Metagenome Family F097538

Overview

Basic Information

• Family ID: F097538
• Family Type: Metagenome
• Number of Sequences: 104
• Average Sequence Length: 43 residues
• Representative Sequence: EQGLTVATNALRLEYELTRSLTLRAEAGTISGVGIYFRRSFD
• Number of Associated Samples: 92
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (12.500 % of family members)
• Environment Ontology (ENVO): Unclassified (38.462 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (48.077 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 57.14%
  β-sheet: 0.00%
  Coil/Unstructured: 42.86%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00326	Peptidase_S9	15.38
PF01206	TusA	15.38
PF04357	TamB	10.58
PF02698	DUF218	9.62
PF02780	Transketolase_C	5.77
PF03466	LysR_substrate	4.81
PF13442	Cytochrome_CBB3	3.85
PF13686	DrsE_2	2.88
PF00590	TP_methylase	2.88
PF13365	Trypsin_2	2.88
PF02737	3HCDH_N	1.92
PF01464	SLT	1.92
PF13418	Kelch_4	1.92
PF00294	PfkB	0.96
PF02627	CMD	0.96
PF07452	CHRD	0.96
PF01436	NHL	0.96
PF00108	Thiolase_N	0.96
PF01694	Rhomboid	0.96
PF01565	FAD_binding_4	0.96
PF14023	DUF4239	0.96
PF03006	HlyIII	0.96
PF13628	DUF4142	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0425	Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis)	Translation, ribosomal structure and biogenesis [J]	15.38
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	10.58
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	9.62
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	9.62
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.92
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	1.92
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.92
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.92
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	1.92
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	1.92
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	1.92
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.96
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.96
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.96

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.73%
Host-Associated	Host-Associated	43.27%

Class

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	43.27%
Terrestrial	Environmental → Terrestrial	40.38%
Aquatic	Environmental → Aquatic	16.35%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	25.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.23%
Peat	Environmental → Terrestrial → Peat	14.42%
Freshwater	Environmental → Aquatic → Freshwater	13.46%
Sediment	Environmental → Aquatic → Sediment	1.92%
Marine	Environmental → Aquatic → Marine	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.62%
Lake	Environmental → Aquatic → Freshwater → Lake	8.65%
Loam	Environmental → Terrestrial → Soil → Loam	5.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.96%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.96%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat

Habitat	Taxonomy	Distribution
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	12.50%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.96%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.96%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.96%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated
3300014316	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1	Environmental
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental
3300028740	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3	Environmental
3300028869	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4	Environmental
3300029987	I_Fen_E3 coassembly	Environmental
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental
3300030294	II_Fen_E3 coassembly	Environmental
3300030339	III_Bog_N1 coassembly	Environmental
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031521	III_Fen_E2 coassembly	Environmental
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental
3300031918	III_Fen_N3 coassembly	Environmental
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1067514042	3300001213	Wetland	ATNALRLEYHLSRTLTLRAEAGTVSGVGIFYRRSFE*
JGI24744J21845_100971871	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	TNALRIEYALSNTLTLRAEAGTISGLGIFYRRSFE*
Ga0063356_1054960171	3300004463	Arabidopsis Thaliana Rhizosphere	RLTLVYEQGLTVATNALRIEYALSRTLTLRAEAGVVSSVGLFFRRSFD*
Ga0062595_1018801182	3300004479	Soil	KLSLVYEQGLTVASNALRIEYALTRTITLRAEAGTISSLGLYYRRSYD*
Ga0070658_101789744	3300005327	Corn Rhizosphere	TLGYEQGLWLASGALRLEYALTRTLTLRAEAGTVSALGLFYRRSFE*
Ga0070689_1003486981	3300005340	Switchgrass Rhizosphere	GLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD*
Ga0070687_1013319131	3300005343	Switchgrass Rhizosphere	GLTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD*
Ga0070673_1010392123	3300005364	Switchgrass Rhizosphere	RLTLVYEQGLTLATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD*
Ga0070672_1000311119	3300005543	Miscanthus Rhizosphere	RLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD*
Ga0070672_1000491463	3300005543	Miscanthus Rhizosphere	ISDRLNLVYEQGLTAATNALRVEYALTRTLTLRAEAGVVSSLGMYFRRTFD*
Ga0068856_1011468332	3300005614	Corn Rhizosphere	GYEQGLSVAANAVRLEYALTNTLTLRAEAGTVSGIGVYYRRTYN*
Ga0068859_1000375881	3300005617	Switchgrass Rhizosphere	TIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD*
Ga0068864_1012698801	3300005618	Switchgrass Rhizosphere	TLVYEQGLTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD*
Ga0068851_107832961	3300005834	Corn Rhizosphere	DRLNLVYEQGLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD*
Ga0068863_1013398222	3300005841	Switchgrass Rhizosphere	SLATNALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD*
Ga0068863_1027239462	3300005841	Switchgrass Rhizosphere	ATNALRIEYALSSTLTVRAEAGTVSGVGLVYRRAFD*
Ga0066652_1008039741	3300006046	Soil	LSEHLTVAWEQGLTVATNALRIEYSLTQSLSVRAEAGTVSGLGLFYRKSF*
Ga0075028_1004421381	3300006050	Watersheds	LTVATNALRIEYALSSTLSVRAEAGTVSGLGLVYRRNFE*
Ga0097621_1017553432	3300006237	Miscanthus Rhizosphere	LGYEQGLSIAANALRLEYTLTNTLTVRAEAGAISGVGIYYRRSYD*
Ga0066653_106414131	3300006791	Soil	QGLSIASNALRLEYALTKTLTLRAEAGTVSGVGVYYRRTYN*
Ga0075425_1013872241	3300006854	Populus Rhizosphere	LMLVYEQGLTVAKNALRLEYALTRTVTLRAEAGVISSFGIYYRKVFD*
Ga0066710_1034301871	3300009012	Grasslands Soil	LSEHLTVAWEQGLTVATNALRIEYSLTQSLSVRAEAGTVSGLGLFYRKSF
Ga0105243_101170187	3300009148	Miscanthus Rhizosphere	LTDRLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD*
Ga0075423_112463981	3300009162	Populus Rhizosphere	GLSIAANALRLEYALTNTLTVRAEAGAVSGIGLYYRRTYN*
Ga0105100_102349352	3300009166	Freshwater Sediment	LPEKLYLFAEQGRTVATNGLKLESALTRNSTLRAEAGVVSGFGIYYRRSFE*
Ga0115028_120219982	3300009179	Wetland	NALRLEYSLTRTLTLRAEAGVISGFGIYYRRTFE*
Ga0105237_110915862	3300009545	Corn Rhizosphere	SLVYEQGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD*
Ga0105249_114977703	3300009553	Switchgrass Rhizosphere	INDKLTLVYEQGLTVAKNALRLEYSLTRTLTLRAEAGVVSSFGIYYRRVFD*
Ga0134124_122135921	3300010397	Terrestrial Soil	TVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD*
Ga0126383_118193883	3300010398	Tropical Forest Soil	GLTVATNALRVEYALSNTLSVRAEAGTVSGVGLYYRRNFE*
Ga0136623_105160993	3300012045	Polar Desert Sand	LSLIYEQGLSLASNALRIEYALTRTLTLRAEAGTVSGIGIFYRRTYD*
Ga0137376_104325123	3300012208	Vadose Zone Soil	AANALRLEYALTNTLTLRAEAGAVSGIGVYYRRAFD*
Ga0157374_115033481	3300013296	Miscanthus Rhizosphere	LTVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD*
Ga0157378_113988241	3300013297	Miscanthus Rhizosphere	LVYEQGLTIATNALRLEYELTRSLTLRAEAGTVGGLGIYFRRTFD*
Ga0075339_11161532	3300014316	Natural And Restored Wetlands	VATNALRLEYELTRSLRLRAEAGTVSGLGIYFRRSFD*
Ga0182008_109892342	3300014497	Rhizosphere	ASGALRLEYALTRTLTLRAEAGTVSALGLIYRRSFE*
Ga0182019_107636882	3300014498	Fen	TVATNALRIEYTLSRTLTLRAEAGVVSSVGLYFRRTYD*
Ga0157379_116870661	3300014968	Switchgrass Rhizosphere	NALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD*
Ga0157376_119321152	3300014969	Miscanthus Rhizosphere	YEQGLTIATNALRIEYALSSTLTVRAEAGTVSGVGLVYRRSFD*
Ga0132258_104222494	3300015371	Arabidopsis Rhizosphere	LTVAYEQGLTVATNALRIEYALSSTLSVRAEAGTVSGLGLVYRRNFE*
Ga0132255_1049172841	3300015374	Arabidopsis Rhizosphere	LSENLTVAWEQGLTVATNALRIEYSLTTSLSVRAEAGTVSGLGLFYRKSFE*
Ga0184605_101449981	3300018027	Groundwater Sediment	QGLSIAANALRLEYALTNTLTLRAEAGMVSGVGVYYRRAFD
Ga0193735_11655741	3300020006	Soil	KLMLVYEQGLTVATNALRLEYSLSRTLTLRAEGGAISGFGIYYRRVFD
Ga0207697_104205531	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	ATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD
Ga0209483_10290301	3300025862	Arctic Peat Soil	LSNRLTLVYEQGLTVATNALRLEYALTRTLTLRVEAGTVSGLGIFFRRSYD
Ga0209483_11219202	3300025862	Arctic Peat Soil	SRLTLVYEQGLTVATNALRLEYALTRTLTLRVEAGTVSGLGIFFRRSYD
Ga0207688_107352661	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	GLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD
Ga0207693_112483201	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VYEQGLTIATNALRIEYTLTRTITLRAEAGTVASVGIYYRKTFD
Ga0207662_111160713	3300025918	Switchgrass Rhizosphere	LTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD
Ga0207662_113182391	3300025918	Switchgrass Rhizosphere	YEQGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD
Ga0207681_105915711	3300025923	Switchgrass Rhizosphere	YQQGLSIATNALRIEYALSNTLTLRAEAGTISGLGIFYRRSFE
Ga0207650_105617562	3300025925	Switchgrass Rhizosphere	GLSFASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE
Ga0207686_104029752	3300025934	Miscanthus Rhizosphere	TNTLRIEYALTRTVTLRAEAGTVGSVGVFYRRSFD
Ga0207670_103084121	3300025936	Switchgrass Rhizosphere	GLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD
Ga0207704_118503871	3300025938	Miscanthus Rhizosphere	LVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD
Ga0207711_120908282	3300025941	Switchgrass Rhizosphere	RLTLVYEQGLTVATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD
Ga0207689_103730443	3300025942	Miscanthus Rhizosphere	SLVYEQGLTIATNALRLEYELTRSLTLRAEAGTVGGLGIYFRRTFD
Ga0207679_100148667	3300025945	Corn Rhizosphere	SGALRLEYALTRTLTLRAEAGTVSALGLFYRRSFE
Ga0207651_112918222	3300025960	Switchgrass Rhizosphere	QGLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD
Ga0207640_108590451	3300025981	Corn Rhizosphere	LVYEQGLTVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD
Ga0207658_106891431	3300025986	Switchgrass Rhizosphere	EQGLSLAQNALRIEYALSRTLTLRAEAGAVASFGLYYRRSYD
Ga0207658_106977271	3300025986	Switchgrass Rhizosphere	FASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE
Ga0207703_101774071	3300026035	Switchgrass Rhizosphere	KRISDRLTLVYEQGLSLATNALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD
Ga0207641_113805653	3300026088	Switchgrass Rhizosphere	ERLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD
Ga0207648_109259802	3300026089	Miscanthus Rhizosphere	EQGLSFASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE
Ga0207648_113749773	3300026089	Miscanthus Rhizosphere	GLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD
Ga0207674_123036471	3300026116	Corn Rhizosphere	GYEQGLSLAANALRLEYALTSTLTLRAEAGTVSGVGVYYRRTYN
Ga0209797_101512481	3300027831	Wetland Sediment	DRLSLVYEQGLSLANNTLRLEYELTRSLRLRAEAGTISGVGLYFGRSFD
Ga0302166_100545331	3300028652	Fen	TVANNALRIEYALTRSLTLRAEAGIISSLGLYFRRSYD
Ga0302294_102041681	3300028740	Fen	EQGLTVANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD
Ga0302263_100230764	3300028869	Fen	TLVYEQGLTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE
Ga0311334_117017111	3300029987	Fen	LSESLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0302172_101181832	3300030003	Fen	RMTLVYEQGLTVATNALRIEYTLSRTLTLRAEAGVVSSLGLFFRRTYD
Ga0311349_100189031	3300030294	Fen	TVANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD
Ga0311349_113391172	3300030294	Fen	SETLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0311349_116129402	3300030294	Fen	TDRLTLVYEQGLTVATNALRLEYSLTRAITLRAEAGTISSVGVYYRRNFD
Ga0311360_107175351	3300030339	Bog	ANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD
Ga0311360_108333841	3300030339	Bog	QGLTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE
Ga0170824_1227002481	3300031231	Forest Soil	LVYAQGLTVATNALRIEYALTRTLTLRAEAGVVGSFGIYYRRSFD
Ga0311364_124159551	3300031521	Fen	WEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0302321_1000315315	3300031726	Fen	LTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE
Ga0302321_1014462303	3300031726	Fen	SESLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0302321_1024839521	3300031726	Fen	LTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0315899_117264082	3300031784	Freshwater	EQGLTVATNALRLEYELTRSLTLRAEAGTISGVGIYFRRSFD
Ga0315297_108350612	3300031873	Sediment	EQGLTVATNALRLEYSLSRTLTLRAEAGAISGFGIYYRRTFE
Ga0310900_103419451	3300031908	Soil	TNALRLEYALTRTWTLRAEAGTVSGFGIYYRRAFD
Ga0311367_111003793	3300031918	Fen	TVANNALRIEYALTKSLTLRAEAGIISSLGLYFRRSYD
Ga0310901_102230072	3300031940	Soil	RLNLVYEQGLTAATNALRVEYALTRTLTLRAEAGVVSSLGMYFRRTFD
Ga0307409_1024102221	3300031995	Rhizosphere	DRLSLVYEQGLTAATNALRIEYALTRTLTLRAEAGVISSVGLYFRRTFD
Ga0308176_102259263	3300031996	Soil	TIGYEQGLALASSAVRIEYALTRTLTLRAEAGAASSLSLVYRRLFQ
Ga0307416_1024328602	3300032002	Rhizosphere	ATNALRIEYTLTRTLTLRAEAGVVSSVGLYFRRTFD
Ga0318524_104098932	3300032067	Soil	QGLTVAKNALRLDYALTRTLTLRAEGGAISSVGIFYRRVFD
Ga0315277_108971661	3300032118	Sediment	DNLSLVYEQGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTLE
Ga0315281_111540093	3300032163	Sediment	ATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTLE
Ga0315283_106823101	3300032164	Sediment	ATNALRLEYDLTRSLTRRAEAGTVGGVGLYFRRSFD
Ga0307471_1011892843	3300032180	Hardwood Forest Soil	VYEQGLTVANNALRIEYALTRTLTLRAEAGIISSLGVYFRRSYD
Ga0315270_107300881	3300032275	Sediment	DRLTIVYEQGLTIANNALRLEYTLSRTLTLRAETGVVSGVGVYYRHAFE
Ga0315286_108793152	3300032342	Sediment	QGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTFE
Ga0315287_113095031	3300032397	Sediment	TDRLSLVYEQGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTFE
Ga0315273_112825763	3300032516	Sediment	LANNTLRLEYELTRSLRLRAEAGAISGIGIFFRRSFD
Ga0315273_115101692	3300032516	Sediment	DRLSLVYEQGLTVATNALRLEYDLTRSLMLRAEAGTVGGIGLYFRRSFD
Ga0316619_104255302	3300033414	Soil	RLTERLSLVYEQGLTVATNGLRIEYALSRTMTLRAEAGTVSGVGIYYRRTMR
Ga0247829_101356962	3300033550	Soil	RLTLVYEQGLTVATNALRIEYALSRTLTLRAEAGVVSSVGLFFRRSFD
Ga0364927_0086580_738_857	3300034148	Sediment	LSVANNALRIEYALTRTLTVRAEAGVVSSLGLYFRRTYD