Metagenome / Metatranscriptome Family F097632

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097632
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	56 residues
Representative Sequence	WRFFQGHDTWRVDAHTRKPAQAEAWYAEPREYDSHVLYSEPFVTRDEAEAWAEAQEKP
Number of Associated Samples	73
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	99.04 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.423 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.154 % of family members)
Environment Ontology (ENVO)	Unclassified (29.808 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.44% β-sheet: 13.95% Coil/Unstructured: 68.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.348.1.1: YegP-like	d3bida1	3bid	0.58716
c.119.1.0: automated matches	d2dt8a_	2dt8	0.58295
d.348.1.0: automated matches	d6q2za_	6q2z	0.56274
c.47.1.19: Atu2684-like	d2axoa1	2axo	0.55997
c.119.1.0: automated matches	d6alwa_	6alw	0.55381

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01741	MscL	5.83
PF13610	DDE_Tnp_IS240	3.88
PF13653	GDPD_2	3.88
PF03631	Virul_fac_BrkB	3.88
PF01219	DAGK_prokar	2.91
PF01541	GIY-YIG	1.94
PF13378	MR_MLE_C	1.94
PF01266	DAO	0.97
PF03972	MmgE_PrpD	0.97
PF00701	DHDPS	0.97
PF09650	PHA_gran_rgn	0.97
PF13384	HTH_23	0.97
PF13546	DDE_5	0.97
PF01695	IstB_IS21	0.97
PF00580	UvrD-helicase	0.97
PF02371	Transposase_20	0.97
PF00665	rve	0.97
PF11381	DUF3185	0.97
PF03976	PPK2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	5.83
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	3.88
COG0818	Diacylglycerol kinase	Lipid transport and metabolism [I]	2.91
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.94
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.97
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.97
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.97
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.97
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.97
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.97
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.97
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.97
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
All Organisms	root	All Organisms	35.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
cellular organisms	root	All Organisms → cellular organisms	35.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.50 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.85 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.92 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.88 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.92 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3.85 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	2.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.92 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.92 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.96 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.96 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3.85 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	2.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.96 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.96 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.42 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3.85 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	2.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.92 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.96 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0702840	Not Available	725	Open in IMG/M
3300000559\|F14TC_101117914	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	749	Open in IMG/M
3300000955\|JGI1027J12803_104219812	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	806	Open in IMG/M
3300005174\|Ga0066680_10477145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	785	Open in IMG/M
3300005181\|Ga0066678_11004983	Not Available	541	Open in IMG/M
3300005295\|Ga0065707_10298610	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300005332\|Ga0066388_101821060	Not Available	1083	Open in IMG/M
3300005332\|Ga0066388_102939666	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300005440\|Ga0070705_101536924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	558	Open in IMG/M
3300005441\|Ga0070700_100387150	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300005553\|Ga0066695_10695417	Not Available	597	Open in IMG/M
3300005558\|Ga0066698_10033022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3157	Open in IMG/M
3300005569\|Ga0066705_10504682	Not Available	757	Open in IMG/M
3300005764\|Ga0066903_101763679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300006049\|Ga0075417_10572415	Not Available	573	Open in IMG/M
3300006196\|Ga0075422_10265308	Not Available	726	Open in IMG/M
3300006797\|Ga0066659_10164503	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300006846\|Ga0075430_100579423	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	926	Open in IMG/M
3300006852\|Ga0075433_10427609	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1168	Open in IMG/M
3300006852\|Ga0075433_11177274	Not Available	666	Open in IMG/M
3300006852\|Ga0075433_11591619	Not Available	564	Open in IMG/M
3300006880\|Ga0075429_101423053	Not Available	604	Open in IMG/M
3300006969\|Ga0075419_10248617	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1188	Open in IMG/M
3300009094\|Ga0111539_10728005	Not Available	1155	Open in IMG/M
3300009098\|Ga0105245_12567677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	563	Open in IMG/M
3300009100\|Ga0075418_11003170	Not Available	904	Open in IMG/M
3300009100\|Ga0075418_11220515	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	815	Open in IMG/M
3300009100\|Ga0075418_12785463	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300009137\|Ga0066709_101603326	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	931	Open in IMG/M
3300009147\|Ga0114129_10870429	Not Available	1144	Open in IMG/M
3300009147\|Ga0114129_11327266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	890	Open in IMG/M
3300009162\|Ga0075423_11858898	Not Available	650	Open in IMG/M
3300009678\|Ga0105252_10420412	Not Available	613	Open in IMG/M
3300010043\|Ga0126380_10396468	Not Available	1023	Open in IMG/M
3300010043\|Ga0126380_11426612	Not Available	609	Open in IMG/M
3300010047\|Ga0126382_12210623	Not Available	529	Open in IMG/M
3300010106\|Ga0127472_1091049	Not Available	608	Open in IMG/M
3300010107\|Ga0127494_1030183	Not Available	576	Open in IMG/M
3300010109\|Ga0127497_1085068	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	667	Open in IMG/M
3300010130\|Ga0127493_1006122	Not Available	535	Open in IMG/M
3300010141\|Ga0127499_1097411	Not Available	682	Open in IMG/M
3300010141\|Ga0127499_1098335	Not Available	553	Open in IMG/M
3300010141\|Ga0127499_1210399	Not Available	881	Open in IMG/M
3300010141\|Ga0127499_1251241	Not Available	692	Open in IMG/M
3300010145\|Ga0126321_1074694	Not Available	948	Open in IMG/M
3300010145\|Ga0126321_1243705	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	764	Open in IMG/M
3300010145\|Ga0126321_1323872	Not Available	1021	Open in IMG/M
3300010358\|Ga0126370_12502180	Not Available	514	Open in IMG/M
3300010376\|Ga0126381_103913061	Not Available	581	Open in IMG/M
3300012207\|Ga0137381_10171226	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300012212\|Ga0150985_120271120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	611	Open in IMG/M
3300012357\|Ga0137384_11014625	Not Available	667	Open in IMG/M
3300012372\|Ga0134037_1206385	Not Available	558	Open in IMG/M
3300012390\|Ga0134054_1024165	Not Available	579	Open in IMG/M
3300012406\|Ga0134053_1033600	Not Available	539	Open in IMG/M
3300012469\|Ga0150984_102966550	Not Available	1850	Open in IMG/M
3300013306\|Ga0163162_11103890	Not Available	899	Open in IMG/M
3300014150\|Ga0134081_10270933	Not Available	600	Open in IMG/M
3300014326\|Ga0157380_10455204	Not Available	1230	Open in IMG/M
3300018433\|Ga0066667_11543915	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300018468\|Ga0066662_10299602	Not Available	1350	Open in IMG/M
3300019238\|Ga0180112_1159992	Not Available	503	Open in IMG/M
3300019255\|Ga0184643_1231428	Not Available	525	Open in IMG/M
3300019279\|Ga0184642_1000461	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	760	Open in IMG/M
3300019279\|Ga0184642_1127878	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300019279\|Ga0184642_1651581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300019279\|Ga0184642_1723762	Not Available	521	Open in IMG/M
3300022195\|Ga0222625_1384018	Not Available	540	Open in IMG/M
3300022195\|Ga0222625_1810822	Not Available	601	Open in IMG/M
3300025961\|Ga0207712_11327107	Not Available	643	Open in IMG/M
3300026325\|Ga0209152_10290068	Not Available	611	Open in IMG/M
3300027909\|Ga0209382_11522367	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	665	Open in IMG/M
3300028878\|Ga0307278_10296809	Not Available	715	Open in IMG/M
3300030610\|Ga0247613_10007136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1518	Open in IMG/M
3300030829\|Ga0308203_1047119	Not Available	645	Open in IMG/M
3300030829\|Ga0308203_1095073	Not Available	505	Open in IMG/M
3300030830\|Ga0308205_1008036	Not Available	1022	Open in IMG/M
3300030867\|Ga0102749_1414751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300030903\|Ga0308206_1005134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1707	Open in IMG/M
3300030903\|Ga0308206_1049576	Not Available	829	Open in IMG/M
3300030903\|Ga0308206_1065263	Not Available	754	Open in IMG/M
3300030903\|Ga0308206_1079554	Not Available	704	Open in IMG/M
3300030903\|Ga0308206_1139138	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300030903\|Ga0308206_1144028	Not Available	569	Open in IMG/M
3300030993\|Ga0308190_1052545	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300031058\|Ga0308189_10298047	Not Available	629	Open in IMG/M
3300031058\|Ga0308189_10487351	Not Available	529	Open in IMG/M
3300031058\|Ga0308189_10560333	Not Available	500	Open in IMG/M
3300031091\|Ga0308201_10107795	Not Available	815	Open in IMG/M
3300031092\|Ga0308204_10033821	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300031092\|Ga0308204_10036546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1123	Open in IMG/M
3300031092\|Ga0308204_10037216	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300031092\|Ga0308204_10101308	Not Available	794	Open in IMG/M
3300031092\|Ga0308204_10105697	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300031092\|Ga0308204_10134797	Not Available	718	Open in IMG/M
3300031184\|Ga0307499_10199575	Not Available	615	Open in IMG/M
3300031719\|Ga0306917_11340094	Not Available	553	Open in IMG/M
3300032059\|Ga0318533_11255913	Not Available	542	Open in IMG/M
3300033551\|Ga0247830_11047980	Not Available	651	Open in IMG/M
3300034661\|Ga0314782_210814	Not Available	508	Open in IMG/M
3300034666\|Ga0314788_203120	Not Available	512	Open in IMG/M
3300034666\|Ga0314788_203120	Not Available	512	Open in IMG/M
3300034667\|Ga0314792_025050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1162	Open in IMG/M
3300034667\|Ga0314792_045161	Not Available	952	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.85%
Host-Associated	Host-Associated	21.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.31%
Plants	Host-Associated → Plants	21.15%
Aquatic	Environmental → Aquatic	11.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.23%
Freshwater	Environmental → Aquatic → Freshwater	10.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.69%
Loam	Environmental → Terrestrial → Soil → Loam	5.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.15%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.65%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010107	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010130	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030610	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030867	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07028401	2228664021	Soil	RRWHFFQGRDTYRVDAHTRKPAQAEAWYAEPRAYDSQVLYSEPFVTREEAEAWAQAQGKP
F14TC_1011179142	3300000559	Soil	EAWYAEPREYESPVLYSEPFVTREEAEAWAQAQGKP*
JGI1027J12803_1042198121	3300000955	Soil	RHIPRQELRGGWRFFQGRDTHRVDAHTRKPAQAEAWYTEPREYDSIVLYSEPFVTREEAEAWARAQDKP*
Ga0066680_104771452	3300005174	Soil	WRFYQGRDTQRVDAHTRKPAQAEAWYVEPADYEGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0066678_110049831	3300005181	Soil	RVDAHTRKPAQAEAWYAEPAEYDGIVLYSEPFVTRDEAETWAKTQGKP*
Ga0065707_102986102	3300005295	Switchgrass Rhizosphere	MVGSPTERRQAHQQELARRWHFFQGRDTYRVDAHTRKPAQAEAWYAEPREYESPVLYSEPLVTREEAEAWAQAQGNS*
Ga0066388_1018210601	3300005332	Tropical Forest Soil	DTQRVDAHTRKPAQAEAWYAEPAHYESLVLYSEPFVTREEAEAWTQAHTKQ*
Ga0066388_1029396661	3300005332	Tropical Forest Soil	YWRPTEMRHAHQQELSRRWRFFQGHDTWRVDAHTRKPAQAEAWYVEPREYDSHVLYSEPFVTRDEAEAWAEAQKKP*
Ga0070705_1015369242	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	WHPTATSDVSQQEWRKAWRFFQGHDTQRVDAHTRKPAQAEAWYAEPKNYESIVLYSEPFVTREDAEAWAKAQD*
Ga0070700_1003871501	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	DTQRVDAHTRKPAQAEAWYAEPKNYESIVLYSEPFVTREDAEAWAKAQD*
Ga0066695_106954171	3300005553	Soil	WRFYQGRDTQRVDAHTRKPAQAEAWYVEPADYEGIVLYSEPFVTRDEAETWAQAQGTQ*
Ga0066698_100330221	3300005558	Soil	AQAEAWYVEPADYEGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0066705_105046821	3300005569	Soil	DTQRVDAHTRKPAQAEAWYAEPAEYDGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0066903_1017636791	3300005764	Tropical Forest Soil	LSRRWRFFQGHDTWRVDAHTRKPAQAEAWYVEPREYDSHVLYSEPFVTRDEAEAWAEAQEKS*
Ga0075417_105724151	3300006049	Populus Rhizosphere	TWRVDAHTRKPAQAEAWYAEPCEYDSHVLYSEPFVTRDEAEAWAEAQEKP*
Ga0075422_102653082	3300006196	Populus Rhizosphere	AQAEAWYAEPRAYDNPVLYSEPFVTRDEAEAWAKAQDTP*
Ga0066659_101645034	3300006797	Soil	AQAEAWYVEPAEYDGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0075430_1005794232	3300006846	Populus Rhizosphere	HDTWRVDAHTRKPAQAEAWYAEPRAYDSQVLYSEPFVTRDEAEAWAEAQEKL*
Ga0075433_104276091	3300006852	Populus Rhizosphere	TWRVDAHTRKPAQAEAWYAEPRAYDSQVLYSEPFVTRDEAEAWAEAQEKS*
Ga0075433_111772741	3300006852	Populus Rhizosphere	RHAHQQELSRRWRFFQGHDTWRVDAHTRKPAQAEAWYAEPREYDSHVLYSKPFVTRDEAEAWAEAQEKP*
Ga0075433_115916191	3300006852	Populus Rhizosphere	PARAEAWYAEPREYDSNVLYSEPFVTREEAEAWARDQDKP*
Ga0075429_1014230532	3300006880	Populus Rhizosphere	QQELSRRWRFFQGHDTWRVDAHTRKPAQAEAWYVEPREYESPVLYSEPFVTREEAEAWAQAQGKP*
Ga0075419_102486172	3300006969	Populus Rhizosphere	ELSRRWRFFQGHDTWRVDAHTRKPAQAEAWYAEPRAYDSQVLYSEPFVTRDEAEAWAEAQEKL*
Ga0111539_107280053	3300009094	Populus Rhizosphere	SAHQQALSRRWHFFQGHETSRVDAHTRKPAQAEAWYAEPRAYDNPVLYSEPFVTRDEAEAWAKAQDTP*
Ga0105245_125676772	3300009098	Miscanthus Rhizosphere	DVSQQEWRKAWRFFQGHDTQRVDAHTRKPAQAEAWYAEPKNYESIVLYSEPFVTREDAEAWAKAQD*
Ga0075418_110031701	3300009100	Populus Rhizosphere	RWHFFQGRDTYRVDAHTRKPAQAEAWYAEPRAYDSQVLYSEPFVTRDEAEAWAEAQEKP*
Ga0075418_112205152	3300009100	Populus Rhizosphere	RHAHQQELSRRWRFFQGHDTWRVDAHTRKPAQAEAWYAEPCEYDSHVLYSEPFVTRDEAEAWAEAQEKP*
Ga0075418_127854631	3300009100	Populus Rhizosphere	RKPAQAEAWYAEPRAYDSQVLYSEPFVTRDEAEAWAEAQEKS*
Ga0066709_1016033262	3300009137	Grasslands Soil	RVDAHTRKPAQAEAWYAEPAEYDGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0114129_108704292	3300009147	Populus Rhizosphere	FFQGRDTYSVDAHTRKPAQAEAWYVEPREYESPVLYSEPFVTREEAEAWAQAQGKP*
Ga0114129_113272663	3300009147	Populus Rhizosphere	MRHTHQQELSRRWRFFQGHDTWRVDAHTRKPAQAEAWYAEPREYDSQVLYSEPFVTRNEAEAWAEAQEKP*
Ga0075423_118588981	3300009162	Populus Rhizosphere	WHTKDTSHAPQQELRRAWRFYQGRDTQRVDAHTRKPAQAEAWYAEPCEYDSHVLYSEPFVTRDEAEAWAEAQEKP*
Ga0105252_104204121	3300009678	Soil	HKTWHFFQGHDTQRVDAHTRKPARAEAWYAEPKDYESPVLYSAPFVTRDEAETWAQAQDKP*
Ga0126380_103964682	3300010043	Tropical Forest Soil	AQAEAWYAEPAHYESLVLYSEPFVTREEAEAWTQAHTKQ*
Ga0126380_114266121	3300010043	Tropical Forest Soil	ATRPTPPPALHRAWRFYQGRETSRVDAHTRQPAHAEAWYAEPVGDESLVLYSEPFVTREEAEAWAHAHGKP*
Ga0126382_122106231	3300010047	Tropical Forest Soil	AHTRKPAQAEAWYVEPRGYDSNVLYSEPFVTRDEAEAWAEAQEKP*
Ga0127472_10910492	3300010106	Grasslands Soil	RETPRVDAHTRKPAQAEAWYAEPAEYDGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0127494_10301832	3300010107	Grasslands Soil	RFYQGRETPRVDAHTRKPAQAEAWYVEPADYEGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0127497_10850682	3300010109	Grasslands Soil	PWRFYQGRDTQRVDAHTRKPAQAEAWYVEPAEYDGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0127493_10061221	3300010130	Grasslands Soil	PQHELGRAWRFYQGRDTPRVDAHTRKPAQAEAWYVEPAEYEGMVLYSEPFVTRDEAETWAKAQGKP*
Ga0127499_10974111	3300010141	Grasslands Soil	TDTRHTPQHELRRAWRFYQGRDTPRVDAHTRKPAQAEAWYVEPAEYDGIVLYSEPFVTRDEAEAWAKAQDKP*
Ga0127499_10983351	3300010141	Grasslands Soil	TDTRHTPQHELRRAWRFYQGRDTPRVDAHTRKPAQAEAWYAEPAEYDGIVLYSEPFVTRDEAETWAKTQGKP*
Ga0127499_12103992	3300010141	Grasslands Soil	DAHTRKPAQAQAWYAEPKDYDSNVLYSEPFVTREEAETWAKAQEKQ*
Ga0127499_12512413	3300010141	Grasslands Soil	DAHTRKPARAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAAAQEKP*
Ga0126321_10746942	3300010145	Soil	WYAEPREYDSNVLYSEPFVTREEAEAWARAQDKP*
Ga0126321_12437051	3300010145	Soil	PAETRQLRQQELVRSWRFFQGRDTQRVDAHTRKPAQTEAWYAEPRTYDSNVLYSEPFVTREEAEAWAKAQEKP*
Ga0126321_13238722	3300010145	Soil	AEAWYAEPREYDSNVLYSEPFVTREEAEAWARAQDKP*
Ga0126370_125021801	3300010358	Tropical Forest Soil	MAPGQAPQQEWRKAWRFFQGHDTQRVDAHTRKPAQAQAWYAEPQDYDSHVLYSAAFATRDEAEAWARAKGKP*
Ga0126381_1039130612	3300010376	Tropical Forest Soil	WRFFQGHDTWRVDAHTRKPAQAEAWYAEPREYDSHVLYSEPFVTRDEAEAWAEAQEKP*
Ga0137381_101712263	3300012207	Vadose Zone Soil	DAHTRKPAQAEAWYAEPADYEGIVLYSEPFVTRDEAETWATAQGKP*
Ga0150985_1202711201	3300012212	Avena Fatua Rhizosphere	PRVDAHTRKPAQAEAWYAEPAEYEGMVLYSEPFVTRDEAETWAKAQGKP*
Ga0137384_110146252	3300012357	Vadose Zone Soil	QAEAWYVEPAEYEGIVLYSEPFVTRDEAETWAKAQGKP*
Ga0134037_12063851	3300012372	Grasslands Soil	RAWRFYQGRDTPRVDAHTRKPAQAEAWYVEPADYEGIVLYSEPFVTRDEAETWAKAQGKP
Ga0134054_10241652	3300012390	Grasslands Soil	RGWRFFQGRDTPRVDAHTRKPARAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAAAQEKP
Ga0134053_10336001	3300012406	Grasslands Soil	EWRRAWRLYQGRDTQRVDPHTRKPAQAEAWYVEPAHYESPVLYSEPFVTRDEAEAWAKAQDQP*
Ga0150984_1029665501	3300012469	Avena Fatua Rhizosphere	LSQGWRFFQGHDTQRVDAHTRKPAQAEAWYAEPREYDSHVLYSEPFVTRDEAEAWVKAQEKP*
Ga0163162_111038902	3300013306	Switchgrass Rhizosphere	HTRKPAQAEAWYAEPREYESPVLYSAPFVTRDEAEAWAQAQGQP*
Ga0134081_102709331	3300014150	Grasslands Soil	WAQAQDTQSRPWRFYQGRDTQRVDAHTRKPAQAEAWYVEPADYEGIVLYSEPFVTRDEAETWAQAQDTQ*
Ga0157380_104552043	3300014326	Switchgrass Rhizosphere	WRFFQGHDTQRVDAHTRKPAQAEAWYAEPKNYESIVLYSEPFVTREDAEAWAKAQD*
Ga0066667_115439151	3300018433	Grasslands Soil	RAWRFYQGRDTQRVDAHTRKPAQAEAWYVEPAGYEGIVLYSEPFVTRDEAETWAQAQDTQ
Ga0066662_102996023	3300018468	Grasslands Soil	AQDQQRRPWRFYQGRETPRVDAHTRKPAQAEAWYAEPAEYDGIVLYSEPFVTRDEAETWAKAQGKP
Ga0180112_11599922	3300019238	Groundwater Sediment	VKTVARHAPQQDIHRAWRFFQGHDTQRVDAHTRKPARAEAWYAEPKDYESPVLYSEPFVMRDEAETWAKAQGNP
Ga0184643_12314281	3300019255	Groundwater Sediment	RKPAQAEAWYAEPANYDSNVLYSEPFVTREEAEAWAKAQEKKEGVLH
Ga0184642_10004611	3300019279	Groundwater Sediment	HTRKPAQAEAWYAEPANYDSNVLYSEPFVTREEVEAWAKAQEKK
Ga0184642_11278782	3300019279	Groundwater Sediment	WRFFQGHDTQRVDAHTRKPAQAEAWYAEPREYDSNVLYSEPFVTREEAEAWARAQDKP
Ga0184642_16515811	3300019279	Groundwater Sediment	TQRVDAHTRKPAQAEAWYAEPANYESNVLYSEPFVTREEAKAWAKAQEKK
Ga0184642_17237621	3300019279	Groundwater Sediment	RVDAHTRKPAQAEAWYAEPANYESNVLYSEPFVSREEAKAWALAQEKK
Ga0222625_13840181	3300022195	Groundwater Sediment	TPRVDAHTRKPARAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAEAQEKP
Ga0222625_18108221	3300022195	Groundwater Sediment	PWRVFQGQDTQQVDAHTRKPAQAEAWYVEPPDYDSNVLYSAPFVTRDEAETWAKAQDK
Ga0207712_113271071	3300025961	Switchgrass Rhizosphere	RDTYRVDAHTRKPAQAEAWYAEPREYESPVLYSEPFVTREEAEAWAQAQGKP
Ga0209152_102900681	3300026325	Soil	FYQGRETPRVDAHTRKPAQAEAWYVEPAEYEGIVLYSEPFVTRDEAETWAKAQDKP
Ga0209382_115223671	3300027909	Populus Rhizosphere	RGGWRFFQGRDTYRVDAHTRKPARAEAWYVEPREYDSNVLYSEPFVTREEAEAWARAQDK
Ga0307278_102968091	3300028878	Soil	GQDTQQVDAHTRKPAQAEAWYAEPPDYDSNVLYSAPFVTREEAETWAKAQDK
Ga0247613_100071362	3300030610	Soil	HFFQGHDTQRVDAHTRKPARAEAWYAEPKDYESPVLYSEPFVTRDEAETWAQAQDKP
Ga0308203_10471191	3300030829	Soil	RFFQGRDTPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAEGQGKP
Ga0308203_10950731	3300030829	Soil	TQRLDAHTRKPAQAEAWYAEPREYDSNVLYSEPFVTRDEAETWAKAQGKP
Ga0308205_10080362	3300030830	Soil	RWRFFQGRDTPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAELWAAAQRKP
Ga0102749_14147512	3300030867	Soil	AEAWYVEPKNYQSIVLYSEPFVTREEAEAWARVQDQP
Ga0308206_10051342	3300030903	Soil	AEAWYAEPPDYDSNVLYSTPFVTREEAESWARAQEK
Ga0308206_10495762	3300030903	Soil	ETRQAHQQELSRGWRFFQGRDTPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAEGQGKP
Ga0308206_10652631	3300030903	Soil	RKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAAAQEKP
Ga0308206_10795541	3300030903	Soil	DTPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAELWAAAQRKP
Ga0308206_11391383	3300030903	Soil	FQGRDTPRVDAHTRKPAQAEAWYAEPREYDSPVLYSEPFVTRDEAEVWAEAQGKP
Ga0308206_11440281	3300030903	Soil	TQRVDAHTRKPAQAEAWYAEPANYDSIVLYSEPFVTREEAEAWAKAQEKK
Ga0308190_10525451	3300030993	Soil	HQRELSRGWRFFQGRDTPRVDAHTRKPAQAEAWYAEPREYDSPVLYSEPFVTRDEAELWAAAQGKP
Ga0308189_102980471	3300031058	Soil	QGPTQPRHASQQERSQRWRFFQGHDTWRVDAHTRKPAQAEAGSVEPRAYDSGVLYSEPFVTRDEAEAWAEAQEKP
Ga0308189_104873511	3300031058	Soil	RKPAQAEAWYAEPREYDSNVLYSEPFVTRDEAETWAKAQGKP
Ga0308189_105603331	3300031058	Soil	FFQGHDTQRVDAHTRKPAQAEAWYAEPTNYDSNVLYSEPFVTREEAEAWAKAQEKKEGVL
Ga0308201_101077953	3300031091	Soil	MPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAEAQEKP
Ga0308204_100338212	3300031092	Soil	ELSRGWRFFQGRDTPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAEGQGKP
Ga0308204_100365461	3300031092	Soil	TQRVDAHTRKPAQAEAWYAEPPDYDSNVLYSTPFVTREEAESWARAQEK
Ga0308204_100372162	3300031092	Soil	RWRFFQGRDTPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAEAWAEGQGKP
Ga0308204_101013081	3300031092	Soil	HASQQERSQRWRFFQGHDTWRVDAHTRKPAQAEAWYVEPRAYDSGVLYSEPFVTRDEAEAWAEAQDKS
Ga0308204_101056973	3300031092	Soil	ELSRGWRFFQGRDTPRVDAHTRKPAQAEAWYAEPREYDSPVLYSEPFVTRDEAEVWAEAQGKP
Ga0308204_101347971	3300031092	Soil	RFFQGHETQRVDAHTRTPAQAEAWYAEPPDYDSNVLYSTPFVTREEAESWARAQEK
Ga0307499_101995751	3300031184	Soil	RFFQGRDTPRVDAHTRKPAQAEAWYAEPRAYDSPVLYSEPFVTRDEAERWAAAQGKP
Ga0306917_113400941	3300031719	Soil	VDAHTQKPPQAQAWYAEPKDYDSYVLYSAPFATRDEAEAWARAKGKP
Ga0318533_112559131	3300032059	Soil	RVDAHTRKPARAEAWYAEPREYDSNVLYSEPFVTREEAEAWARAQDKP
Ga0247830_110479801	3300033551	Soil	WRPTERRHGHQQELARRWHFFQGRDTYRVDAHTRKPAQAEAWYAEPREYESPVLYSEPFVTREEAEAWAQAQGKP
Ga0314782_210814_2_130	3300034661	Soil	RKPAQAEAWYVEPREYESPVLYSEPFVTREEAEAWAQAQGKP
Ga0314788_203120_1_120	3300034666	Soil	AQAEAWYAEPRAYDNPVLYSEPFVTRDEAEAWAKAQDTP
Ga0314788_203120_158_325	3300034666	Soil	MGGSRSRQRKAHTRKPAQAEAWYAEPRAYDRQVLYSEPFVTRDEAEAWAEAQEKP
Ga0314792_025050_982_1161	3300034667	Soil	AWRFVQGHDTQRVDAHTRKPARAEAWYAEPKDYESPVLYSEPFVTRDEAETWAKAQGKP
Ga0314792_045161_795_950	3300034667	Soil	DTYSVDAHTRKPAQAEAWYVEPREYESPVLYSEPFVTREEAEAWAQAQGKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097632

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences