Metagenome / Metatranscriptome Family F097674

Basic Information
Family ID	F097674
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	78 residues
Representative Sequence	MSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNGRGDLEMVVRETLEALALG
Number of Associated Samples	82
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.50 %
% of genes near scaffold ends (potentially truncated)	31.73 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.86

Most Common Taxonomy
Group	Bacteria (72.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (7.692 % of family members)
Environment Ontology (ENVO)	Unclassified (39.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.923 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.81% β-sheet: 0.00% Coil/Unstructured: 45.19%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
a.24.25.1: TrmE connector domain	d1xzpa1	1xzp	0.72626
a.24.18.1: Oxygen-evolving enhancer protein 3,	d1nzea_	1nze	0.70332
a.24.3.0: automated matches	d6a3ka_	6a3k	0.6993
a.24.28.0: automated matches	d2j9wa1	2j9w	0.69852
a.24.3.2: Cytochrome c'-like	d2ykza_	2ykz	0.69023

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01872	RibD_C	36.54
PF00677	Lum_binding	26.92
PF00834	Ribul_P_3_epim	7.69
PF02156	Glyco_hydro_26	4.81
PF00925	GTP_cyclohydro2	3.85
PF00926	DHBP_synthase	2.88
PF08447	PAS_3	2.88
PF00486	Trans_reg_C	1.92
PF01189	Methyltr_RsmB-F	0.96
PF13570	PQQ_3	0.96
PF01327	Pep_deformylase	0.96
PF02911	Formyl_trans_C	0.96
PF14579	HHH_6	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	36.54
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	36.54
COG0307	Riboflavin synthase alpha chain	Coenzyme transport and metabolism [H]	26.92
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	7.69
COG4124	Beta-mannanase	Carbohydrate transport and metabolism [G]	4.81
COG0807	GTP cyclohydrolase II	Coenzyme transport and metabolism [H]	3.85
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	2.88
COG0144	16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family	Translation, ribosomal structure and biogenesis [J]	0.96
COG0223	Methionyl-tRNA formyltransferase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.12 %
Unclassified	root	N/A	27.88 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.69 %
Unclassified	root	N/A	27.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.00 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.77 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5.77 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	4.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.88 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.88 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573002\|GZIGXIF02HSXEQ	Not Available	515	Open in IMG/M
3300000956\|JGI10216J12902_101225138	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300000956\|JGI10216J12902_107788560	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300000956\|JGI10216J12902_109280315	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300004006\|Ga0055453_10145115	Not Available	725	Open in IMG/M
3300004114\|Ga0062593_100065442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2368	Open in IMG/M
3300004463\|Ga0063356_101175910	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300004479\|Ga0062595_100544675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	886	Open in IMG/M
3300004479\|Ga0062595_101799941	Not Available	582	Open in IMG/M
3300005093\|Ga0062594_100109518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1680	Open in IMG/M
3300005093\|Ga0062594_100232050	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300005093\|Ga0062594_100272035	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300005329\|Ga0070683_100000837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	22821	Open in IMG/M
3300005332\|Ga0066388_100568468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1761	Open in IMG/M
3300005332\|Ga0066388_104462068	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300005332\|Ga0066388_106590165	Not Available	585	Open in IMG/M
3300005332\|Ga0066388_108029025	Not Available	528	Open in IMG/M
3300005334\|Ga0068869_100955714	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300005347\|Ga0070668_100397525	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300005354\|Ga0070675_102016319	Not Available	532	Open in IMG/M
3300005440\|Ga0070705_101679153	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005455\|Ga0070663_100378599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1152	Open in IMG/M
3300005456\|Ga0070678_100843019	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300005459\|Ga0068867_101079479	Not Available	732	Open in IMG/M
3300005529\|Ga0070741_10002339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51688	Open in IMG/M
3300005529\|Ga0070741_10008355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	20834	Open in IMG/M
3300005535\|Ga0070684_101336342	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005544\|Ga0070686_101192138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	632	Open in IMG/M
3300005563\|Ga0068855_101252254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	770	Open in IMG/M
3300005563\|Ga0068855_102098789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M
3300005614\|Ga0068856_100689840	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300005614\|Ga0068856_100886688	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300005764\|Ga0066903_100161853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3247	Open in IMG/M
3300005764\|Ga0066903_100166181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3214	Open in IMG/M
3300005842\|Ga0068858_100720269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	971	Open in IMG/M
3300005874\|Ga0075288_1013336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1113	Open in IMG/M
3300005887\|Ga0075292_1073517	All Organisms → cellular organisms → Bacteria → Terrabacteria group	517	Open in IMG/M
3300005889\|Ga0075290_1018846	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300005937\|Ga0081455_10083325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2613	Open in IMG/M
3300005937\|Ga0081455_10830561	Not Available	578	Open in IMG/M
3300006038\|Ga0075365_10292091	All Organisms → cellular organisms → Bacteria → Proteobacteria	1147	Open in IMG/M
3300006051\|Ga0075364_10259927	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300006178\|Ga0075367_10857255	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300006237\|Ga0097621_100310923	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300006581\|Ga0074048_13103459	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300006854\|Ga0075425_100862701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1036	Open in IMG/M
3300006854\|Ga0075425_102176906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	618	Open in IMG/M
3300006854\|Ga0075425_102706860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300006871\|Ga0075434_100492571	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300006881\|Ga0068865_101397073	Not Available	625	Open in IMG/M
3300006904\|Ga0075424_100515726	All Organisms → cellular organisms → Bacteria → Proteobacteria	1277	Open in IMG/M
3300009012\|Ga0066710_100243115	All Organisms → cellular organisms → Bacteria	2598	Open in IMG/M
3300009094\|Ga0111539_11595870	Not Available	757	Open in IMG/M
3300009098\|Ga0105245_10955817	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300009137\|Ga0066709_100566680	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300009162\|Ga0075423_10295459	Not Available	1698	Open in IMG/M
3300009174\|Ga0105241_10769848	Not Available	884	Open in IMG/M
3300009553\|Ga0105249_12844134	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300010043\|Ga0126380_11660702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300010358\|Ga0126370_10413515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1112	Open in IMG/M
3300010359\|Ga0126376_12433103	Not Available	571	Open in IMG/M
3300010362\|Ga0126377_10010759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7137	Open in IMG/M
3300010362\|Ga0126377_11959006	Not Available	662	Open in IMG/M
3300010375\|Ga0105239_11281387	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300010399\|Ga0134127_10315644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1512	Open in IMG/M
3300012204\|Ga0137374_10270519	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300013296\|Ga0157374_11133711	Not Available	803	Open in IMG/M
3300013306\|Ga0163162_10240844	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300013306\|Ga0163162_10631979	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300013308\|Ga0157375_12525917	Not Available	613	Open in IMG/M
3300014301\|Ga0075323_1074458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
3300014314\|Ga0075316_1192908	Not Available	534	Open in IMG/M
3300015371\|Ga0132258_11219002	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300015374\|Ga0132255_105204828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	551	Open in IMG/M
3300017944\|Ga0187786_10240733	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300017944\|Ga0187786_10297026	Not Available	661	Open in IMG/M
3300017966\|Ga0187776_11135267	Not Available	582	Open in IMG/M
3300017974\|Ga0187777_11292134	Not Available	536	Open in IMG/M
3300018056\|Ga0184623_10193232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	937	Open in IMG/M
3300018060\|Ga0187765_10014535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3628	Open in IMG/M
3300018072\|Ga0184635_10203320	Not Available	789	Open in IMG/M
3300024232\|Ga0247664_1005845	All Organisms → cellular organisms → Bacteria	2805	Open in IMG/M
3300025901\|Ga0207688_10661382	Not Available	660	Open in IMG/M
3300025926\|Ga0207659_10787330	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300025927\|Ga0207687_10924243	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300025927\|Ga0207687_11328984	Not Available	618	Open in IMG/M
3300025931\|Ga0207644_11618296	Not Available	543	Open in IMG/M
3300025938\|Ga0207704_10721728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	827	Open in IMG/M
3300025947\|Ga0210067_1019036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	893	Open in IMG/M
3300025949\|Ga0207667_10956621	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300025993\|Ga0208415_1028528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300026035\|Ga0207703_11022751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	793	Open in IMG/M
3300026075\|Ga0207708_10955384	Not Available	743	Open in IMG/M
3300026078\|Ga0207702_10020370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5494	Open in IMG/M
3300026078\|Ga0207702_12313921	Not Available	525	Open in IMG/M
3300026116\|Ga0207674_11988741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300028577\|Ga0265318_10088524	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300028718\|Ga0307307_10277159	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300030336\|Ga0247826_10053737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2265	Open in IMG/M
3300030336\|Ga0247826_10152709	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300032782\|Ga0335082_11127719	Not Available	651	Open in IMG/M
3300033004\|Ga0335084_11264504	Not Available	736	Open in IMG/M
3300033004\|Ga0335084_11548219	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300033551\|Ga0247830_10778312	Not Available	761	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.85%
Host-Associated	Host-Associated	46.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	46.15%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.19%
Roots	Host-Associated → Plants → Roots	3.85%
Marine	Environmental → Aquatic → Marine	1.92%
Sediment	Environmental → Aquatic → Sediment	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.46%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.88%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.81%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.88%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025947	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025993	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE1_02286300	2189573002	Grass Soil	MNPDDRIVTLLSRWLARHLDNVRLREEVEAAGREGLSPAQAEAVDELLAGLGRAGPNDRGDVEVLVRET
JGI10216J12902_1012251381	3300000956	Soil	LARHADNARLRAGIASAGRAGLSVDQCEALDDLVAALDRAGSSGRGDLEMVVRETLEALALG*
JGI10216J12902_1077885602	3300000956	Soil	MPTSMSPEDRLVGLLSRWLAGHLDNTQLRTGIEGAGRHGLSVDQAEALDDLVAALDRAGPSGRGDLEMVVRETLEALALG*
JGI10216J12902_1092803152	3300000956	Soil	MSPEDRLVSLLSHWLARHVGNTELRDGIDAAGREGLSPEQSEAVDELIAELERAGPNGRGDLEMVVRETLEALALG*
Ga0055453_101451152	3300004006	Natural And Restored Wetlands	MSTSPEDRIVTLCSRWLARHLDNAELREAVAAAGTNGLSAGQAEAVDDLLAELAQAAPHERGNVEMTVRETLEALAFG*
Ga0062593_1000654423	3300004114	Soil	MSMSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0063356_1011759103	3300004463	Arabidopsis Thaliana Rhizosphere	WLARHIGNAELHAEIEAAGRDGLSPEQEEALDELLAELERTGPNGRGDLEMVVRETLEALALG*
Ga0062595_1005446752	3300004479	Soil	MSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNGRGDLEMVVRETLEALALG*
Ga0062595_1017999412	3300004479	Soil	MSPEDQIVGLLSRWLARHIDNTELRAGLDAAGRAGLSVEQSDALDELDGELERTGPIGRGDLEMVVRETLEALALS*
Ga0062594_1001095181	3300005093	Soil	SMSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG*
Ga0062594_1002320502	3300005093	Soil	MSPEDQIVGLLSRWLARHIDNTELRTGIDAAGRDGLSAEQSVALGELDRELERAGPTGRGDLEMVVRETLEALALG*
Ga0062594_1002720352	3300005093	Soil	MSPEDRIVTLLSRWLARHLDNVQLREQVVAAGREGLSTDQSEAVDELLDELARAAPNERGDVEVAVRETLEALALG*
Ga0070683_1000008378	3300005329	Corn Rhizosphere	MSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG*
Ga0066388_1005684682	3300005332	Tropical Forest Soil	MSPEDRLVGLLSRWLAGHVDNAQLRAGIEDAGRDGLSADQAEALDDLVTALDRAGPTGRGDLERTVRETLEALALG*
Ga0066388_1044620682	3300005332	Tropical Forest Soil	MPTSSSTPMSMSPEDQIVSLLSHWLARHIGDAQLRAGLAQAGRDGLSEEQLQALDELDAELERTGYTGRGDLEMVVRETLEALALG*
Ga0066388_1065901652	3300005332	Tropical Forest Soil	MSPEDRLVGLLSRWLAGHLDNARLRAEIAETGRDGLSADQSAALDDLVEALERAGPTGRGGLEREVRETLEALALG*
Ga0066388_1080290251	3300005332	Tropical Forest Soil	MSPEDQIVGLLSRWLARHIDNADLRVGMEAAGREGLSPEQDEALDELEEELERTGPTGRGGLEMVVRETLEALALG*
Ga0068869_1009557141	3300005334	Miscanthus Rhizosphere	MFSSMPMSMSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0070668_1003975252	3300005347	Switchgrass Rhizosphere	MPTSMSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNGRGDLEMVVRETLEALALG*
Ga0070675_1020163191	3300005354	Miscanthus Rhizosphere	MSPEDRIVTLLSRWLARHLDNVRLREEIVAAGRDGLSADQEEAVDELLGELERAQPKERGDVE
Ga0070705_1016791532	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSPEDQIVGLLSRWLARHLDNTQLRAGLDVAGCEGLSGEQSDALDELKEELERAGPTGRGDLEMVVRETLEALALG*
Ga0070663_1003785991	3300005455	Corn Rhizosphere	SMPTSMSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG*
Ga0070678_1008430192	3300005456	Miscanthus Rhizosphere	MSMSPEDRLVSLLSHWLARHVGNSELRAEVEAAGRDGLSAEQSEAVDELLAELERAGPNGRGDLEMVVRETLEALALG*
Ga0068867_1010794792	3300005459	Miscanthus Rhizosphere	MSPEDRIVTLLSRWLARHLDNVRLREEIVAAGRDGLSADQEEAVDELLGELERAQPKERGDVEVAVRETLEALALG*
Ga0070741_1000233939	3300005529	Surface Soil	MSTSPEDRIVALLSRWLARHLDNAQLRDEVQAAGRGGLSAAQTEAVDELLAALSTGPEGRASLEPLVRETLEALALAD*
Ga0070741_1000835514	3300005529	Surface Soil	MSTSPEDRIVGLLSRWLARHLDNAQLRAGVAAAGRHGLSPGQAEAVEELVAELERAGPTERGDVEMVVRETLEALALG*
Ga0070684_1013363422	3300005535	Corn Rhizosphere	MPTSMSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNSRGDLEMVVRETLEALALG*
Ga0070686_1011921381	3300005544	Switchgrass Rhizosphere	EDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG*
Ga0068855_1012522541	3300005563	Corn Rhizosphere	GRSSCTVSARSPWAPTSFSTRTSMSPEDQIVGLLSRWLARHLDNTQLRAGLDVAGCEGLSGEQSDALDELKEELERAGPTGRGDLEMVVRETLEALALG*
Ga0068855_1020987892	3300005563	Corn Rhizosphere	RWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNGRGDLEMVVRETLEALALG*
Ga0068856_1006898402	3300005614	Corn Rhizosphere	MSPEDRLVSLLSHWLARHVGNSELRAEVEAAGRDGLSAEQSEAVDELLAELERAGPNGRGDLEMVVRETLEALALG*
Ga0068856_1008866881	3300005614	Corn Rhizosphere	MSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRE
Ga0066903_1001618534	3300005764	Tropical Forest Soil	MSPEDRLVGLLSRWLARHIGNAELREEIEAAGRDGLSTEQGEALDELVAELERAGPAGRGDVEMVVRETLEALALG*
Ga0066903_1001661813	3300005764	Tropical Forest Soil	MSPEDQIVGLLSRWLARHIDNTELRAGLDSAGRHGLSAEQEEALDELDEELDRTGPIGRGDLEMVVRETLEALALG*
Ga0068858_1007202692	3300005842	Switchgrass Rhizosphere	MSPEDQIVGLLSRWLARHLDNTQLRAGLDVAGREGLSGEQSDALDELKEELERAGPTGRGDLEMVVRETLEALALG*
Ga0075288_10133362	3300005874	Rice Paddy Soil	MSSSMPMSTSPEDRLVGLLSRWLARHVGNDELRAEIDAAGREGLSPQQSEAVDELLAGLERAGPNGRGDLEMVVRETLEALALG*
Ga0075292_10735172	3300005887	Rice Paddy Soil	MSTSPEDQIVALLSRWLARHLGNEQLRRALEATDRSVLPADQAELVDELRAELANAGPNDRGALEPLVRETIEAIALY*
Ga0075290_10188462	3300005889	Rice Paddy Soil	MRFSPPMSTSPEDQIVALLSRWLARHLGNEQLRRALEATDRSVLPADQAELVDELRAELANAGPNDRGALEPLVRETIEAIALY*
Ga0081455_100833253	3300005937	Tabebuia Heterophylla Rhizosphere	MSMGPEDRLIGLLSRWLAGHLDNAQLRAEIAETGRDGLSVDQSAALDDLVEALEQAGPTGRGGLEMVVRETLEALALG*
Ga0081455_108305612	3300005937	Tabebuia Heterophylla Rhizosphere	MSPEDRLVGLLSRWLAGHLDNVQLRAEIAETGRRGLSPDQSAAVDDLVEALEQAGRTGRGGLEMVVRETLEALALG*
Ga0075365_102920913	3300006038	Populus Endosphere	PRTSMSPEDRIVTLLSRWLARHLDNVRLKAEIEAAGREGLSPDQAEALDELLLELGRATPHQRGDVEVAVRETLEALALG*
Ga0075364_102599273	3300006051	Populus Endosphere	TLLSRWLARHLDNVRLKAEIEAAGREGLSPDQAKALDELLLELGRATPHQRGDVEVAVRETLEALALG*
Ga0075367_108572552	3300006178	Populus Endosphere	MSPEDRIVTLLSRWLARHLDNVRLKAEIEAAGREGLSPDQAEALDELLLELGRATPHQRGDVEVAVRETLEALALG*
Ga0097621_1003109233	3300006237	Miscanthus Rhizosphere	MSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRE
Ga0074048_131034592	3300006581	Soil	SAPMSSSMPTSMSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERTGPNGRGDLEMVVRETLEALALG*
Ga0075425_1008627012	3300006854	Populus Rhizosphere	MSFSMPVSMSPEDRLVSLLSHWLARHVGNTELRAGIDAAGREGLSPEQSEAVDELIAELVRAGPNGRGDLEMVVRETLEALALG*
Ga0075425_1021769062	3300006854	Populus Rhizosphere	MSPEDRLVSLLSHWLAGHLDNAALRAGIDDAGRDGLSGEQTEAVDELVAAIDRNPTGRGDLERLARETLEALALG*
Ga0075425_1027068602	3300006854	Populus Rhizosphere	MSPEDRLVGLLSRWLARHIGNAELRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0075434_1004925711	3300006871	Populus Rhizosphere	MFSSMTMSMSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0068865_1013970732	3300006881	Miscanthus Rhizosphere	SMSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0075424_1005157263	3300006904	Populus Rhizosphere	PTYCSMRMSMSPEDRLVSLLSRWLAGHLDNAELRVGIDDAGRDGLSAEQSEAVDELVAAIDRNPTGRGDLERLARETLEALALG*
Ga0066710_1002431153	3300009012	Grasslands Soil	MSTSPEDRIVTVLSRWLARHLDNVELRQEIEAAGRDALSPEQAEVVDELLQELARAGPNDRGALEPLVRETLEALALG
Ga0111539_115958702	3300009094	Populus Rhizosphere	MSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0105245_109558171	3300009098	Miscanthus Rhizosphere	PEDRIVTLLSRWLARHLDNVRLREEIVAAGRDGLSADQEEAVDELLGELERAQPKERGDVEVAVRETLEALALG*
Ga0066709_1005666802	3300009137	Grasslands Soil	MSTSPEDRIVTVLSRWLARHLDNVELRQEIEAAGRDALSPEQAEVVDELLQELARAGPNDRGALEPLVRETLEALALG*
Ga0075423_102954593	3300009162	Populus Rhizosphere	MSPEDRLVSLLSRWLAGHLDNAELRVGIGDAGRDGLSAEQAEAVDELVAAIDRNPTGRGDLERLARETLEALALG*
Ga0105241_107698482	3300009174	Corn Rhizosphere	MSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALAIDARPS
Ga0105249_128441341	3300009553	Switchgrass Rhizosphere	SRSVPMSCSMPTSMSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNGRGDLEMVVRETLEALALG*
Ga0126380_116607021	3300010043	Tropical Forest Soil	MSPEDQIVGLLSRWLARHIDNTELHAGLDSAGRHGLSAEQEEALDELDEELDRTGPIGRGDLEM
Ga0126370_104135151	3300010358	Tropical Forest Soil	MSPEDQIVGLLSRWLARHIDNTELRAGLDSAGRHGLSAEQEEALDELDEELDRTGPTGRGDLEMVVRETLEALALG*
Ga0126376_124331032	3300010359	Tropical Forest Soil	MSPEDRLVGLLSRWLARHIDNAELRTEVEAVGREGLSPEQEEAVDELVAELARAGPSERGDVEMVVRETLEALALG*
Ga0126377_100107598	3300010362	Tropical Forest Soil	MSPEDRLVGLLSRWLARHIGNAQLRAGIEAAGREGLSPEQEEAVDELVAELARAGPSERGDVEMVVRETLEALALG*
Ga0126377_119590062	3300010362	Tropical Forest Soil	MSPEDRLVGLLSRWLARHIGNAQLRAEIEAAGRDGLTTDQDEALDELVAELERAGPTERGDVEMVVRETLEALALG*
Ga0105239_112813871	3300010375	Corn Rhizosphere	LARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERASPNGRGDLEMVVRETLEALALG*
Ga0134127_103156444	3300010399	Terrestrial Soil	SHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG*
Ga0137374_102705193	3300012204	Vadose Zone Soil	MSPEDRIVSLLSRWLARHLDNEQLRAQLEAAGREGLSVEQAEAVDELLVELAGSSRAGRGALEPLVRETMEALALG*
Ga0157374_111337112	3300013296	Miscanthus Rhizosphere	MSPEDRLVGLLSRWPARHIGTAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0163162_102408442	3300013306	Switchgrass Rhizosphere	MSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNGRGDLEMVVREALEALALG*
Ga0163162_106319792	3300013306	Switchgrass Rhizosphere	MSPEDRLVGRLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0157375_125259172	3300013308	Miscanthus Rhizosphere	GLLSRWLARHIGNAELRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG*
Ga0075323_10744583	3300014301	Natural And Restored Wetlands	MSTSPEDRIVTLCSRWLARHLDNAELHEAVAAAGTHGLSAGQAEAVGELLAELAHAAPQERGDVEMTVRETLEALALG*
Ga0075316_11929082	3300014314	Natural And Restored Wetlands	MSTSPEDRIVGLLSRWLARHLDNAELLAAIRAAGREGLTPDQAQALDELLVELEGAARTERGGVEVAVRETLEALALG*
Ga0132258_112190023	3300015371	Arabidopsis Rhizosphere	MSPEDQIVSLLSHWLARHIGDAELAAGLESAGREGLSTDQVEALDELEAELASVDSTSRGELEKVARETLEALALG*
Ga0132255_1052048282	3300015374	Arabidopsis Rhizosphere	MSMSPEDQIVSLLSHWLARHIGDAELAAGLESAGREGLSTDQVEALDELEAELASVDSTSRGELEKVARETLEALALG*
Ga0187786_102407331	3300017944	Tropical Peatland	ACGSSRSATTSSSTPTSMSPEDRIVELLSRWLARHVGNGELRDGVLAAGRDGLSPVQLEAVDELLAELERAAPGMRGELEMTVRETLEALALG
Ga0187786_102970262	3300017944	Tropical Peatland	MSPEDLLVGLLSRWLAGHLDNAQLRAGIEDAGRQGLSDDQTEALDDLVAALDRAGPTGRGDLEMVVRETLEALVLG
Ga0187776_111352672	3300017966	Tropical Peatland	MSPEDRIVELLSRWLARHIGNAELRDGVLAAGRDGLSPVQLEAVDELPPGGRAAVNELCTQLAAAVPGERGQLEVLVRETVETLVYGD
Ga0187777_112921342	3300017974	Tropical Peatland	MSPEDRIVDLLSRWLARHLDNARLREGIVAAGTEGLSATQVEAVDELLAELDRAAPGERGELEMTVRETLEALALG
Ga0184623_101932322	3300018056	Groundwater Sediment	MSPEDRIVSLLSRWLARHLDNEQLKAEVEAAGREGLSVEQAEAVDELLVELAGSSRAGRGALEPLVRETMEALALG
Ga0187765_100145354	3300018060	Tropical Peatland	MSPEDLLVGLLSRWLAGHLDNAQLQAGIGDAGRQGLSADQAEALDDLLADLDRAGPNRSGELERTVRETLEALALG
Ga0184635_102033201	3300018072	Groundwater Sediment	MSPEDRLVGLLSRWLARHIGNAELHSEIETAGREGLSPEQAEALDELLAELERTGPNGRGDLEMVVRETLEALALG
Ga0247664_10058452	3300024232	Soil	MSPEDQIVGLLSRWLARHLDNTQLRAGLDVAGCEGLSGEQSDALDELKEELERAGPTGRGDLEMVVRETLEALALG
Ga0207688_106613822	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSPEDRLVSLLSHWLARHVGNGELRDEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG
Ga0207659_107873302	3300025926	Miscanthus Rhizosphere	MSPEDRIVTLLSRWLARHLDNVRLREEIVAAGRDGLSADQEEAVDELLGELERAQPKERGDVEVAVRETLEALALG
Ga0207687_109242432	3300025927	Miscanthus Rhizosphere	MSPEDRLVGLLSRWLARHIGNAELHAEIEAAGRDGLSPEQAEALDELLAELERAGPNGRGDLEMVVRETLEALALG
Ga0207687_113289842	3300025927	Miscanthus Rhizosphere	MFSSMPMSMSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG
Ga0207644_116182962	3300025931	Switchgrass Rhizosphere	MSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEA
Ga0207704_107217281	3300025938	Miscanthus Rhizosphere	VPSSSTISAPSPSVPMSSSMPTSMSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG
Ga0210067_10190362	3300025947	Natural And Restored Wetlands	MSSSTPMSMSPEDQLVGLLSRWLAGHLDNTELREGIAGASRVGLSADQSAALDELAAELERAGPTGRGDLEMVARETLEALVLG
Ga0207667_109566212	3300025949	Corn Rhizosphere	SFSTRTSMSPEDQIVGLLSRWLARHLDNTQLRAGLDVAGCEGLSGEQSDALDELKEELERAGPTGRGDLEMVVRETLEALALG
Ga0208415_10285282	3300025993	Rice Paddy Soil	RPSVPMSSSMPMSTSPEDRLVGLLSRWLARHVGNDELRAEIDAAGREGLSPQQSEAVDELLAGLERAGPNGRGDLEMVVRETLEALALG
Ga0207703_110227512	3300026035	Switchgrass Rhizosphere	MSPEDQIVGLLSRWLARHLDNTQLRAGLDVAGREGLSGEQSDALDELKEELERAGPTGRGDLEMVVRETLEALALG
Ga0207708_109553841	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSPEDRLVSLLSHWLARHVGNSELRAEVEAAGRDGLSAEQSEAVDELLAELERAGPNGRGDLEMVVRETLEALA
Ga0207702_100203707	3300026078	Corn Rhizosphere	MSPEDRLVSLLSHWLARHVGNSELRAEVEAAGRDGLSAEQSEAVDELLAELERAGPNGRGDLEMVVRETLEALALG
Ga0207702_123139211	3300026078	Corn Rhizosphere	MSPEDRLVGLLSRWLARHIGNAGLRAGIDAAGRAGLSPEQEEAVDELVAELERAGPAERGDVEMVVRETLEALALG
Ga0207674_119887412	3300026116	Corn Rhizosphere	MARTRGRTAWYRPLEPMSSSMPTSMSPEDRLVSLLSHWLARHVGNGELRAEIEAAGRDGLSREQSEAVDELVAELERAGPNGRGDLEMVVRETLEALALG
Ga0265318_100885242	3300028577	Rhizosphere	MSPEDRIVTLLSRWLARHIDNVRLREEVVAAGREGLSEDQAAAVDELLVELAAATPEARGGIEVAVRETLEALALG
Ga0307307_102771591	3300028718	Soil	SSMPTSMSPEDRLVSLLSHWLARHVGNVELRAEIEAAGRGGLSPEQSEAVDELLAELERAGSNGRGDLEMVVRETLEALALG
Ga0247826_100537371	3300030336	Soil	MSMSPEDLLVGLLSRWLAGHLDNIELRAGIEETGRQGLSADQEDALDDLVASLDRAGPTGRGDLEMVVRETLEALALG
Ga0247826_101527093	3300030336	Soil	MSPEDRIVTLLSRWLARHLDNVRLKAEIEAAGREGLSPDQAEALDELLLELGRATPHQRGDVEVAVRETLEALALG
Ga0335082_111277191	3300032782	Soil	MSPEDQIVELLSRWLARHLDNARLREGILAAGSQGLSARQMEAVDELLAELERASPGRRGELEMTVRETLEALALG
Ga0335084_112645041	3300033004	Soil	MSPEDLLVGLLSRWLAGHLSNVQLRAGIEDAGRQGLSDEQTEALDDLVAALDRAGPAGRGDLEMVARETLEALVLG
Ga0335084_115482192	3300033004	Soil	MSPEDLLVGLLSRWLAGHLDNAQLRTGIDDTGREGLSADQAEALDDLVAALDRAGPTGRGDLERTVRETLEALALG
Ga0247830_107783121	3300033551	Soil	VISRPRRSASTSSSLRMSMSPEDLLVGLLSRWLAGHLDNIELRAGIEETGRQGLSADQEDALDDLVASLDRAGPTGRGDLEMVVRETLEALALG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.86
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.86
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097674

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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