Metagenome Family F097608

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097608
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	45 residues
Representative Sequence	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYAPCEEVFV
Number of Associated Samples	66
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	21.78 %
% of genes near scaffold ends (potentially truncated)	56.73 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.346 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (24.038 % of family members)
Environment Ontology (ENVO)	Unclassified (27.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (34.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.30% β-sheet: 0.00% Coil/Unstructured: 52.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00275	EPSP_synthase	5.77
PF01618	MotA_ExbB	3.85
PF13567	DUF4131	3.85
PF01326	PPDK_N	2.88
PF02073	Peptidase_M29	2.88
PF01970	TctA	2.88
PF01098	FTSW_RODA_SPOVE	1.92
PF01425	Amidase	1.92
PF08240	ADH_N	1.92
PF00391	PEP-utilizers	1.92
PF05935	Arylsulfotrans	1.92
PF02954	HTH_8	1.92
PF00108	Thiolase_N	1.92
PF00113	Enolase_C	1.92
PF00581	Rhodanese	1.92
PF01869	BcrAD_BadFG	1.92
PF00542	Ribosomal_L12	0.96
PF01066	CDP-OH_P_transf	0.96
PF14574	RACo_C_ter	0.96
PF05670	NFACT-R_1	0.96
PF13563	2_5_RNA_ligase2	0.96
PF00285	Citrate_synt	0.96
PF08448	PAS_4	0.96
PF01135	PCMT	0.96
PF13361	UvrD_C	0.96
PF00005	ABC_tran	0.96
PF06050	HGD-D	0.96
PF07885	Ion_trans_2	0.96
PF00211	Guanylate_cyc	0.96
PF09723	Zn-ribbon_8	0.96
PF01012	ETF	0.96
PF00037	Fer4	0.96
PF02518	HATPase_c	0.96
PF00905	Transpeptidase	0.96
PF02738	MoCoBD_1	0.96
PF02508	Rnf-Nqr	0.96
PF01797	Y1_Tnp	0.96
PF03952	Enolase_N	0.96
PF13237	Fer4_10	0.96
PF01841	Transglut_core	0.96
PF01464	SLT	0.96
PF00344	SecY	0.96
PF00072	Response_reg	0.96
PF13191	AAA_16	0.96
PF09719	C_GCAxxG_C_C	0.96
PF05402	PqqD	0.96
PF00497	SBP_bac_3	0.96
PF13458	Peripla_BP_6	0.96
PF04199	Cyclase	0.96
PF00293	NUDIX	0.96
PF01116	F_bP_aldolase	0.96
PF13792	Obsolete Pfam Family	0.96
PF00107	ADH_zinc_N	0.96
PF11578	DUF3237	0.96
PF00890	FAD_binding_2	0.96
PF04879	Molybdop_Fe4S4	0.96
PF02910	Succ_DH_flav_C	0.96
PF02424	ApbE	0.96
PF02754	CCG	0.96
PF01627	Hpt	0.96
PF00156	Pribosyltran	0.96
PF13507	GATase_5	0.96
PF14579	HHH_6	0.96
PF01558	POR	0.96
PF00378	ECH_1	0.96
PF00828	Ribosomal_L27A	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1784	TctA family transporter	General function prediction only [R]	2.88
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	2.88
COG0148	Enolase	Carbohydrate transport and metabolism [G]	2.88
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	2.88
COG3333	TctA family transporter	General function prediction only [R]	2.88
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.92
COG0772	Peptodoglycan polymerase FtsW/RodA/SpoVE	Cell cycle control, cell division, chromosome partitioning [D]	1.92
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	1.92
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.96
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.96
COG4657	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit	Energy production and conversion [C]	0.96
COG4660	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit	Energy production and conversion [C]	0.96
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.96
COG2209	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE	Energy production and conversion [C]	0.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.96
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	0.96
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	0.96
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.96
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.96
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.96
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.96
COG1775	Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB	Amino acid transport and metabolism [E]	0.96
COG1727	Ribosomal protein L18E	Translation, ribosomal structure and biogenesis [J]	0.96
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1347	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD	Energy production and conversion [C]	0.96
COG1293	Ribosome quality control (RQC) protein RqcH, Rqc2/NEMF/Tae2 family, contains fibronectin-(FbpA) and RNA- (NFACT) binding domains	Translation, ribosomal structure and biogenesis [J]	0.96
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.96
COG1014	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit	Energy production and conversion [C]	0.96
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.96
COG0372	Citrate synthase	Energy production and conversion [C]	0.96
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	0.96
COG0222	Ribosomal protein L7/L12	Translation, ribosomal structure and biogenesis [J]	0.96
COG0201	Preprotein translocase subunit SecY	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG0191	Fructose/tagatose bisphosphate aldolase	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.35 %
Unclassified	root	N/A	33.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.35 %
Unclassified	root	N/A	33.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.35 %
Unclassified	root	N/A	33.65 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.00 %
Unclassified	root	N/A	33.65 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.96 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	45.19 %
Unclassified	root	N/A	33.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.85 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.96 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	45.19 %
Unclassified	root	N/A	33.65 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.88 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira	0.96 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.65 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	18.27 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.88 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.92 %
Nitrospira bacterium SG8_3	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira → Nitrospira bacterium SG8_3	0.96 %
Desulfarculales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales	0.96 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.96 %
Desulfovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.65 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	12.50 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	4.81 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1.92 %
Desulfarculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae	0.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21	0.96 %
Candidatus Accumulibacter aalborgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	0.96 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	0.96 %
Desulfovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae	0.96 %
Nitrospira bacterium SG8_3	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira → Nitrospira bacterium SG8_3	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.65 %
Desulfatiglans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans	7.69 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	4.81 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	2.88 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1.92 %
Bilophila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Bilophila	0.96 %
Desulfarculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae	0.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21	0.96 %
Candidatus Accumulibacter aalborgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	0.96 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	0.96 %
Nitrospira bacterium SG8_3	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira → Nitrospira bacterium SG8_3	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.65 %
Desulfatiglans anilini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	7.69 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	4.81 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2.88 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1.92 %
Bilophila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Bilophila	0.96 %
Desulfarculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae	0.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21	0.96 %
Candidatus Accumulibacter aalborgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	0.96 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	0.96 %
Nitrospira bacterium SG8_3	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira → Nitrospira bacterium SG8_3	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000229\|TB_LI09_3DRAFT_1004385	All Organisms → cellular organisms → Bacteria → Proteobacteria	3797	Open in IMG/M
3300000309\|WSSedA1BaDRAFT_1014098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1326	Open in IMG/M
3300000310\|WSSedA1Ba2DRAFT_1033723	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300000311\|WSSedA1Ba3DRAFT_1060590	Not Available	740	Open in IMG/M
3300001279\|JGI20214J14112_1023504	Not Available	994	Open in IMG/M
3300001547\|JGI20215J15232_1005458	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1933	Open in IMG/M
3300002961\|JGI11641J44799_10001393	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7527	Open in IMG/M
3300002961\|JGI11641J44799_10021688	All Organisms → cellular organisms → Bacteria	1920	Open in IMG/M
3300002961\|JGI11641J44799_10029022	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1634	Open in IMG/M
3300002961\|JGI11641J44799_10062465	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300003432\|JGI20214J51088_10002599	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11979	Open in IMG/M
3300003432\|JGI20214J51088_10010098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	6269	Open in IMG/M
3300003432\|JGI20214J51088_10239563	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300003541\|JGI20214J51650_10005048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8221	Open in IMG/M
3300003858\|Ga0031656_10005705	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	5149	Open in IMG/M
3300003859\|Ga0031653_10055038	Not Available	1068	Open in IMG/M
3300003910\|JGI26437J51864_10000516	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	9916	Open in IMG/M
3300003910\|JGI26437J51864_10000654	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	8482	Open in IMG/M
3300004048\|Ga0055494_10003531	Not Available	1889	Open in IMG/M
3300004050\|Ga0055491_10063908	Not Available	852	Open in IMG/M
3300004079\|Ga0055514_10046397	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	927	Open in IMG/M
3300005213\|Ga0068998_10106239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	632	Open in IMG/M
3300005219\|Ga0069004_10053946	Not Available	940	Open in IMG/M
3300005832\|Ga0074469_10098155	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15874	Open in IMG/M
3300006224\|Ga0079037_100778329	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	938	Open in IMG/M
3300006224\|Ga0079037_102051661	Not Available	571	Open in IMG/M
3300006224\|Ga0079037_102355256	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006930\|Ga0079303_10006272	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3382	Open in IMG/M
3300006930\|Ga0079303_10348796	Not Available	619	Open in IMG/M
3300009078\|Ga0105106_10435344	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	945	Open in IMG/M
3300009087\|Ga0105107_10188185	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	1448	Open in IMG/M
3300009091\|Ga0102851_10041849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	3605	Open in IMG/M
3300009091\|Ga0102851_12830202	Not Available	557	Open in IMG/M
3300009111\|Ga0115026_10058046	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	2179	Open in IMG/M
3300009153\|Ga0105094_10683708	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300009153\|Ga0105094_10890428	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300009166\|Ga0105100_10249018	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Bilophila	1062	Open in IMG/M
3300009167\|Ga0113563_10160851	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2177	Open in IMG/M
3300009167\|Ga0113563_11074112	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	930	Open in IMG/M
3300009167\|Ga0113563_11201165	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	883	Open in IMG/M
3300009167\|Ga0113563_11425551	Not Available	814	Open in IMG/M
3300009167\|Ga0113563_13790653	Not Available	512	Open in IMG/M
3300009179\|Ga0115028_10809583	Not Available	730	Open in IMG/M
3300009509\|Ga0123573_10225496	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1839	Open in IMG/M
3300009509\|Ga0123573_11159161	Not Available	721	Open in IMG/M
3300010412\|Ga0136852_10636770	Not Available	1026	Open in IMG/M
3300010413\|Ga0136851_10856701	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	888	Open in IMG/M
3300010413\|Ga0136851_11176776	Not Available	742	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10019932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	7756	Open in IMG/M
3300018070\|Ga0184631_10127457	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1012	Open in IMG/M
3300018070\|Ga0184631_10418002	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	552	Open in IMG/M
(restricted) 3300024054\|Ga0233425_10110711	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
(restricted) 3300024054\|Ga0233425_10111643	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira → Nitrospira bacterium SG8_3	1539	Open in IMG/M
(restricted) 3300024054\|Ga0233425_10122017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1436	Open in IMG/M
3300025966\|Ga0210105_1002215	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2930	Open in IMG/M
3300027715\|Ga0208665_10137723	Not Available	761	Open in IMG/M
3300027715\|Ga0208665_10251427	Not Available	556	Open in IMG/M
3300027796\|Ga0209373_10283151	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	679	Open in IMG/M
3300027871\|Ga0209397_10027521	Not Available	1885	Open in IMG/M
3300027877\|Ga0209293_10164241	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300027877\|Ga0209293_10382052	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300027887\|Ga0208980_10061033	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300027887\|Ga0208980_10261995	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae	1005	Open in IMG/M
3300027887\|Ga0208980_10484850	Not Available	710	Open in IMG/M
3300027900\|Ga0209253_10001640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	19701	Open in IMG/M
3300027979\|Ga0209705_10012042	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	4715	Open in IMG/M
3300031577\|Ga0316602_10014679	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1242	Open in IMG/M
3300031834\|Ga0315290_10168605	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300031873\|Ga0315297_10215525	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21	1584	Open in IMG/M
3300032143\|Ga0315292_10350922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1234	Open in IMG/M
3300032163\|Ga0315281_10268906	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1873	Open in IMG/M
3300032163\|Ga0315281_10395005	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300032163\|Ga0315281_11047297	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	824	Open in IMG/M
3300032177\|Ga0315276_10714963	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300032177\|Ga0315276_11686672	Not Available	654	Open in IMG/M
3300032397\|Ga0315287_10223654	Not Available	2203	Open in IMG/M
3300032401\|Ga0315275_10108604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3047	Open in IMG/M
3300033408\|Ga0316605_10018183	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4401	Open in IMG/M
3300033408\|Ga0316605_10361965	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300033408\|Ga0316605_10396900	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	1243	Open in IMG/M
3300033418\|Ga0316625_100491523	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	964	Open in IMG/M
3300033433\|Ga0326726_10856380	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300033434\|Ga0316613_11090892	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	550	Open in IMG/M
3300033481\|Ga0316600_10279191	Not Available	1117	Open in IMG/M
3300033481\|Ga0316600_10321053	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1047	Open in IMG/M
3300033482\|Ga0316627_100011232	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	4196	Open in IMG/M
3300033482\|Ga0316627_100484904	Not Available	1092	Open in IMG/M
3300033483\|Ga0316629_10174001	Not Available	1335	Open in IMG/M
3300033486\|Ga0316624_10901611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	792	Open in IMG/M
3300033487\|Ga0316630_10848576	Not Available	787	Open in IMG/M
3300033487\|Ga0316630_12163539	Not Available	513	Open in IMG/M
3300033488\|Ga0316621_10230442	Not Available	1176	Open in IMG/M
3300033488\|Ga0316621_10688803	Not Available	737	Open in IMG/M
3300033489\|Ga0299912_10074021	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	2985	Open in IMG/M
3300033513\|Ga0316628_100348717	Not Available	1862	Open in IMG/M
3300033513\|Ga0316628_103848924	Not Available	538	Open in IMG/M
3300033521\|Ga0316616_102437441	Not Available	700	Open in IMG/M
3300033557\|Ga0316617_100654883	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300033557\|Ga0316617_101036658	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	804	Open in IMG/M
3300033557\|Ga0316617_101437519	Not Available	693	Open in IMG/M
3300033557\|Ga0316617_102682055	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	518	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	70.19%
Terrestrial	Environmental → Terrestrial	29.81%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	42.31%
Soil	Environmental → Terrestrial → Soil	25.00%
Marine	Environmental → Aquatic → Marine	20.19%
Sediment	Environmental → Aquatic → Sediment	7.69%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	3.85%
Peat	Environmental → Terrestrial → Peat	0.96%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	24.04%
Wetlands	Environmental → Aquatic → Marine → Wetlands	20.19%
Lake	Environmental → Aquatic → Freshwater → Lake	13.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	10.58%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.69%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.77%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	3.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.92%
Pond	Environmental → Aquatic → Freshwater → Pond	0.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	24.04%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	14.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	10.58%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	9.62%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.69%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	5.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Cave Water	Environmental → Aquatic → Freshwater → Groundwater → Cave Water	0.96%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	24.04%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	14.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	9.62%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	9.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.77%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	5.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.77%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	4.81%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	4.81%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.85%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	3.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Wetland	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Wetland	0.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.96%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000229	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3	Environmental	Open in IMG/M
3300000309	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300000310	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300000311	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300001279	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300001547	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site C1 Bulk	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300003859	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR	Environmental	Open in IMG/M
3300003910	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW	Environmental	Open in IMG/M
3300004048	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2	Environmental	Open in IMG/M
3300004050	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2	Environmental	Open in IMG/M
3300004079	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005219	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2	Environmental	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300010413	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9	Environmental	Open in IMG/M
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300024054 (restricted)	Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_140_MG	Environmental	Open in IMG/M
3300025966	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027796	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300031577	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
TB_LI09_3DRAFT_10043852	3300000229	Groundwater	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLSFCAPWEEVLV*
WSSedA1BaDRAFT_10140985	3300000309	Wetland	ENRMSNVEQGISNDKVNSLLFFPSAFVIRYSIFCGSFLNWYAACEEVFVQDS*
WSSedA1Ba2DRAFT_10337232	3300000310	Wetland	LAATKRKYETRMSNIEQGISNDEVKPVFPSTFDIRYSIFCGSLLNFNAACEEILV*
WSSedA1Ba3DRAFT_10605902	3300000311	Wetland	ETRMSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYAACEEVFAEGAKFLN*
JGI20214J14112_10235042	3300001279	Wetland	MSNIEQGIPNDEVKSRLLFPSTFVIRHSILCGSLLNFYTAC
JGI20215J15232_10054582	3300001547	Wetland	MSNFEQGMSNGEVKSFVFFPSAFDIRYSIFCRSFLNFCTPNKAVPI*
JGI11641J44799_1000139310	3300002961	Wetland	MSNIEQGISNDEVKPILLFPSAFDIRYSTFCGSLLNFYAACVEIFV*
JGI11641J44799_100216882	3300002961	Wetland	MSNIEQGISNDEVKPVFPSTFDIRYSIFCGSLLNFNAACEEILV*
JGI11641J44799_100290224	3300002961	Wetland	KPENRMSNVEQGISNDKVNSLLFFPSAFVIRYSIFCGSFLNWYAACEEVFVQDS*
JGI11641J44799_100624651	3300002961	Wetland	MSNIEQEISNHEVKSFLFFPSAFVIRYSIFCGSLFNFHAAREEVFV*
JGI20214J51088_100025999	3300003432	Wetland	MLNVEKGISNDEVKSLLLFPSAFVIRYSIFYGSLLNFSKHH*
JGI20214J51088_100100985	3300003432	Wetland	MSNIEQGISNDEVKPILXFPSAFDIRYSTFCGSLLNFYAACVEIFV*
JGI20214J51088_102395632	3300003432	Wetland	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYAACEEDFAEGAKFLN*
JGI20214J51650_100050481	3300003541	Wetland	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYAACEEVFAEGAKFLN*
Ga0031656_100057055	3300003858	Freshwater Lake Sediment	MSNIEQGISNDKVKSLLFLPSAFVIRYSIFCGSFLNFYAPFEEVLF*
Ga0031653_100550382	3300003859	Freshwater Lake Sediment	MSNIEQGISNDKVKSLLFLPSAFVIRYSIFCGSFLNFYXPFEEVLX*
JGI26437J51864_100005169	3300003910	Freshwater Lake Sediment	MPNIEQGILNDEGKSLLLFPSVFAIHYSIFCGSLLSFXAACGEATV*
JGI26437J51864_100006544	3300003910	Freshwater Lake Sediment	MSNIEQGIPNDEVKSLLLFPSAFVIGYSIFCGSLLNFYAACEEVFV*
JGI26437J51864_100028952	3300003910	Freshwater Lake Sediment	MSNVEQEISNDEVKSFLLFVSEFDIRYSIFCGLLLNFYEALLAADGCEEVFG*
Ga0055494_100035311	3300004048	Natural And Restored Wetlands	MSNVEQGISNDEVKSLLLFRSAFVIRYSIFCGSLLNFRAACGEVTG*
Ga0055491_100639081	3300004050	Natural And Restored Wetlands	NVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLGFYPACEEVLV*
Ga0055514_100463971	3300004079	Natural And Restored Wetlands	NVEQGIPNYEVKSLLLFPSAFDICSSIFCGSLLNFNVPCEEVLV*
Ga0068998_101062391	3300005213	Natural And Restored Wetlands	RMSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYAARAEVTSQRPPA*
Ga0069004_100539461	3300005219	Natural And Restored Wetlands	MSNIEQGISNDGVKSLLFLPSAFVIRYSIFCGSFLNFYAACEEAF
Ga0074469_1009815511	3300005832	Sediment (Intertidal)	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLGFYPACEEVLV*
Ga0079037_1007783292	3300006224	Freshwater Wetlands	MLNVEQGISNDEVKSLLLVPSAFVIRYSTFYGSLLNFSKHY*
Ga0079037_1020516611	3300006224	Freshwater Wetlands	KHETRMSNVEQGISNDEVKSFLLFPSAFVIRYSIFCGSFLDLHADCEEVFV*
Ga0079037_1023552561	3300006224	Freshwater Wetlands	MPNIEQGILNDEGKSLLLFPSVFAIHYSIFCGSLLSF
Ga0079303_100062722	3300006930	Deep Subsurface	MLNVEQGISNAEVKSLLLVPSAFVIRYSTFYGSLLNFSKHH*
Ga0079303_103487962	3300006930	Deep Subsurface	NHETRISNIEQGISNHEVTPSLAFPSVFDIRYSIFCGSLLNFYAACVEVTD*
Ga0105106_104353443	3300009078	Freshwater Sediment	ETRMSNVEQGISNDEVKSLLLFPSAFVIRYSTFCGSFLSFCAAFREATG*
Ga0105107_101881853	3300009087	Freshwater Sediment	SNSNVEQGISNDEVKSLLLSPSAFDIRYSIFCGSLLSFYAACGKITR*
Ga0102851_100418495	3300009091	Freshwater Wetlands	MSNVEQEISNGEVKSFLLFVSEFDIRYSIFCGLLLNFYEALLAADGC
Ga0102851_128302022	3300009091	Freshwater Wetlands	SNVEQGISNDEVKSFLLFPSAFVIRYSIFCGSFLDLHADCEEVFV*
Ga0115026_100580461	3300009111	Wetland	AEPRMLNVEQGISNAEVKSLLLVPSALVIRYSTFYGSLLNFSKHH*
Ga0105094_106837082	3300009153	Freshwater Sediment	NSETRMSNIEQGISNDEVKPLFLFPLAFDIRYSIFCGSLLNFSASCEEVSV*
Ga0105094_108904282	3300009153	Freshwater Sediment	SNVEQGISNDEVKPLLLFPSAFFIRYSIFYGSLLNFFANKTRA*
Ga0105100_102490181	3300009166	Freshwater Sediment	GISNDEVKSLLLFPSAFVIRYSIFCGSLLSFYALCEEVSA*
Ga0113563_101608512	3300009167	Freshwater Wetlands	MLNVEQGISNDEVKSLLLVPSAFVIRYSTFYGSLLNFSKHH*
Ga0113563_110741121	3300009167	Freshwater Wetlands	RFSNIEQEISNDQVKPCLLFDSVFDIRYSIFCGWLLIFYKACRDVTG*
Ga0113563_112011652	3300009167	Freshwater Wetlands	MSHVEQGISNDEVKSLLLFPSAFAIRYSIFSGSPLSFSAPWEEILI*
Ga0113563_114255512	3300009167	Freshwater Wetlands	MSNIEQGISNDEVNPFLSFDLRYWIFYGSLLNFYAACEEVFG*
Ga0113563_137906531	3300009167	Freshwater Wetlands	HETRMSNVEQGISNDEVKSFLLFPSAFVIRYSIFCGSFLDLHADCEEVFV*
Ga0115028_108095831	3300009179	Wetland	GISNDEVKSFLLFPSAFVIRYSIFCGSFLNLHADCEEVFV*
Ga0123573_102254963	3300009509	Mangrove Sediment	MSNVEQGISNDEVKSLLWFPSAFDIRYSIFCGSLLNFYAACEQV
Ga0123573_111591612	3300009509	Mangrove Sediment	MSNIEQKISKDDVISLVLFPSAFIIRYSVFCCSLLNSD
Ga0136852_106367701	3300010412	Mangrove Sediment	MSNVEQGISNDEVKSLLWFPSAFDIRYSIFCGSLLNFYAACEQVLV*
Ga0136851_108567012	3300010413	Mangrove Sediment	MSNVEQGISNDEVKSLLLFPSVFDIRYSIFCGWLLGFYAACEEVFV*
Ga0136851_111767762	3300010413	Mangrove Sediment	MSNVEQGISNDEDKSLVLFPSAFVIRNSIFCGSLLNFYATRKEVFT
(restricted) Ga0172375_100199323	3300013137	Freshwater	MSNIEQGISNDEVKSSILFPSEFDIRYSIFCGLLLSF*
Ga0184631_101274571	3300018070	Groundwater Sediment	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLFNFYTAREEVFV
Ga0184631_104180021	3300018070	Groundwater Sediment	MSNVEQGISNDEVKFFLLSPSEFGIRYSIFCGSLSNFF
(restricted) Ga0233425_101107112	3300024054	Freshwater	MSNIEQEISKDEVKPVLLFPSAFDIRYSIFCGSLLNFYAARKEIFG
(restricted) Ga0233425_101116433	3300024054	Freshwater	MSNIEQGISNDEVKPVLFFPSAFDIRYSIFCGSLLNFYAACVEGTD
(restricted) Ga0233425_101220171	3300024054	Freshwater	MSNIEQGISNDEVKPVLFFPSAFDIRYSIFCGSLLNFFAACVEVTD
Ga0210105_10022152	3300025966	Natural And Restored Wetlands	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLGFYPACEEVLV
Ga0208665_101377232	3300027715	Deep Subsurface	KKHQTRMSNIEQGISNDEVKSLLLFPSAFVIRYSIFCGSFLNFCALCEEVLL
Ga0208665_102514271	3300027715	Deep Subsurface	MSNIEQKISNDEVKSLFLSPSAFDIRYSIFFSSLW
Ga0209373_102831511	3300027796	Freshwater	MSNIEQGISNDEVKPLLLFPSAFDIRNSIFCGSLSNFS
Ga0209397_100275211	3300027871	Wetland	MSNVEQEISNDEVKSFLLFVSEFDIRYSIFCGLLLNFYEALLAADGCEEVFG
Ga0209293_101642411	3300027877	Wetland	MPNIEQGILNDEGKSLLLFPSVFAIHYSIFCGSLLSFFAACGE
Ga0209293_103820521	3300027877	Wetland	LNDEGKSLLLFPSVFAIHYSIFCGSLLSFCAACGEATV
Ga0208980_100610332	3300027887	Wetland	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYAACEEVFAEGAKFLN
Ga0208980_102619952	3300027887	Wetland	MSNIEQGISNDEVKPILLFPSAFDIRYSTFCGSLLNFYAACVEIFV
Ga0208980_104848502	3300027887	Wetland	MSVEIPNVEQGISNDEVKSLLWFRSAFVIRYSAVYTPPAVSLSSFYAACEKAFA
Ga0209253_1000164014	3300027900	Freshwater Lake Sediment	MSNIEQGISNDKVKSLLFLPSAFVIRYSIFCGSFLNFYAPFEEVLF
Ga0209705_100120424	3300027979	Freshwater Sediment	MSNVEQGISNDEVKFFLFFPSEFIIRYSIFCGSLSNFSTSCEE
Ga0316602_100146791	3300031577	Soil	SNIEQGISKDEVKPCLLFPSVFDIRYSIFCGSLLIFYKACRDVTG
Ga0315290_101686052	3300031834	Sediment	MSNIEQEISNDEVKSLLFLPSAFVIRYSIFCGSFLNFYAPFEEVLF
Ga0315297_102155252	3300031873	Sediment	MSNFEQGISNDEVKSLLLFPSAFVIRYSIFCGSLFNFYTAREEVFV
Ga0315292_103509222	3300032143	Sediment	MSNIEQGISNDEVKSLFLFPLAFDIRYSIFCGSLSNFSASCKEVSV
Ga0315281_102689061	3300032163	Sediment	ETRMSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSPLSVYAACRELTG
Ga0315281_103950051	3300032163	Sediment	QTRMSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLSFCAPWEEVFV
Ga0315281_110472973	3300032163	Sediment	VEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYSTCGEITG
Ga0315276_107149632	3300032177	Sediment	MSNVEQGISNDEVKSLLFLPSAFVIRYSIFFGSILNFFEACREITD
Ga0315276_116866721	3300032177	Sediment	MSNIEQGISNDEVKSLLFLPSAFVIRYSIFCGSFLNFYAPFEEVLF
Ga0315287_102236541	3300032397	Sediment	DPQTRMSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLSFCAPWEEVFV
Ga0315275_101086042	3300032401	Sediment	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLSFCAPWEEVFV
Ga0316605_100181833	3300033408	Soil	MSNIEQGIPNDEVKSLLLFPSAFVIGYSIFCGSLLNFYAACEE
Ga0316605_103619651	3300033408	Soil	ETRMSNIEQRISNDEVKPLLLLPSAFEIRYSVFCGSHLTFYAACAETTD
Ga0316605_103969001	3300033408	Soil	SNLIRKARMSNIEQGIPNDEVKSLLLFPSAFVIGYSIFCGSLLNFYAACEEVFV
Ga0316622_1006466351	3300033416	Soil	MSNVEQEISNGEVKSFLLFVSEFDIRYSIFCGLLLN
Ga0316625_1004915231	3300033418	Soil	NPETRMSNVEQGISNDEVRSSLFFPSAFGIRYSIFCGSLLSF
Ga0326726_108563801	3300033433	Peat Soil	RETRMSNAEQRISNDEVNFFLLFPSEFIICYSIFCGSLLNIYA
Ga0316613_110908921	3300033434	Soil	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYAPCEEVFV
Ga0316600_102791912	3300033481	Soil	ARGDQGISNDEVKFPRVFPSVFVIRYSTFCGSFLNFGANSE
Ga0316600_103210532	3300033481	Soil	KSETRMSNIEQGIPNDEVKSFLSFLSDFVIRYSIFCGSILGIQASYI
Ga0316627_1000112326	3300033482	Soil	MMTNSETRMSNIEQRISNDEVKPLLLLPSAFEIRYSIFCGSHLTFYA
Ga0316627_1004849042	3300033482	Soil	MLNVEQGISNDEVKSLLLFPSAFVLRYSTFYGSLLNFSKHH
Ga0316629_101740012	3300033483	Soil	MLNVEQGISNDEVKSLLLVPSAFVIRYSTFYGSLLNFSKHY
Ga0316626_119407932	3300033485	Soil	GISNDEAKSFLSFLSDFVIRYSIFCGSILGIQASYI
Ga0316624_109016112	3300033486	Soil	MLNVEQGISNDEVKSLLLVPSAFVIRYSTFYGSLLNFSKHH
Ga0316630_108485762	3300033487	Soil	NANVEQGISNDEVKSFLLFPSAFVIRYSIFCGSFLNLHADCEEVFV
Ga0316630_121635391	3300033487	Soil	NVEQGISNDEVKSLLLVPSAFVIRYSTFYGSLLNFSKHH
Ga0316621_102304422	3300033488	Soil	MSNIEQKISNDEVKSLFLSPSAFDIRYSIFFSSLWNSFAT
Ga0316621_106888032	3300033488	Soil	NIEQGISNNEVKALSCFPSGFIILYSTFCGSLSNFYASNTEA
Ga0299912_100740215	3300033489	Soil	MSNIEQGISNDEVKSLLLFPSAFVIRYSIFCGSLFNFYAALEEV
Ga0316628_1003487172	3300033513	Soil	MLNVEQGISNDEVKSLLLFPSAFVIRYSIFYGSLLNFSKHH
Ga0316628_1038489242	3300033513	Soil	SNVEQEISNDEVKSFLLFVSEFDIRYSIFCGLLLNFYEALLAADGCEEVFG
Ga0316616_1024374412	3300033521	Soil	MWNVEQGISNDEVKSFLLFPSAFVIRYSIFCGSFLNLHADCEE
Ga0316617_1006548831	3300033557	Soil	MSNIEQRMSNDEVKTLCLFPSVFDIRYSIFCGSLLVFFSACAEVTTYN
Ga0316617_1010366581	3300033557	Soil	EPRMLNVEQGISNDEGKSLLLFPSAFVLRYSTFYGSLLNFSKHH
Ga0316617_1014375191	3300033557	Soil	MSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYATREE
Ga0316617_1026820552	3300033557	Soil	AATKLEYLNSNVEQGISNDEVKSLLLFPSAFVIRYSIFCGSLLNFYATREEVFV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters