Metagenome / Metatranscriptome Family F097635

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097635
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	47 residues
Representative Sequence	MSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLAHYRPYPK
Number of Associated Samples	92
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	43.27 %
% of genes near scaffold ends (potentially truncated)	99.04 %
% of genes from short scaffolds (< 2000 bps)	93.27 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.846 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.154 % of family members)
Environment Ontology (ENVO)	Unclassified (35.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.44% β-sheet: 0.00% Coil/Unstructured: 60.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF03401	TctC	4.81
PF04392	ABC_sub_bind	3.85
PF00589	Phage_integrase	1.92
PF00072	Response_reg	0.96
PF00239	Resolvase	0.96
PF13546	DDE_5	0.96
PF13557	Phenol_MetA_deg	0.96
PF13489	Methyltransf_23	0.96
PF13185	GAF_2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.81
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.85
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.96
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.85 %
Unclassified	root	N/A	46.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.85 %
Unclassified	root	N/A	46.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.85 %
Unclassified	root	N/A	46.15 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.92 %
Unclassified	root	N/A	46.15 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.15 %
Unclassified	root	N/A	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	33.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	30.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	30.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	30.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.96 %
Bradyrhizobium nanningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	0.96 %
Methylorubrum populi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum populi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	30.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Bradyrhizobium sp. 35	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 35	0.96 %
Bradyrhizobium nanningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	0.96 %
Methylorubrum populi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum populi	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111022\|2221188366	Not Available	518	Open in IMG/M
3300001431\|F14TB_100471769	Not Available	505	Open in IMG/M
3300001976\|JGI24752J21851_1031867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	697	Open in IMG/M
3300002075\|JGI24738J21930_10107884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	598	Open in IMG/M
3300002077\|JGI24744J21845_10036246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	931	Open in IMG/M
3300002244\|JGI24742J22300_10003697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2484	Open in IMG/M
3300005158\|Ga0066816_1023219	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300005168\|Ga0066809_10225834	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300005332\|Ga0066388_101782772	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300005332\|Ga0066388_104222942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	732	Open in IMG/M
3300005332\|Ga0066388_105871477	Not Available	620	Open in IMG/M
3300005363\|Ga0008090_10210274	Not Available	633	Open in IMG/M
3300005440\|Ga0070705_100325750	Not Available	1111	Open in IMG/M
3300005447\|Ga0066689_10802918	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300005615\|Ga0070702_100384760	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300005713\|Ga0066905_102315359	Not Available	502	Open in IMG/M
3300005718\|Ga0068866_10025358	All Organisms → cellular organisms → Bacteria → Proteobacteria	2786	Open in IMG/M
3300005764\|Ga0066903_102716861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	960	Open in IMG/M
3300005840\|Ga0068870_10691477	All Organisms → cellular organisms → Bacteria → Proteobacteria	703	Open in IMG/M
3300006050\|Ga0075028_100063301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	1810	Open in IMG/M
3300006051\|Ga0075364_10554577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	785	Open in IMG/M
3300006196\|Ga0075422_10185722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	848	Open in IMG/M
3300006844\|Ga0075428_101820124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	634	Open in IMG/M
3300006904\|Ga0075424_101515428	Not Available	711	Open in IMG/M
3300009011\|Ga0105251_10356676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	668	Open in IMG/M
3300009100\|Ga0075418_10563256	Not Available	1225	Open in IMG/M
3300010043\|Ga0126380_11347030	Not Available	624	Open in IMG/M
3300010046\|Ga0126384_11095797	Not Available	730	Open in IMG/M
3300010046\|Ga0126384_12418740	Not Available	509	Open in IMG/M
3300010047\|Ga0126382_10342325	Not Available	1142	Open in IMG/M
3300010359\|Ga0126376_13184981	Not Available	508	Open in IMG/M
3300010361\|Ga0126378_10536189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1285	Open in IMG/M
3300010362\|Ga0126377_12898929	Not Available	553	Open in IMG/M
3300010376\|Ga0126381_101673808	Not Available	919	Open in IMG/M
3300010398\|Ga0126383_10721060	Not Available	1076	Open in IMG/M
3300010398\|Ga0126383_11161489	Not Available	862	Open in IMG/M
3300011119\|Ga0105246_12269219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	530	Open in IMG/M
3300012207\|Ga0137381_11549176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	554	Open in IMG/M
3300012897\|Ga0157285_10344408	Not Available	521	Open in IMG/M
3300012903\|Ga0157289_10285566	Not Available	577	Open in IMG/M
3300012911\|Ga0157301_10245860	Not Available	627	Open in IMG/M
3300012986\|Ga0164304_11503153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	557	Open in IMG/M
3300012989\|Ga0164305_11363544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300013306\|Ga0163162_10808307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1055	Open in IMG/M
3300015372\|Ga0132256_102908618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	576	Open in IMG/M
3300015372\|Ga0132256_103009583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	567	Open in IMG/M
3300016341\|Ga0182035_11483309	Not Available	610	Open in IMG/M
3300016371\|Ga0182034_10167631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1668	Open in IMG/M
3300016371\|Ga0182034_11201999	Not Available	659	Open in IMG/M
3300016387\|Ga0182040_11223483	Not Available	632	Open in IMG/M
3300016404\|Ga0182037_11242006	Not Available	655	Open in IMG/M
3300016422\|Ga0182039_10604270	Not Available	959	Open in IMG/M
3300016445\|Ga0182038_10988560	Not Available	745	Open in IMG/M
3300017792\|Ga0163161_10730710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	827	Open in IMG/M
3300018073\|Ga0184624_10150285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1023	Open in IMG/M
3300018468\|Ga0066662_10220668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1520	Open in IMG/M
3300019361\|Ga0173482_10536109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	575	Open in IMG/M
3300021560\|Ga0126371_13185196	Not Available	555	Open in IMG/M
3300025898\|Ga0207692_11091878	Not Available	528	Open in IMG/M
3300025923\|Ga0207681_11512650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	563	Open in IMG/M
3300025926\|Ga0207659_11104425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	682	Open in IMG/M
3300025936\|Ga0207670_10101194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2059	Open in IMG/M
3300025949\|Ga0207667_11512674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	642	Open in IMG/M
3300025981\|Ga0207640_10532308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	984	Open in IMG/M
3300025981\|Ga0207640_10986345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	740	Open in IMG/M
3300026023\|Ga0207677_10417303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1142	Open in IMG/M
3300026088\|Ga0207641_11653279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	642	Open in IMG/M
3300026116\|Ga0207674_10940923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	832	Open in IMG/M
3300026538\|Ga0209056_10460108	Not Available	708	Open in IMG/M
3300027866\|Ga0209813_10190149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	755	Open in IMG/M
3300027874\|Ga0209465_10553142	Not Available	572	Open in IMG/M
3300028793\|Ga0307299_10093391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1123	Open in IMG/M
3300028819\|Ga0307296_10361487	Not Available	793	Open in IMG/M
3300028876\|Ga0307286_10220567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum populi	691	Open in IMG/M
3300031545\|Ga0318541_10187492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300031561\|Ga0318528_10019921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3190	Open in IMG/M
3300031561\|Ga0318528_10692350	Not Available	545	Open in IMG/M
3300031573\|Ga0310915_10416330	Not Available	954	Open in IMG/M
3300031640\|Ga0318555_10080980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1690	Open in IMG/M
3300031681\|Ga0318572_10826594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	550	Open in IMG/M
3300031719\|Ga0306917_10013049	All Organisms → cellular organisms → Bacteria	4861	Open in IMG/M
3300031723\|Ga0318493_10864014	Not Available	511	Open in IMG/M
3300031724\|Ga0318500_10003454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4784	Open in IMG/M
3300031744\|Ga0306918_10128899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1843	Open in IMG/M
3300031763\|Ga0318537_10382242	Not Available	519	Open in IMG/M
3300031778\|Ga0318498_10390241	Not Available	619	Open in IMG/M
3300031793\|Ga0318548_10176336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1046	Open in IMG/M
3300031821\|Ga0318567_10804528	Not Available	532	Open in IMG/M
3300031879\|Ga0306919_10247884	Not Available	1339	Open in IMG/M
3300031879\|Ga0306919_10670064	Not Available	799	Open in IMG/M
3300031879\|Ga0306919_10849530	Not Available	700	Open in IMG/M
3300031890\|Ga0306925_10328432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1643	Open in IMG/M
3300031942\|Ga0310916_11300343	Not Available	598	Open in IMG/M
3300031954\|Ga0306926_10071214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4208	Open in IMG/M
3300031954\|Ga0306926_11163242	Not Available	908	Open in IMG/M
3300031981\|Ga0318531_10332528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	687	Open in IMG/M
3300032041\|Ga0318549_10505886	Not Available	543	Open in IMG/M
3300032044\|Ga0318558_10606720	Not Available	547	Open in IMG/M
3300032059\|Ga0318533_10442839	Not Available	950	Open in IMG/M
3300032065\|Ga0318513_10449570	Not Available	630	Open in IMG/M
3300032067\|Ga0318524_10791656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	501	Open in IMG/M
3300032068\|Ga0318553_10273823	Not Available	882	Open in IMG/M
3300032068\|Ga0318553_10416901	Not Available	703	Open in IMG/M
3300033290\|Ga0318519_10166579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 35	1241	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.00%
Host-Associated	Host-Associated	25.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.08%
Plants	Host-Associated → Plants	25.00%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.62%
Sediment	Environmental → Aquatic → Sediment	1.92%
Roots	Host-Associated → Plants → Roots	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.46%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300005158	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2222001428	2209111022	Grass Soil	MGLAMSLNLDIDSLPPEQVEAAITRLEAMKAQRAAENKLAH
F14TB_1004717691	3300001431	Soil	MSLNIDIDSLPPDKVEAAITRLEAVKAQRVAENKLAHYRPYPKQ
JGI24752J21851_10318673	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYR
JGI24738J21930_101078841	3300002075	Corn Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKISLHTI
JGI24744J21845_100362464	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYRPYPKQVA
JGI24742J22300_100036971	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYRPYPKQVAFHAAGAR
Ga0066816_10232192	3300005158	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLAHYRPYPKQVAFH
Ga0066809_102258342	3300005168	Soil	MGLAMSLNLDIDSLPPEQVEAAITRLEAMKAQRATENKLAHYRPYPKQVAFHAAGVRC
Ga0066388_1017827721	3300005332	Tropical Forest Soil	MSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLAHYRPYPK
Ga0066388_1042229423	3300005332	Tropical Forest Soil	MGLAMSLSLDIDSLPPEKVEAAITRLEAVKAQRAAENKLSHYRPYPK
Ga0066388_1058714771	3300005332	Tropical Forest Soil	MSLALDIDSLPLEQAEAAVARLEALKAQRAAENKLAHYCPYPKQAAF
Ga0008090_102102741	3300005363	Tropical Rainforest Soil	MNLNLDIDSLPPEQAEAALIRLEAIKAQRAVENALAHYVPY
Ga0070705_1003257504	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNLNLDIDSLPPEQVEAALTRLEAIKAQRAVENALAHYVP
Ga0066689_108029182	3300005447	Soil	MSLNIDIDSLPPDKVEAAITRLEAVKAQRAAENKLTHYRPYPKQAAFHEA
Ga0070702_1003847601	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYRPYPKQVAFHAAG
Ga0066905_1023153592	3300005713	Tropical Forest Soil	MSLSELDIDSLPPEQAETALTRLEAIRAQRAVENALAHYVPYPRQM
Ga0068866_100253587	3300005718	Miscanthus Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYRPYPKQVAFHAAGARCRE
Ga0066903_1027168611	3300005764	Tropical Forest Soil	LDIDSLPPEKVEAAITRLEAVKAQRAAENKLSHYRPYPKQQLPCC*
Ga0068870_106914772	3300005840	Miscanthus Rhizosphere	MSLSLDIDSLPPDKVEAAISRLETMKAQRAAENKLAHYRPYPKQVAFHAAGARCRE
Ga0075028_1000633013	3300006050	Watersheds	MGLPMSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLAYYR
Ga0075364_105545773	3300006051	Populus Endosphere	MGLAMSLNLDIDGLPAEKVEAAITRLEAMKAQRAAENKLAHYRPYPKQ
Ga0075422_101857221	3300006196	Populus Rhizosphere	MSLNLDIDSLPPEKVEAAISRLETMKAQRAAENKLAHYRPYPKQ
Ga0075428_1018201243	3300006844	Populus Rhizosphere	MGLAMSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLAHYRPYPKQAAFHEAGA
Ga0075424_1015154283	3300006904	Populus Rhizosphere	MSLNIDIDSLPPDKVEAAITRLEAVKAQRVAENKLAHYRPYPKQA
Ga0105251_103566761	3300009011	Switchgrass Rhizosphere	MSLNLDIDSLPPDKVEAAITRLEAMKAQRAAENKLAHYRPYPKQVA
Ga0075418_105632561	3300009100	Populus Rhizosphere	MTLNLDIDSLPPEQAEVALTRLEAIRAQRAVENALAHYLPYPRQKQFHNAGATHR
Ga0126380_113470302	3300010043	Tropical Forest Soil	MTLIDIENLPPEQAEAALARLAEIKAQRAVENALAHYVP
Ga0126384_110957973	3300010046	Tropical Forest Soil	MSLNLDIDSLPPEQAEAALTRLEAIKAQRTVENALAHYEPYPRQLQFHDAGATHTSAHC
Ga0126384_124187402	3300010046	Tropical Forest Soil	MSLNLDIDIDSLPPEQAETALTRLEAIKAQRAVENALAHYVPYPRQEQ
Ga0126382_103423254	3300010047	Tropical Forest Soil	MTLNLDIDSLPPEQAEAALTRLEAIKAQRAVENALAHYVPYPRQMQFHNAGA
Ga0126376_131849812	3300010359	Tropical Forest Soil	MNLNLDIDSLPPEQAEAVLTRLEAIKAQRAVENVLAHYVPYPRQEQFHNAGATHR
Ga0126378_105361891	3300010361	Tropical Forest Soil	MSLNLDIDSLPPEQVEAAITRLEAVKAQRAAENKLSHYRPYPKQVAFH
Ga0126377_128989292	3300010362	Tropical Forest Soil	LSLDIDSLPPEKVKAAIARLEAEKTRRIVENKLAH
Ga0126381_1016738082	3300010376	Tropical Forest Soil	MTLIDIESLPPEQVEAALTRLEAIKAQRAAENALAHYVPYPR
Ga0126383_107210603	3300010398	Tropical Forest Soil	MNLNLDIDSLPPEQVEAALTRLEAIKVQRAVENALAHYVPYPRQEQFHNAGATHRE
Ga0126383_111614891	3300010398	Tropical Forest Soil	LSLDVDSLPPDKVAAAIERLEAEKHRRVVENALAHYAPYAKQAAFHEAG
Ga0105246_122692192	3300011119	Miscanthus Rhizosphere	MSLNLDIDTLPPEKVEAAISRLEAMKAQCAAENKLAH
Ga0137381_115491761	3300012207	Vadose Zone Soil	MSLNLDIDSLPLEQAEAAVARLEALKAQRAAENKLA
Ga0157285_103444081	3300012897	Soil	MSLNLDIDSLPPEKVEALVTRLETMKAQRAAENKLAHYRPYPKQAAF
Ga0157289_102855662	3300012903	Soil	MSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLAHYRPYPKQIAFHAAGVRC
Ga0157301_102458602	3300012911	Soil	MSLNLDIDSLPPEQVEAAITRLEAMKAQRATENKLAHYRPYPK
Ga0164304_115031531	3300012986	Soil	MGLPMSLNLDIDSLPPEKVEAAISRLEAMKAQRAAENKFAHYRPYPKQVAFHAAGARCRE
Ga0164305_113635442	3300012989	Soil	MSLNLDIDSLPPEKVEAAITRLEMMKAQRAAENKLAH*
Ga0163162_108083073	3300013306	Switchgrass Rhizosphere	MGLPMSLNLDIDSLPPEKVEAAISRLEAVKAQRAAENKLA
Ga0132256_1029086182	3300015372	Arabidopsis Rhizosphere	MSLNLDIDSLPPEKVEAAITRLEAIKAQRAVENALAHYVPYPRQKQFHNAGATHRERLL
Ga0132256_1030095832	3300015372	Arabidopsis Rhizosphere	MSLNLDIDSLPPEKVEAAISRLEAMKAQRAAENKLAHYYPYPKQIAFHATGVRCRERLLI
Ga0182035_114833093	3300016341	Soil	MSLNLDIDSLPPEQAEAALTRLEAIKARRAVENALAHYVPYPRQEQFHNAGATHRERL
Ga0182034_101676313	3300016371	Soil	MGLAMSVNLDIDSLPPDKVEAAITRLEAVKAQRAAENKLAHYRPYPK
Ga0182034_112019991	3300016371	Soil	MKPNLDIDSLPPEQAEVALTRLEAIKAQRAVENALAHY
Ga0182040_112234833	3300016387	Soil	MNLDIDSLPPEQAEVALTRLEAIKAKRAVENALAHYVPYPRQ
Ga0182037_112420062	3300016404	Soil	MNLNLDIDSLPPEQAEAALTRLEAIKARRAVENALAHYVPY
Ga0182039_106042703	3300016422	Soil	MNLNLDIDSLPPEQVEAALTRLEAIKVQRAVENALAHYVPYPRQEQFHNA
Ga0182038_109885602	3300016445	Soil	MSLNLDIDSLPPEKVEAAITRLEAVKAQRAAENKLSH
Ga0163161_107307102	3300017792	Switchgrass Rhizosphere	MLMGLAMSLNLDIDSLPPEKVEAAISRLEAMKAQRAAENRLAYYRP
Ga0184624_101502851	3300018073	Groundwater Sediment	MLMGLAMSLNLDIDSLPPEQVEAAITRLEAMKAQRAAENKLAHFTPFPRQLEFFAAGAKYRERPISNVRFDGG
Ga0066662_102206681	3300018468	Grasslands Soil	MSLALDIDSLPLERAEAAITRLEALKAQRAAENRL
Ga0173482_105361093	3300019361	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAMKAQRAA
Ga0126371_131851962	3300021560	Tropical Forest Soil	MNLNLDIDSLPPEQAETALTRLEAIKAQRAVENAL
Ga0207692_110918781	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEAMKAQRAAENKLAHYRPYPKQAAFHE
Ga0207681_115126501	3300025923	Switchgrass Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLA
Ga0207659_111044252	3300025926	Miscanthus Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAK
Ga0207670_101011941	3300025936	Switchgrass Rhizosphere	MGLAMSLNLDIDSLPPEKVEAAITRLEVMKAQRAAENKLAHYRPYPKQVAFHAAGARCRE
Ga0207667_115126742	3300025949	Corn Rhizosphere	MSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLTHYRPY
Ga0207640_105323081	3300025981	Corn Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEAMKAQRAAEN
Ga0207640_109863451	3300025981	Corn Rhizosphere	MSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYRPYPKQVAFHAA
Ga0207677_104173034	3300026023	Miscanthus Rhizosphere	MSLNLDIDSLPPEKVEAAISRLEAMKAQRAAENKFAHYRPY
Ga0207641_116532791	3300026088	Switchgrass Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYRPYPK
Ga0207674_109409233	3300026116	Corn Rhizosphere	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAKNKLAHYRPY
Ga0209056_104601083	3300026538	Soil	MGLAMSLNLDIDSLPPDKVEAAITRLEAVKAQRAAENKLAHYRPYPKQAAFHEAGAKH
Ga0209813_101901492	3300027866	Populus Endosphere	MLMGLAMSLNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLTHYRPYP
Ga0209465_105531421	3300027874	Tropical Forest Soil	MTLNLDIDSLPPEQAEVALTRLEAIRAQRAVENALAHYVPYPRQKPFHNAGATHRERLLI
Ga0307299_100933911	3300028793	Soil	MNLDIDSLPPEKVEAAITRLEAMKAQRAAENKLAHYRPYPKQ
Ga0307296_103614871	3300028819	Soil	MSLNLDIESLPPEKVEAAITRLEAMKAQRAAENKLAYYRPYPKQVAFHAAGV
Ga0307286_102205671	3300028876	Soil	MGLAMSLNLDIDSLPPEQVEAAITRLEMMKAQRAAENKLAHYRPYPKQVAFHAAGARCRE
Ga0318541_101874923	3300031545	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAVKTQRAAENKLAHYRPYPKQAAFHEA
Ga0318528_100199216	3300031561	Soil	MSLNLDIDSLPPEQVEAAITRLEAVKAQRAAENKLSHYRPYPKQAAFHEAG
Ga0318528_106923501	3300031561	Soil	MNLNLDIDSLPPEQAEVALTRLEAIKAQRAVENALAHYV
Ga0310915_104163302	3300031573	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAVKAQRAAENKLSHYRPYPKQVAFHDAGAK
Ga0318555_100809801	3300031640	Soil	MSLNLDIDSLPPEQVEAAITRLEAVKAQRAAENKL
Ga0318572_108265941	3300031681	Soil	MGLAMSLNLDIDSLPPEQVEAAITRLEAVKAQRAAENKLAHYRPYPKQAAFHEAGAKHR
Ga0306917_100130491	3300031719	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAVKAQRAAENKLSHY
Ga0318493_108640142	3300031723	Soil	MNLNLDIDSLPPEQVEAALTRLEAIKVQRAVENALAHYV
Ga0318500_100034541	3300031724	Soil	MGLVMSLNLDIDSLPPEKVEAAITRLEAVKAQRAAENKL
Ga0306918_101288991	3300031744	Soil	MNLNLDIDSLPPEQVEAALTRLEAIKVQRAVENALAHYVPYPRQEQFHNAGATHRERLL
Ga0318537_103822422	3300031763	Soil	MNLDIDSLPPEQAEVALTRLEAIKAKRAVENALAHYVPYPRQEQFHNAGATHRE
Ga0318498_103902411	3300031778	Soil	MNLNLDIDSLPPEQVEAALTRLEAIKVQRAVENALAHYVPYPRQEQFH
Ga0318548_101763363	3300031793	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAVKTQRAAENK
Ga0318567_108045282	3300031821	Soil	MNLNLDIDSLPPEQAEAALTRLEAIKAQRAVENALAHYVPYPRQE
Ga0306919_102478841	3300031879	Soil	MTLNLDIDSLPPEQAEAALARLEAIKTQRAVENALAHYVPYPRQEQ
Ga0306919_106700641	3300031879	Soil	MNLNPNLKIDSLPPEQAEAALTRLEAIKAQRAVENALANYAPYPRQEQFHN
Ga0306919_108495301	3300031879	Soil	MNLDIDSLPPEQAEVALTRLEAIKAKRAVENALAHYVPYPRQQQFHNAGATHRERLL
Ga0306925_103284321	3300031890	Soil	MSLNLDIDSLPPEQVEAAITRLEAVKAQRAAENKLAHYRPYPKQAAFHEAG
Ga0310916_113003431	3300031942	Soil	MNLNPNLKIDSLPPEQAEAALTRLEEIKAQRAVENALAHYVPYPRQEQFHNAGA
Ga0306926_100712145	3300031954	Soil	MGLVMSLNLDIDSLPPEQVEAAITRLEAVKAQRAAENK
Ga0306926_111632421	3300031954	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAVKAQRAAENKLSHYR
Ga0318531_103325281	3300031981	Soil	MGLVMSLNLDIDSLPPEKVEAAITRLEAVKAQRAAENKLAHYRPYPKQAAFHEAG
Ga0318549_105058861	3300032041	Soil	MNLNLDIDSLPPEQAEAALTRLEAIKAQRAVENALAHYVPYPRQEQFH
Ga0318558_106067201	3300032044	Soil	MNLNLNIDSLPPEQAEVALTRLEAIKAQRAVENALAHYVPYPRQQQF
Ga0318533_104428392	3300032059	Soil	MGLAMSLNLDIDSLPPEKVEAAITRLEAVKAQRAAENKLSHYRPYPKQ
Ga0318513_104495701	3300032065	Soil	MNLNLDIDSLPPEQAEAALTRLEAIKAQRAVENKLVHYR
Ga0318524_107916561	3300032067	Soil	MGLVMSLNLDIDSLPPEQVEAAITRLEAVKAQRAAENKLAHYRPY
Ga0318553_102738231	3300032068	Soil	MNLNLDIDSLPPEQAEAALTRLEAIKAQRAVENKLV
Ga0318553_104169011	3300032068	Soil	MNLDIDSLPPEQAEVALTRLEAIKAKRAVENALAHYVPYPRQEQFHNAGAT
Ga0318519_101665793	3300033290	Soil	MGLAMSLNLDIESLPPEQVEAAITRLEAVKAQRAAENKLAHYRPYPKQAAFHEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097635

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences