Metagenome / Metatranscriptome Family F097534

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097534
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	47 residues
Representative Sequence	TYIVDVQPDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR
Number of Associated Samples	94
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	96.15 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.192 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (29.808 % of family members)
Environment Ontology (ENVO)	Unclassified (48.077 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.57% β-sheet: 22.97% Coil/Unstructured: 59.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13231	PMT_2	17.31
PF04055	Radical_SAM	10.58
PF00534	Glycos_transf_1	8.65
PF10131	PTPS_related	4.81
PF01370	Epimerase	4.81
PF14534	DUF4440	3.85
PF03544	TonB_C	1.92
PF01066	CDP-OH_P_transf	1.92
PF01427	Peptidase_M15	1.92
PF07883	Cupin_2	0.96
PF13692	Glyco_trans_1_4	0.96
PF08734	GYD	0.96
PF13518	HTH_28	0.96
PF12867	DinB_2	0.96
PF00005	ABC_tran	0.96
PF13328	HD_4	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	1.92
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.92
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	1.92
COG2173	D-alanyl-D-alanine dipeptidase	Cell wall/membrane/envelope biogenesis [M]	1.92
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	1.92
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.19 %
Unclassified	root	N/A	4.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.19 %
Unclassified	root	N/A	4.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.19 %
Unclassified	root	N/A	4.81 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	79.81 %
Unclassified	root	N/A	4.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	79.81 %
Unclassified	root	N/A	4.81 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	57.69 %
Unclassified	root	N/A	4.81 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	57.69 %
Unclassified	root	N/A	4.81 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	57.69 %
Unclassified	root	N/A	4.81 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01EF0MR	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	537	Open in IMG/M
3300000559\|F14TC_100422006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300000955\|JGI1027J12803_100659658	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300000956\|JGI10216J12902_115252527	Not Available	871	Open in IMG/M
3300002128\|JGI24036J26619_10036447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	943	Open in IMG/M
3300005178\|Ga0066688_10094072	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1820	Open in IMG/M
3300005179\|Ga0066684_10553562	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300005187\|Ga0066675_10141214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1643	Open in IMG/M
3300005335\|Ga0070666_10613028	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	795	Open in IMG/M
3300005436\|Ga0070713_101863581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300005466\|Ga0070685_10389202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	963	Open in IMG/M
3300005548\|Ga0070665_101829119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	614	Open in IMG/M
3300005575\|Ga0066702_10492932	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	747	Open in IMG/M
3300005586\|Ga0066691_10931796	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300006237\|Ga0097621_102103739	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300009098\|Ga0105245_10081262	All Organisms → cellular organisms → Bacteria	2962	Open in IMG/M
3300009101\|Ga0105247_11481701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300009168\|Ga0105104_10510540	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300010046\|Ga0126384_10546685	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1006	Open in IMG/M
3300010320\|Ga0134109_10057154	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1301	Open in IMG/M
3300010361\|Ga0126378_10641661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300010376\|Ga0126381_103801264	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300010396\|Ga0134126_11043983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300010396\|Ga0134126_12460308	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300011269\|Ga0137392_11369785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300011270\|Ga0137391_11073711	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300011271\|Ga0137393_11139552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	663	Open in IMG/M
3300011271\|Ga0137393_11237462	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300012189\|Ga0137388_11603014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300012199\|Ga0137383_10571872	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	827	Open in IMG/M
3300012205\|Ga0137362_10312177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1361	Open in IMG/M
3300012206\|Ga0137380_10675022	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	899	Open in IMG/M
3300012208\|Ga0137376_10656266	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012209\|Ga0137379_11638555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300012210\|Ga0137378_11292435	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300012349\|Ga0137387_10687257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	741	Open in IMG/M
3300012350\|Ga0137372_10847363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300012354\|Ga0137366_10000305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	30422	Open in IMG/M
3300012355\|Ga0137369_10300135	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300012357\|Ga0137384_10328655	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1269	Open in IMG/M
3300012357\|Ga0137384_10405019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1126	Open in IMG/M
3300012362\|Ga0137361_10108026	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2432	Open in IMG/M
3300012582\|Ga0137358_10969629	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300012914\|Ga0157297_10040943	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1166	Open in IMG/M
3300012915\|Ga0157302_10035589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1339	Open in IMG/M
3300012922\|Ga0137394_11377797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300012923\|Ga0137359_10951895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	738	Open in IMG/M
3300012925\|Ga0137419_10841074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	753	Open in IMG/M
3300012925\|Ga0137419_11955470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300012929\|Ga0137404_11307302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	668	Open in IMG/M
3300012955\|Ga0164298_10589358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300012971\|Ga0126369_11597281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	742	Open in IMG/M
3300012975\|Ga0134110_10045200	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1732	Open in IMG/M
3300012985\|Ga0164308_10706639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	870	Open in IMG/M
3300012986\|Ga0164304_11695431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300013100\|Ga0157373_10757337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300013102\|Ga0157371_10255405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1263	Open in IMG/M
3300013296\|Ga0157374_10847749	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	931	Open in IMG/M
3300014745\|Ga0157377_10149009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1445	Open in IMG/M
3300015051\|Ga0137414_1000659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1591	Open in IMG/M
3300015051\|Ga0137414_1000660	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	934	Open in IMG/M
3300015051\|Ga0137414_1147055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1594	Open in IMG/M
3300015241\|Ga0137418_10683701	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300015356\|Ga0134073_10156581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	725	Open in IMG/M
3300015356\|Ga0134073_10358650	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	538	Open in IMG/M
3300015359\|Ga0134085_10152369	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300015371\|Ga0132258_11148275	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300015374\|Ga0132255_103365508	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	681	Open in IMG/M
3300016357\|Ga0182032_10497011	Not Available	1002	Open in IMG/M
3300016445\|Ga0182038_11376318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	632	Open in IMG/M
3300018054\|Ga0184621_10052477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1365	Open in IMG/M
3300018061\|Ga0184619_10358237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
3300018468\|Ga0066662_12764938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300018482\|Ga0066669_10192443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1552	Open in IMG/M
3300018482\|Ga0066669_11441082	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300019867\|Ga0193704_1085351	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	572	Open in IMG/M
3300019886\|Ga0193727_1147165	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300020006\|Ga0193735_1111176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	754	Open in IMG/M
3300021560\|Ga0126371_13677694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300021953\|Ga0213880_10011901	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300024288\|Ga0179589_10638945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300025927\|Ga0207687_11265628	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300025940\|Ga0207691_11184412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300026078\|Ga0207702_10302882	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1517	Open in IMG/M
3300026142\|Ga0207698_11166968	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	784	Open in IMG/M
3300026295\|Ga0209234_1270005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300026301\|Ga0209238_1109888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	924	Open in IMG/M
3300026310\|Ga0209239_1117770	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1105	Open in IMG/M
3300026330\|Ga0209473_1255435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	601	Open in IMG/M
3300026498\|Ga0257156_1080639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	675	Open in IMG/M
3300026547\|Ga0209156_10118283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1302	Open in IMG/M
3300026552\|Ga0209577_10063644	All Organisms → cellular organisms → Bacteria	3076	Open in IMG/M
3300026557\|Ga0179587_10344622	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300026557\|Ga0179587_10673361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	681	Open in IMG/M
3300027050\|Ga0209325_1006955	Not Available	1218	Open in IMG/M
3300030855\|Ga0075374_11068564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300031122\|Ga0170822_14358759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	793	Open in IMG/M
3300031719\|Ga0306917_10503330	Not Available	951	Open in IMG/M
3300031946\|Ga0310910_11061245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	632	Open in IMG/M
3300031947\|Ga0310909_10829930	Not Available	762	Open in IMG/M
3300031996\|Ga0308176_11184835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	810	Open in IMG/M
3300032174\|Ga0307470_10385640	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300032205\|Ga0307472_100212242	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300032205\|Ga0307472_100841089	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.58%
Host-Associated	Host-Associated	14.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.69%
Plants	Host-Associated → Plants	14.42%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Sediment	Environmental → Aquatic → Sediment	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.73%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	29.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_02917580	2170459005	Grass Soil	RLAPTYIVDVHPDPKSAQYPVKNFPILAKLLAERYQPVAQTAE
F14TC_1004220062	3300000559	Soil	KHPPTYIVDVQADPNMAQYPVKNFPILANLLKERYQPVARTAEGMIYRMR*
JGI1027J12803_1006596583	3300000955	Soil	FARHPPTYIVDVQSDPKSAQYPVKNFPILAKLLAGRYQPVAHTTEGVIYQMR*
JGI10216J12902_1152525272	3300000956	Soil	LERDFARHPPTYIVDVHADPKTAEYPVGDFPILAKLLKERYQLVARTSEGVIYRMH*
JGI24036J26619_100364471	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	HPPTYIVDVHPDPRSAYYPVKDFPILAKLLTDRYQPVARTGEGVIYRMR*
Ga0066688_100940721	3300005178	Soil	NYIVDVRPDPKSAYYPVKDFPILAKFLAERYQPEVQVAEGVIYRMR*
Ga0066684_105535622	3300005179	Soil	ILPGAWSNLQRDFAMHPPAYIVDVHPGPRTAAYPVKNFPILAKFLTERYQPVARTGESVIYGMR*
Ga0066675_101412141	3300005187	Soil	YIVDVQSDSRTLQYPVKNFPILDTLLKERYQPVARTAEGTIYRMR*
Ga0070666_106130281	3300005335	Switchgrass Rhizosphere	DFTRHPPTYIVDVHPDPRSAYYPVKDFPILAKLLTDRYQPVARTGEGVIYRMR*
Ga0070713_1018635812	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	YIVDVQPDPKSAQNPVKNFPILAKLLAERYQPMAHSAEGKQ*
Ga0070685_103892022	3300005466	Switchgrass Rhizosphere	STLEQDFTRHPPTYIVDVQPDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR*
Ga0070665_1018291192	3300005548	Switchgrass Rhizosphere	SSLEQDFTTHPPTYIVDVQPDPRSAHYPVKDFPILAKLLTERYQPVAHTAEGVIYRMR*
Ga0066702_104929322	3300005575	Soil	STLEQDFARHPPTYIVDVQPDPKTAQYPVKNFPILAKLLAEQYQPVAHTAEGVIYRMR*
Ga0066691_109317962	3300005586	Soil	HPDPKSAYYPVKNFPILAKLLADRYQPVAQTAEGVIYRMR*
Ga0097621_1021037392	3300006237	Miscanthus Rhizosphere	FTRHPPTYIVDVQPDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR*
Ga0105245_100812623	3300009098	Miscanthus Rhizosphere	QDFTRHPPTYIVDVQPDPKSAQYPVQNFPILANLLADRYQPVAKTAEGVIYRMR*
Ga0105247_114817011	3300009101	Switchgrass Rhizosphere	RTLQYPAKNFPILTKLLKERYQPVARTAEGVIYRMR*
Ga0105104_105105402	3300009168	Freshwater Sediment	WSTLERDFARHPPTYIVDVQSDPRTAQYTVKDFPILARLLKERYQPVARTAEGMIYRMR*
Ga0126384_105466852	3300010046	Tropical Forest Soil	PSNAEYPVKDFPILAKLLAEKYQPVAHTSEGVIYRLR*
Ga0134109_100571542	3300010320	Grasslands Soil	WSTLQRDFARHPPAYIVDVQPDPKSAQYPVKNFPILAEILTERYQPVAQTAEGVIYRMR*
Ga0126378_106416611	3300010361	Tropical Forest Soil	PPAYIVDVDADPTAQYPVKDFPILANLLRQQYQIVARTAEGAIYCLH*
Ga0126381_1038012642	3300010376	Tropical Forest Soil	HPPAYIVDLEADPSTAENPVKDYPILAKLLKERYQPVARTPEGVIYRAR*
Ga0134126_110439832	3300010396	Terrestrial Soil	FARHPPTYIVDVQPDPQSAQYPVKHFPILAKLLADRYQPVAKTAEGVIYRMR*
Ga0134126_124603081	3300010396	Terrestrial Soil	TLQRDFVRHPPAYIVDVHPGPNTAEYPVKNFPILAKFLRERYQPVARTAESVIYGMR*
Ga0137392_113697852	3300011269	Vadose Zone Soil	EQDFTRHPPTYIVDVQPDPKSAQYPVKNFPILAKLLAQRYQPVAHTAEGVIYRMR*
Ga0137391_110737111	3300011270	Vadose Zone Soil	RHPPTYIVDVQPDPKSAQYPVKDFPILARLLAERYQPVAHTAEGVIYRMR*
Ga0137393_111395522	3300011271	Vadose Zone Soil	LPGAWSILEQDFARHPPTYIVDVQPDPKSAQYPVKDFPILARLLAKRYQPVAHTAEGVIYRMR*
Ga0137393_112374623	3300011271	Vadose Zone Soil	ARHPPTYIVDVQADPKTAQYPVKNFPILAKLLAEWYQPVAYTAEGVIYRMR*
Ga0137388_116030141	3300012189	Vadose Zone Soil	YIVDVQADPKIAQYPVKNFPILAKLLAEWYQPVAYTAEGVIYRMR*
Ga0137383_105718721	3300012199	Vadose Zone Soil	TLEQDFARHPPNYIVDVRPDPKSAYYPVKDFPILAKFLAERYQAKVQVAEGVIYRMR*
Ga0137362_103121771	3300012205	Vadose Zone Soil	TAQDPVRNFPILAKLLKERYQPVARTAEGVIYRMR*
Ga0137380_106750222	3300012206	Vadose Zone Soil	LPGAWTNLEQDFARHPPIYIVDLQADPKTAQYPVKDFPILTKLLAEQYQPVAHTAEGMIYRMR*
Ga0137376_106562661	3300012208	Vadose Zone Soil	AQDPVKNFPILTKLLAEQYEPVAHTAEGVIYRMR*
Ga0137379_116385551	3300012209	Vadose Zone Soil	LPGAWTNLEQDFARHPPTYIVDVQADPKTAQHPVKNFPILTKPLAERYQPVAHTAEGMIYRMR*
Ga0137378_112924352	3300012210	Vadose Zone Soil	GALYPVQDFPILAKLLVERYQPVARTAEGVIYRMR*
Ga0137387_106872571	3300012349	Vadose Zone Soil	PPTYIVDVQADPKTAQHPVKNFPILAKLLAEQYQPVAYTAEGVIYRMR*
Ga0137372_108473632	3300012350	Vadose Zone Soil	KSAYYPVKNFPILAKLLADRYQPVAQTAEGVIYRMR*
Ga0137366_1000030524	3300012354	Vadose Zone Soil	YIVDVQPDPKTAHYPVKNFPILAKLLTERYQPVAHTAEGVIYRMR*
Ga0137369_103001351	3300012355	Vadose Zone Soil	FAKHSPTYIVDVQADPKMAPYPVKNFPILAKLLAEHYQPVARTAEGVIYGRR*
Ga0137384_103286551	3300012357	Vadose Zone Soil	SAQYAVKNFPILAKILTERYQPVAQTAEGVIYRMR*
Ga0137384_104050192	3300012357	Vadose Zone Soil	KTAHYPLKNFPILAKLLTERYQPVAHTAEGVIYRMR*
Ga0137361_101080261	3300012362	Vadose Zone Soil	IIDVQSDPKTAQDPVRNFPILAKLLKERYQPVARTAEGGIYRMR*
Ga0137358_109696291	3300012582	Vadose Zone Soil	TILEQDFARHPPIYIVDVHPDPKSAQNPVKNFPILAKLLAERFQPVAHTAEGVIYGMR*
Ga0157297_100409431	3300012914	Soil	LEQDFSRHPPKYIVDVHPDPRSAYYPVKHFPILAKLLTERYQPVARTAEAVIYRMR*
Ga0157302_100355892	3300012915	Soil	QPDPKSAQYPVQNFPILANLLADRYQPVAKTAEGVIYRMR*
Ga0137394_113777971	3300012922	Vadose Zone Soil	PDPKSAQNPVKNFPILAKLLAEHYQPVARTVEGMIYRMR*
Ga0137359_109518952	3300012923	Vadose Zone Soil	QSDPKTAQYPVKNFPILAKLLAEQYQPVAHTAEGVIYRMR*
Ga0137419_108410742	3300012925	Vadose Zone Soil	VHPDPKSAQNPVKNFPILAKLLADRYQPVAHTAEGVIYGMR*
Ga0137419_119554702	3300012925	Vadose Zone Soil	VHPDPKSAQNPVKNFPILAKLLADRYQPVAQTAEGVIYRMR*
Ga0137404_113073022	3300012929	Vadose Zone Soil	LPGAWTTLERDFAKHPPTYIIDVQPDPKTAQDPVRNFPILAKRLAERYQPVAHTAEGVIYRMR*
Ga0164298_105893581	3300012955	Soil	DFARHPPAYIVDVQDPSKAQYPVKDFPILAKLLAEKYQPVAHTVEGVIYRVR*
Ga0126369_115972812	3300012971	Tropical Forest Soil	LPGAWATLVQDFARHPPAYIVDVQDPSKAQYPVKDFPILAKLLAEKYQPVAHTAEGVIYRLR*
Ga0134110_100452002	3300012975	Grasslands Soil	AQYPVKNFPILAKLLAEQYQPVAHTAEGVIYRMR*
Ga0164308_107066391	3300012985	Soil	QDFARHPPIYIVDVQPDPKSAQYPVKNFPILAKLLADRYQRVAKTAEGVIYRMR*
Ga0164304_116954311	3300012986	Soil	RLTPTYIVDVQPDPKRAQNPVKNFPILAKLLAERYQPMAHSAEGKQ*
Ga0157373_107573371	3300013100	Corn Rhizosphere	TYIVDVQPDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR*
Ga0157371_102554052	3300013102	Corn Rhizosphere	TRHPPTYIVDVQPDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR*
Ga0157374_108477491	3300013296	Miscanthus Rhizosphere	TLVQDFARHPPAYIVDVQDPGNAEYPVKDFPILAKLLAEKYQPVAHTAEGVIYRVR*
Ga0157377_101490091	3300014745	Miscanthus Rhizosphere	PDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR*
Ga0137414_10006594	3300015051	Vadose Zone Soil	RPDPKSAYYPVKDFPILAKFLAERYQPEVQVAEGVIYRMR*
Ga0137414_10006601	3300015051	Vadose Zone Soil	PTRNPKSAYYPVKDFPILAKFLAERYQPEVQVAEGVIYRMR*
Ga0137414_11470551	3300015051	Vadose Zone Soil	RPDPKSAYYYPVKDFPILAKFLAERYQPEVQVAEGVIYRMR*
Ga0137418_106837011	3300015241	Vadose Zone Soil	YSHPGARYPVRNFPILAKLLAERYQLVTTTAEGDIYRMR*
Ga0134073_101565811	3300015356	Grasslands Soil	GAWTILEQDFATHPPTYIVDVHPDPKSAYYPVKNFPILAKLLADRYQPVAQTAEGVIYRMR*
Ga0134073_103586501	3300015356	Grasslands Soil	WSILQRDFAKHPPTYIVDVQSDSRTLQYPVKNFPILDTLLKERYQPVARTAEGTIYRMR*
Ga0134085_101523693	3300015359	Grasslands Soil	QHDFAKHSPTYIVDVQADPKMAPYPVKNFPILAKLLAEHYQPVARTAEGVIYGRR*
Ga0132258_111482753	3300015371	Arabidopsis Rhizosphere	SAYYPVKDFPILAKLLTDRYQPVARTAEGVIYRMR*
Ga0132255_1033655081	3300015374	Arabidopsis Rhizosphere	YIVDVQPDPRSAHYPVKDFPILAKLLTERYQPVAHTAEGVIYRMR*
Ga0182032_104970111	3300016357	Soil	VDVESDPNTAENPVKDFPILAKLLNTRYQPVARTDEGVIYRMH
Ga0182038_113763181	3300016445	Soil	DLYSQPGALYPTRDFPILSKLLAGQYRPVARTAEGVIYQIR
Ga0184621_100524771	3300018054	Groundwater Sediment	HPPTYIVDVQRDPKNAQYPVKNFPILAKFLADRYRPVAQTAEGVIYRMR
Ga0184619_103582371	3300018061	Groundwater Sediment	AKSAQRPVKNLPILAKLLAERYQPVAHTAEDVTYRIR
Ga0066662_127649381	3300018468	Grasslands Soil	QDFAKHPPAYIVDVQDPSKARYPVKDFPILAKLLGEQYEPVAHTAEGVIYRMR
Ga0066669_101924431	3300018482	Grasslands Soil	AKTAQYSVKNFPILAKLLAERCRPVAHTAEGVIYRMR
Ga0066669_114410821	3300018482	Grasslands Soil	PKSAHYPVKNFPISAKLLAEGYQPVAHTGEGVIYRMR
Ga0193704_10853511	3300019867	Soil	SAYYPVKDFRILARLLAERYQPVAQTAEGVIYRMR
Ga0193727_11471652	3300019886	Soil	DPKTAQDRITNFPILAKLLKERYQPVARTVEGMIYRMR
Ga0193735_11111762	3300020006	Soil	IVDVQADPKTAQHPVKNFPILAKLLAERYQLVAYTAEGVIYRMR
Ga0126371_136776942	3300021560	Tropical Forest Soil	ESDPKDAQDPVKDFPILANVLKERYQPVASTAEGVIYRMR
Ga0213880_100119011	3300021953	Exposed Rock	DPGWQYPVKNFPVLARLLADRYEAVTRTAQGTIYRLRPQ
Ga0179589_106389452	3300024288	Vadose Zone Soil	DFARHPPTYIVDVHPDPKSAQNPVKNFPILAKLLADRYQPVAQTAEGVIYRMR
Ga0207687_112656282	3300025927	Miscanthus Rhizosphere	PTYIVDVQPDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR
Ga0207691_111844122	3300025940	Miscanthus Rhizosphere	ERDFARHPPTYIIDVQSDTRTLQYPVKNFPILTKLLKERYQPVARTAEGVIYRMR
Ga0207702_103028821	3300026078	Corn Rhizosphere	WRTLGQDFTRHPPTYIVDVQPDPKSAQYPVQNFPILANLLADRYQPVAKTAEGVIYRMR
Ga0207698_111669683	3300026142	Corn Rhizosphere	VQSDTRTLQYPAKNFPILTKLLKERYQPVARTAEGVIYRMR
Ga0209234_12700051	3300026295	Grasslands Soil	ALEQDFARHPPTYIVDVQPDPKTAQYPVKNFPILAKLLAEQYQPVAHTAEGVIYRMR
Ga0209238_11098882	3300026301	Grasslands Soil	PDPKSAYYPVKDFPILAKFLAERYQPEVQVAEGVIYRMR
Ga0209239_11177701	3300026310	Grasslands Soil	TYIVDVQPDPKTAQYPVKNFPILAKLLAEQYQPVAHTAEGVIYRMR
Ga0209473_12554351	3300026330	Soil	DSRTLQYPVKNFPILDTLLKERYQPVARTAEGTIYRMR
Ga0257156_10806392	3300026498	Soil	QADPQTAQHPVKNFPILAKLLAERYQLVAYTAEGVIYRMR
Ga0209156_101182832	3300026547	Soil	YIVDVQSDSRTLQYPVKNFPILDTLLKERYQPVARTAEGTIYRMR
Ga0209577_100636443	3300026552	Soil	PTKAQYPVKDFPILAKLIAEKYRPVAHTAEGVIYRMR
Ga0179587_103446222	3300026557	Vadose Zone Soil	YIVDVHPDPKSAQNPVKNFPILAKLLAERYQPVAHTAEGVIYGMR
Ga0179587_106733611	3300026557	Vadose Zone Soil	HPDPKSAQNPVKNFPILAKLLADRYQPVAQTAEGVIYRMR
Ga0209325_10069552	3300027050	Forest Soil	PPAYIVDVQDPTKAQYPVKDFPILATLLNKRYHPVARTDEGVIYRMR
Ga0075374_110685642	3300030855	Soil	YIVDLQADPKTAQYPVKDFPILAKLLAEGYQPVAHTAEGVIYRMR
Ga0170822_143587591	3300031122	Forest Soil	WTNLEQDFARHPPIYIVDLQANPKTAQHPVKDFPILAKLLAEGYQPVEHTAEGVIYRMR
Ga0306917_105033302	3300031719	Soil	WAALEQDFARHPPKYIVDVESDPNTAENPVKDFPILAKLLNTRYQPVARTDEGVIYRMH
Ga0310910_110612452	3300031946	Soil	TYIVDVQPDPKSAHYPVKNFPILAKLLTERYQPVAHTAEGVIYQMR
Ga0310909_108299301	3300031947	Soil	DFARHPPKYIVDVESDPNTAENPVKDFPILAKLLNTRYQPVARTDEGVIYRMH
Ga0308176_111848351	3300031996	Soil	STLEQDFTRHSPTYIVDVQPDPKSAQYPVKNFPILAKLLADRYQPVAKTAEGVIYRMR
Ga0307470_103856401	3300032174	Hardwood Forest Soil	QNPVKNFPILAKLLAERYQPVAHTAEGVIYRTNVRP
Ga0307472_1002122423	3300032205	Hardwood Forest Soil	DPKTAQYPVKNFPILAKFLAERYQPVAHTVEGVIYRMR
Ga0307472_1008410892	3300032205	Hardwood Forest Soil	DVQPDPKSAQNPVKNFPILAKLLAERYQPVAHTAEGVIYRTNVRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097534

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences