFTMEWIRQRSERMTE
Ga0247829_116000542	3300033550	Soil	LRLILTAILTTSALWLAELYMQPSWTKIRSFVLGYFLGSFTMEWIRQRSERMTE
Ga0364943_0357331_2_184	3300034354	Sediment	MQGPERRGRSRAPLKLIMTAVLIGCALWLAELYADPTWAKIRSFLLGYFLGTFVMEWIWQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097685

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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