Metagenome / Metatranscriptome Family F097582

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097582
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	67 residues
Representative Sequence	ILDITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGEGYFAAMAQKYKR
Number of Associated Samples	85
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	98.08 %
% of genes from short scaffolds (< 2000 bps)	93.27 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.192 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.346 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.231 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.78% β-sheet: 0.00% Coil/Unstructured: 60.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF03401	TctC	9.62
PF13343	SBP_bac_6	1.92
PF01522	Polysacc_deac_1	0.96
PF01557	FAA_hydrolase	0.96
PF14748	P5CR_dimer	0.96
PF13685	Fe-ADH_2	0.96
PF01425	Amidase	0.96
PF00355	Rieske	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	9.62
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.19 %
Unclassified	root	N/A	3.85 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	91.35 %
Unclassified	root	N/A	3.85 %
Candidatus Thermoplasmatota	phylum	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	77.88 %
Unclassified	root	N/A	3.85 %
Thermoplasmata	class	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.85 %
Unclassified	root	N/A	3.85 %
Methanomassiliicoccales	order	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
unclassified Methanomassiliicoccales	no rank	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales	0.96 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.96 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.85 %
Methanomassiliicoccales archaeon PtaU1.Bin124	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon PtaU1.Bin124	0.96 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.96 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.85 %
unclassified Beijerinckia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia	0.96 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.96 %
Methanomassiliicoccales archaeon PtaU1.Bin124	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon PtaU1.Bin124	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.85 %
Beijerinckia sp. 28-YEA-48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	0.96 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.96 %
Methanomassiliicoccales archaeon PtaU1.Bin124	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon PtaU1.Bin124	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_117765904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300004463\|Ga0063356_104772387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300004633\|Ga0066395_10461934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300005330\|Ga0070690_101003263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300005331\|Ga0070670_100021274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5581	Open in IMG/M
3300005332\|Ga0066388_100959881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1424	Open in IMG/M
3300005332\|Ga0066388_104801519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300005332\|Ga0066388_107610074	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300005353\|Ga0070669_101704703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300005406\|Ga0070703_10345743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300005457\|Ga0070662_101003163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
3300005713\|Ga0066905_100928462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	763	Open in IMG/M
3300005713\|Ga0066905_102108353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300005764\|Ga0066903_102457735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300005764\|Ga0066903_104573485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300005764\|Ga0066903_104584640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300005764\|Ga0066903_107009389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300006038\|Ga0075365_10350138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1041	Open in IMG/M
3300006038\|Ga0075365_10865283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300006237\|Ga0097621_100051870	All Organisms → cellular organisms → Bacteria → Proteobacteria	3339	Open in IMG/M
3300006580\|Ga0074049_13203741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300006844\|Ga0075428_100874938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	953	Open in IMG/M
3300006845\|Ga0075421_101988023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300006847\|Ga0075431_100558553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300006852\|Ga0075433_11475420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300006880\|Ga0075429_101297651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300006881\|Ga0068865_101840111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300006903\|Ga0075426_10997670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300006953\|Ga0074063_14274158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1692	Open in IMG/M
3300009088\|Ga0099830_11358075	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300009147\|Ga0114129_11928297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300009162\|Ga0075423_10905476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300009792\|Ga0126374_11134223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300009792\|Ga0126374_11174834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300009792\|Ga0126374_11186424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300010043\|Ga0126380_11624094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300010046\|Ga0126384_10820289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300010046\|Ga0126384_10870298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	812	Open in IMG/M
3300010359\|Ga0126376_12737031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300010359\|Ga0126376_12772156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300010362\|Ga0126377_12974741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300010366\|Ga0126379_13766535	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300010376\|Ga0126381_101768767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	892	Open in IMG/M
3300010376\|Ga0126381_102860913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300010398\|Ga0126383_10436141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1356	Open in IMG/M
3300010398\|Ga0126383_12831862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300010863\|Ga0124850_1053770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1257	Open in IMG/M
3300011119\|Ga0105246_11031468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300011119\|Ga0105246_11128261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300011119\|Ga0105246_12055101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300012096\|Ga0137389_10007151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	7257	Open in IMG/M
3300012514\|Ga0157330_1027188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	694	Open in IMG/M
3300012951\|Ga0164300_10171712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1036	Open in IMG/M
3300012960\|Ga0164301_10395915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	965	Open in IMG/M
3300013306\|Ga0163162_13042883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300014969\|Ga0157376_11198469	Not Available	787	Open in IMG/M
3300015264\|Ga0137403_10752440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	833	Open in IMG/M
3300016341\|Ga0182035_10741082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300016357\|Ga0182032_11629424	Not Available	562	Open in IMG/M
3300017965\|Ga0190266_10275516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300018066\|Ga0184617_1011966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1761	Open in IMG/M
3300018073\|Ga0184624_10069115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1468	Open in IMG/M
3300018431\|Ga0066655_11324569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300018469\|Ga0190270_10437625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1224	Open in IMG/M
3300018469\|Ga0190270_11664251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300018476\|Ga0190274_10858558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300019767\|Ga0190267_11651692	Not Available	504	Open in IMG/M
3300021086\|Ga0179596_10169484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1049	Open in IMG/M
3300021560\|Ga0126371_11636623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300022756\|Ga0222622_10918216	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300025290\|Ga0207673_1060281	Not Available	540	Open in IMG/M
3300025923\|Ga0207681_11516837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300026524\|Ga0209690_1101855	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon PtaU1.Bin124	1172	Open in IMG/M
3300027527\|Ga0209684_1049552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300028721\|Ga0307315_10236577	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300028782\|Ga0307306_10053985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1005	Open in IMG/M
3300028875\|Ga0307289_10094749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1216	Open in IMG/M
3300028876\|Ga0307286_10041369	All Organisms → cellular organisms → Bacteria → Proteobacteria	1545	Open in IMG/M
3300028878\|Ga0307278_10478183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031544\|Ga0318534_10803421	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300031549\|Ga0318571_10180890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300031561\|Ga0318528_10436047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300031562\|Ga0310886_10268938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	962	Open in IMG/M
3300031573\|Ga0310915_10922291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300031719\|Ga0306917_10104958	All Organisms → cellular organisms → Bacteria → Proteobacteria	2034	Open in IMG/M
3300031719\|Ga0306917_10122468	All Organisms → cellular organisms → Bacteria → Proteobacteria	1896	Open in IMG/M
3300031744\|Ga0306918_10104433	All Organisms → cellular organisms → Bacteria → Proteobacteria	2023	Open in IMG/M
3300031744\|Ga0306918_10513400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300031747\|Ga0318502_10019320	All Organisms → cellular organisms → Bacteria → Proteobacteria	3271	Open in IMG/M
3300031769\|Ga0318526_10333201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300031781\|Ga0318547_10186439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1234	Open in IMG/M
3300031793\|Ga0318548_10009511	All Organisms → cellular organisms → Bacteria → Proteobacteria	3768	Open in IMG/M
3300031796\|Ga0318576_10109260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1268	Open in IMG/M
3300031821\|Ga0318567_10164228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1231	Open in IMG/M
3300031860\|Ga0318495_10504435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300031894\|Ga0318522_10415714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300032012\|Ga0310902_10657446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300032025\|Ga0318507_10058435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1535	Open in IMG/M
3300032054\|Ga0318570_10215070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	869	Open in IMG/M
3300032064\|Ga0318510_10264228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	710	Open in IMG/M
3300032066\|Ga0318514_10452582	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300032066\|Ga0318514_10567300	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300032174\|Ga0307470_11765113	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300032261\|Ga0306920_102754856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.88%
Host-Associated	Host-Associated	22.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.00%
Plants	Host-Associated → Plants	22.12%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Sediment	Environmental → Aquatic → Sediment	2.88%
Roots	Host-Associated → Plants → Roots	2.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.58%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1177659042	3300002568	Soil	PKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR*
Ga0063356_1047723872	3300004463	Arabidopsis Thaliana Rhizosphere	TYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGEGYFAAMAQKYKR*
Ga0066395_104619341	3300004633	Tropical Forest Soil	QSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR*
Ga0070690_1010032631	3300005330	Switchgrass Rhizosphere	KILDITYNDFKAQSPSNIEISRPGAENILAQFQGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0070670_1000212747	3300005331	Switchgrass Rhizosphere	VLAKELKITDPKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR*
Ga0066388_1009598811	3300005332	Tropical Forest Soil	ELKIADPKILDITYADFKAQSPANIEVSRQGAENILAQFPGGSQKVEDYVDLSLLEALRNEGYFAAMQRKYKR*
Ga0066388_1048015191	3300005332	Tropical Forest Soil	SDERRAKAVLAKELKITDPKILDITYNDFKAQSPANIEISQPGVGNILAQFPGGSRKVEDYVDASLLAALASEGYFTAMQQKYRR*
Ga0066388_1076100741	3300005332	Tropical Forest Soil	ALSDEARAKAVLTKELKIGDPKVLDITYNDFRAQSPVNLEISRPGAENILALFPGGSQKVDDYVDTSLLEALRSEGYFTAMAKKYRR*
Ga0070669_1017047031	3300005353	Switchgrass Rhizosphere	ILDITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0070703_103457432	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	ILDITYNDFKAQSPSNIEISRPGAENILAQFQGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0070662_1010031632	3300005457	Corn Rhizosphere	DPKILDITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0066905_1009284622	3300005713	Tropical Forest Soil	TYRDFKAQSPANLEISRPGAENILAQFPGGSAKVEDYVDTGLLEALRSDGYFAAMAQKYRR*
Ga0066905_1021083532	3300005713	Tropical Forest Soil	ILDITYRDFKAQSPANLEISRPGAENILAQFPGGSAKVEDYVDTGLLEALRSEGYFAAMAQKYKR*
Ga0066903_1024577352	3300005764	Tropical Forest Soil	LKGTIEGNHLALTDEGRAKEVLAKELKISDPSILDIAYRDFKAQSPANLEISRPGAENILAQFPGGSAKIEDYVDTGLLEALRSDGYFAAMAQKYKR*
Ga0066903_1045734852	3300005764	Tropical Forest Soil	LKGTIEGNHLALTDEGRAKEVLAKELKISDPSILDIAYRDFKAQSPANLEISRPGAENILAQFPGGSAKVEDYVDTGLLEALRSDGYFAAMAQKYKR*
Ga0066903_1045846401	3300005764	Tropical Forest Soil	EGRAKEVLAKELKISDPSILDITYRDFKAQSPANLEISRPGAENILALFPGGSAKIEDYVDTGLLEALRSDGYFAAMAQKYKR*
Ga0066903_1070093891	3300005764	Tropical Forest Soil	QSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAAFKAEGYFAAMQQKYSR*
Ga0075365_103501382	3300006038	Populus Endosphere	DPKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR*
Ga0075365_108652831	3300006038	Populus Endosphere	DITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLDKLRSDGHFTAMAQKYKR*
Ga0097621_1000518701	3300006237	Miscanthus Rhizosphere	TYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR*
Ga0074049_132037411	3300006580	Soil	NDFKAQSPGNIEISRPGAENILAQFPGGSQKVEDYVDGSLLEALRADGYFTAMAQKYTR*
Ga0075428_1008749382	3300006844	Populus Rhizosphere	DITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGNGYFAAMAQKYKR*
Ga0075421_1019880232	3300006845	Populus Rhizosphere	KISDPKILDITYNDFKAQSPANIEISLPGAENILAQFPGGSQKVEDYVDAGLLEALRAEGYFTAMQQKYRR*
Ga0075431_1005585531	3300006847	Populus Rhizosphere	ILDITYRDFKAQSPANLEISRPGAENMLAQFPGGSAKVEDYVDTGLLEGLRSDGYFAAMAQKYRR*
Ga0075433_114754202	3300006852	Populus Rhizosphere	QSPSNIEISRPGAENILAQFQGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0075429_1012976512	3300006880	Populus Rhizosphere	LTDPKILDITYNDFKAQSPSNIEISRPGAENILAQFQGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0068865_1018401112	3300006881	Miscanthus Rhizosphere	PKILDITYNDFKAQSPSNLEISRPGAENILAQFSGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR*
Ga0075426_109976702	3300006903	Populus Rhizosphere	LDITYNDFKAQSPANVEISQPGAENMLAQFPGGSQKVEDYVDASLLAALEREGYFTAMQQKYRR*
Ga0074063_142741581	3300006953	Soil	AKEVLAKELKITDPKILDITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDGSLLEALRADGYFTAMAQKYTR*
Ga0099830_113580751	3300009088	Vadose Zone Soil	DVLAAELKITDSKILDITYNDFKALTPPDTEPSRQGAENILAQFPDGSRKVEDYMDASLLDALRSEGYFASMRQKYRRH*
Ga0114129_119282971	3300009147	Populus Rhizosphere	KALTPPNTEPSRPGAENILAQFPGGSQKVEDYVDMSLLDALRTEGYFTAMQQKYKR*
Ga0075423_109054762	3300009162	Populus Rhizosphere	YNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR
Ga0126374_111342232	3300009792	Tropical Forest Soil	AQSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYPR*
Ga0126374_111748342	3300009792	Tropical Forest Soil	LALSDATRAKDVLAKELKITDPKILDITYNDFKAQSPANIEISQPGAANILAQFPGGSQKVEDYVDASLLAALEREGYFTAMQQKYRR*
Ga0126374_111864242	3300009792	Tropical Forest Soil	QSPANIEISQPGVGNILAQFPGGSQKVDDYVDASLLAALASEGYFTAMQQKYRR*
Ga0126380_116240942	3300010043	Tropical Forest Soil	KITDPKILDIAYNDFKAQSPSNIEISRRGAENILAQFPGGSLKVEDYVDTSLIDALRAESYFAAMQQKYRR*
Ga0126384_108202891	3300010046	Tropical Forest Soil	YNDFKAQSPANIEISQPGAANILAQFPGGSQKVDDYVDASQLAALASEGYFTAMQQRYRR
Ga0126384_108702981	3300010046	Tropical Forest Soil	PKILDITYNDFKAQSPINIEISRPGAENILAQFPDAGQKFEDYIDMSLLDALRAQGYFAAMTRKYQR*
Ga0126376_127370311	3300010359	Tropical Forest Soil	DFKAQSPVNIEISRPGAENILAQFPGGSQKVEDYVDTSLIDALRSDGYFAAMAKKYQR*
Ga0126376_127721561	3300010359	Tropical Forest Soil	DPKILDITYNDFKAQSPANIEISQPGAANILAQFPGGSQKVEDYVDASLLAALEREGYFTAMQQKYRR*
Ga0126377_129747411	3300010362	Tropical Forest Soil	SPVNIEISQPGTANILAQFPGGSQKKEDYIDTSLIDALRSDGYFAAMAKKYQR*
Ga0126379_137665351	3300010366	Tropical Forest Soil	IADPKVLDITYNDFKAQSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYLTAMQQKYSR*
Ga0126381_1017687672	3300010376	Tropical Forest Soil	TDPKILDITYNDFKVQSPVNIEISRPGAENILAQFPGGSQKVEDYVDTSLIDALRSDGYFAAMAQKYQR*
Ga0126381_1028609132	3300010376	Tropical Forest Soil	AKELKIADPKILDITYNDFKAQSPANIEISRPGAENILAQFPGGSRKVEDYVDVSLLAALESEGYFTAMQQKYRR*
Ga0126383_104361411	3300010398	Tropical Forest Soil	YSDFKAQSPTNIEISPPGAENILAQFPGGSQKVEDYVETSLLAALQAEGYFTAMQQKYQR
Ga0126383_128318621	3300010398	Tropical Forest Soil	ITYSDFKAQSPTNIEISPPGAENILAQFPGGSQKVEDYVDTSLIDALRSDGFFAAMAQKYKR*
Ga0124850_10537701	3300010863	Tropical Forest Soil	KISDPKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDTTLIDALRAEGYFAAMQQKYRR*
Ga0105246_110314682	3300011119	Miscanthus Rhizosphere	KELKITDPKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLIEKLRSDGHFTATAQKYKR*
Ga0105246_111282611	3300011119	Miscanthus Rhizosphere	KELKITDPKILDVTYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDGGLLEKLRADGHFTAMARKYKR*
Ga0105246_120551011	3300011119	Miscanthus Rhizosphere	KDVLAAELKISDSKILDITYNDFKALTPPDTEPSRQGAENILAQFPDGSRKVEDYVDASLLDALRSEGYFASMRQKYRRQ*
Ga0137389_100071518	3300012096	Vadose Zone Soil	SPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR*
Ga0157330_10271881	3300012514	Soil	KAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR*
Ga0164300_101717121	3300012951	Soil	KAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0164301_103959151	3300012960	Soil	DITYNDFKAQSPSNIEISRPGAENILAQFQGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR*
Ga0163162_130428831	3300013306	Switchgrass Rhizosphere	DITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR*
Ga0157376_111984692	3300014969	Miscanthus Rhizosphere	PSNLEISRPGAENILAQFPGGSQKVEDYVEAGLIEKLRSDGHFTAMAQKYKR*
Ga0137403_107524402	3300015264	Vadose Zone Soil	KELKIADPKILDITYNDFKAQSPANLEVSRQGAENILAQFPGGSQKVEDYVDASLLAALEREGYFTAMQQKYRR*
Ga0182035_107410821	3300016341	Soil	QSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR
Ga0182032_116294242	3300016357	Soil	MRRRSPRSALANPPRAKEVLAKELKIADSKVLDITYDDFRAQSPANCEVSLPAAANILAQFPGGSPNVADYVDATLLDAVRADGFLAAMEQKYRR
Ga0190266_102755161	3300017965	Soil	RIFKAQSPSNIEISRLGAENILAQFPGGSQKVEDYVDASLLEALRADGYFTAMAQKYRR
Ga0184617_10119663	3300018066	Groundwater Sediment	AKELKITDPKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGIQKVEDYVDAGLLEKLRSDGYFTAMAQKYKR
Ga0184624_100691151	3300018073	Groundwater Sediment	ALADEKQAKDVLAKELKISDPKILHITYNDFKALTPPNTEPSRQGAENILAQFPGGSQKAEDYVDTSLLDALRTEGYFTAMQQKYRR
Ga0066655_113245692	3300018431	Grasslands Soil	SPANIEISQLGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR
Ga0190270_104376251	3300018469	Soil	YNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR
Ga0190270_116642512	3300018469	Soil	YNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLIEKLRSDGHFTATAQKYKR
Ga0190274_108585582	3300018476	Soil	KILDITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLIEKLRSDGHFTATAQKYKR
Ga0190267_116516922	3300019767	Soil	LKITDPKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLIEKLRSDGHFTATAQKYKR
Ga0179596_101694842	3300021086	Vadose Zone Soil	KAVLAKELKIADPKILDIAYRDFKAQSPINLEISHPGAENILAQFPGGSQKVEDYVDTSLIDALRTDGTFATTAKKYGR
Ga0126371_116366231	3300021560	Tropical Forest Soil	AQSPANIEISQPGVANILAQFPGGSQKVEDYVDASLLAALASEGYFTAMQQKYQR
Ga0222622_109182161	3300022756	Groundwater Sediment	TYNDFKAQSPSNLEISRPGAENILAQFPGGIQKVEDYVDAGLLEKLRVDGHFTAMALKYK
Ga0207673_10602811	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	AKEVLAKELKITDPKILDVTYNDFKAQSPSNLEISRPGAENILAQFPGGSQKVEDYVDAGLLEKLRSDGHFTAMAQKYKR
Ga0207681_115168372	3300025923	Switchgrass Rhizosphere	ILDITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGEGYFAAMAQKYKR
Ga0209690_11018551	3300026524	Soil	KAQSPANIEISQPGAENILAQFPGGSQMLEDYVDASLLAALKAEGYFTAMQQKYRR
Ga0209684_10495521	3300027527	Tropical Forest Soil	KEVLAKELKITDAKILDITYNDFKAQSPANIEISQPGVGNILAQFPGGSQKVEDYVDASLLAALASEGYFTAMQQKYGR
Ga0307315_102365771	3300028721	Soil	LKITDPKILDITYNDFKAQSPSNLEISRPGAENILAQFPGGIQKVEDYVDAGLLEKLRVDGHFTAMAQKYKR
Ga0307306_100539852	3300028782	Soil	NDFKAQSPGNIEISRPGAENILAQFPGGSQKVEDYVDASLLETLRADGYFTAMAQKYRR
Ga0307289_100947492	3300028875	Soil	QSPSNLEISRPGAENILAQFPGGIQKVEDYVDAGLLEKLRVDGHFTAMAQKYKR
Ga0307286_100413691	3300028876	Soil	AKELKITDPKILDITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRADGYFTAMAQKYRR
Ga0307278_104781831	3300028878	Soil	VLAAELKISDPKILDITYNDFKALTPPDTEPTRQGAENILAQLPDGSRKVEDYMDASLLDALRSEGYFAAMQQKYRRH
Ga0318534_108034211	3300031544	Soil	LSDAARAKDVLAKELKITDPKILDITYNDFKAQSPTNIEISEPGAANILAQFPGGSQRVEDYVDASLLAALEREGYFTAMQQKYRR
Ga0318571_101808901	3300031549	Soil	QSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYSR
Ga0318528_104360472	3300031561	Soil	FKAQSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR
Ga0310886_102689381	3300031562	Soil	LDITYNDFKAQSPNNVEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR
Ga0310915_109222912	3300031573	Soil	AQSPANIEISQPGAQNILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR
Ga0306917_101049583	3300031719	Soil	KAQSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR
Ga0306917_101224683	3300031719	Soil	KAQSPANIEISQPGAENILAQFPGGSQRLEDYVDTSLLAALKAEGYFTAMQQKYRR
Ga0306918_101044331	3300031744	Soil	SPANIEVSQPGAENILAQFSGGSQRFEDYVDASPLAALKAEGYFTAMQQKYFR
Ga0306918_105134001	3300031744	Soil	AQSPANIEISQPGAENILAQFPGGSQRLEDYVDASLLAALKAEGYFTAMQQKYRR
Ga0318502_100193201	3300031747	Soil	TYNDFKAQSPANIEVSQPGAENILAQFSGGSQRFEDYVDASPLAALKAEGYFTAMQQKYF
Ga0318526_103332011	3300031769	Soil	ILDITYSDFKAQSPSNIEISLPGAENILAQFPGGSQKVDDYVDTSLIDTLGSEGFLAAMQQKYRR
Ga0318547_101864392	3300031781	Soil	KDVLAKELKITDPKILDITYNDFKAQSPTNIEISEPGAANILAQFPGGSQRVEDYVDASLLAALEREGYFTAMQQKYRR
Ga0318548_100095111	3300031793	Soil	VLAKELKITDPKILDITYNDFKAQSPTNIEISEPGAANILAQFPGGSQRVEDYVDASLLAALEREGYFTAMQQKYRR
Ga0318576_101092602	3300031796	Soil	LAKELKITDPKILDITYNDFKAQSPTNIEISEPGAANILAQFPGGSQRVEDYVDASLLAALEREGYFTAMQQKYRR
Ga0318567_101642281	3300031821	Soil	FKAQSPANIEVSQPGAENILAQFSGGSQRFEDYVDASPLAALKAEGYFTAMQQKYFR
Ga0318495_105044352	3300031860	Soil	DFKAQSPSNIEISLPGAENILAQFPGGSQKVDDYVDTSLIDTLGSEGFLAAMQQKYRR
Ga0318522_104157142	3300031894	Soil	ILDITYNDFKAQSPTNIEISEPGAANILAQFPGGSQRVEDYVDASLLAALEREGYFTAMQQKYRR
Ga0310902_106574462	3300032012	Soil	AKEVLARELKLTDPKILDITYNDFKAQSPSNIEISRPGAENILAQFPGGSQKVEDYVDASLLEALRGDGYFAAMAQKYKR
Ga0318507_100584353	3300032025	Soil	GDPKILDITYSDFKAQSPSNIEISLPGAENILAQFPGGSQKVDDYVDTSLIDTLGSEGFLAAMQQKYRR
Ga0318570_102150701	3300032054	Soil	LKVGDPKILDITYSDFKAQSPSNIEISLPGAENILAQFPGGSQKVDDYVDTSLIDTLGSEGFLAAMQQKYRR
Ga0318510_102642282	3300032064	Soil	VLAKELKVGDPKILDITYSDFKAQSPSNIEISLPGAENILAQFPGGSQKVDDYVDTSLIDTLGSEGFLAAMQQKYRR
Ga0318514_104525822	3300032066	Soil	MGVQQSPANIEISQPGAENILAQFPGGSQRFEDYVDASLLAALKAEGYFTAMQQKYSR
Ga0318514_105673002	3300032066	Soil	ELKITDTRILEITYADFKAQSPANLEISVPGAKNILAQLSGRSGQVTDYVDTSLLEALGNEGFFAAMARKYRF
Ga0307470_117651132	3300032174	Hardwood Forest Soil	RAKEVLAKELKITDPKILDVTYADFKAQSPTNIEVSRQGAENILAQFPGGSQKVEDYVDVSLLDALRSEGFFAAMQQKYKREQ
Ga0306920_1027548562	3300032261	Soil	PADIEISQPGVGNILARFPGGSQKVDDYVDASLLAALASEGYFTAMQQKYRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097582

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences