Metagenome / Metatranscriptome Family F097436

Basic Information
Family ID	F097436
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	78 residues
Representative Sequence	IENLPRNLSALDDTGLRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRAS
Number of Associated Samples	92
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.02 %
% of genes near scaffold ends (potentially truncated)	27.88 %
% of genes from short scaffolds (< 2000 bps)	78.85 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Most Common Taxonomy
Group	Bacteria (59.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.077 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.308 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 0.00% Coil/Unstructured: 44.44%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01872	RibD_C	7.69
PF07883	Cupin_2	5.77
PF03706	LPG_synthase_TM	2.88
PF14534	DUF4440	1.92
PF00561	Abhydrolase_1	0.96
PF13365	Trypsin_2	0.96
PF00723	Glyco_hydro_15	0.96
PF03006	HlyIII	0.96
PF01266	DAO	0.96
PF04311	DUF459	0.96
PF02738	MoCoBD_1	0.96
PF04828	GFA	0.96
PF00005	ABC_tran	0.96
PF00211	Guanylate_cyc	0.96
PF08450	SGL	0.96
PF00903	Glyoxalase	0.96
PF08544	GHMP_kinases_C	0.96
PF03551	PadR	0.96
PF03795	YCII	0.96
PF06224	HTH_42	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	7.69
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	7.69
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	2.88
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.96
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.96
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.96
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.96
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.96
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.96
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	43.27 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.00 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	23.08 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.08 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	3.85 %
Bogoriellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.08 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.85 %
Georgenia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.08 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.85 %
Georgenia subflava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia subflava	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10265634	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300000956\|JGI10216J12902_100512752	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300002121\|C687J26615_10183385	Not Available	531	Open in IMG/M
3300002124\|C687J26631_10003128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6239	Open in IMG/M
3300003996\|Ga0055467_10042675	Not Available	1143	Open in IMG/M
3300005093\|Ga0062594_100231744	Not Available	1328	Open in IMG/M
3300005356\|Ga0070674_100007813	All Organisms → cellular organisms → Bacteria	6324	Open in IMG/M
3300005356\|Ga0070674_100617937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	918	Open in IMG/M
3300005456\|Ga0070678_100017197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4649	Open in IMG/M
3300005518\|Ga0070699_100054228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3470	Open in IMG/M
3300005543\|Ga0070672_100893912	Not Available	784	Open in IMG/M
3300005548\|Ga0070665_101769003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	625	Open in IMG/M
3300006049\|Ga0075417_10018704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2728	Open in IMG/M
3300006358\|Ga0068871_100620071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	985	Open in IMG/M
3300006575\|Ga0074053_10897017	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300006845\|Ga0075421_100016249	All Organisms → cellular organisms → Bacteria	9291	Open in IMG/M
3300006853\|Ga0075420_101556773	Not Available	567	Open in IMG/M
3300006865\|Ga0073934_10875195	Not Available	508	Open in IMG/M
3300006880\|Ga0075429_101081500	Not Available	701	Open in IMG/M
3300007004\|Ga0079218_10344379	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300009094\|Ga0111539_11496807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
3300009100\|Ga0075418_10432110	Not Available	1410	Open in IMG/M
3300009147\|Ga0114129_13366723	Not Available	515	Open in IMG/M
3300009156\|Ga0111538_11274858	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300009162\|Ga0075423_11706613	Not Available	678	Open in IMG/M
3300009176\|Ga0105242_10319085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1424	Open in IMG/M
3300009177\|Ga0105248_11113227	Not Available	893	Open in IMG/M
3300009802\|Ga0105073_1025649	Not Available	657	Open in IMG/M
3300009802\|Ga0105073_1051831	Not Available	547	Open in IMG/M
3300009810\|Ga0105088_1094882	Not Available	547	Open in IMG/M
3300009817\|Ga0105062_1040966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	831	Open in IMG/M
3300009818\|Ga0105072_1042597	Not Available	856	Open in IMG/M
3300009823\|Ga0105078_1036483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300009836\|Ga0105068_1053937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	731	Open in IMG/M
3300010166\|Ga0126306_10524680	Not Available	938	Open in IMG/M
3300010403\|Ga0134123_10200780	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300011003\|Ga0138514_100040760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	912	Open in IMG/M
3300012895\|Ga0157309_10144687	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300012902\|Ga0157291_10028550	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1180	Open in IMG/M
3300012909\|Ga0157290_10039847	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1158	Open in IMG/M
3300014254\|Ga0075312_1001917	All Organisms → cellular organisms → Bacteria	3171	Open in IMG/M
3300014325\|Ga0163163_10785955	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300014969\|Ga0157376_10428190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1286	Open in IMG/M
3300015371\|Ga0132258_10020242	All Organisms → cellular organisms → Bacteria	14492	Open in IMG/M
3300015371\|Ga0132258_10097973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6896	Open in IMG/M
3300015371\|Ga0132258_12294181	Not Available	1354	Open in IMG/M
3300015371\|Ga0132258_12989652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1172	Open in IMG/M
3300015372\|Ga0132256_100680976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1144	Open in IMG/M
3300015372\|Ga0132256_102409852	Not Available	629	Open in IMG/M
3300015373\|Ga0132257_100500965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1490	Open in IMG/M
3300015374\|Ga0132255_102947737	Not Available	727	Open in IMG/M
3300015374\|Ga0132255_103815268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300015374\|Ga0132255_104491921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591	Open in IMG/M
3300018053\|Ga0184626_10240469	Not Available	761	Open in IMG/M
3300018072\|Ga0184635_10251750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300018073\|Ga0184624_10035955	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300018073\|Ga0184624_10053948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1635	Open in IMG/M
3300018422\|Ga0190265_10033858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4285	Open in IMG/M
3300018422\|Ga0190265_11912749	Not Available	700	Open in IMG/M
3300018469\|Ga0190270_10263432	Not Available	1509	Open in IMG/M
3300018469\|Ga0190270_10324158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1386	Open in IMG/M
3300018476\|Ga0190274_12304885	Not Available	635	Open in IMG/M
3300019884\|Ga0193741_1154286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300022901\|Ga0247788_1089980	Not Available	599	Open in IMG/M
3300023266\|Ga0247789_1107292	Not Available	560	Open in IMG/M
3300025313\|Ga0209431_10115347	All Organisms → cellular organisms → Bacteria	2119	Open in IMG/M
3300025537\|Ga0210061_1073371	Not Available	594	Open in IMG/M
3300025559\|Ga0210087_1020618	Not Available	1346	Open in IMG/M
3300025908\|Ga0207643_10003688	All Organisms → cellular organisms → Bacteria	8237	Open in IMG/M
3300025910\|Ga0207684_11531258	Not Available	542	Open in IMG/M
3300025926\|Ga0207659_10760721	Not Available	831	Open in IMG/M
3300025934\|Ga0207686_10651228	Not Available	833	Open in IMG/M
3300025935\|Ga0207709_10077070	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300025935\|Ga0207709_11525523	Not Available	554	Open in IMG/M
3300025940\|Ga0207691_10170897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia subflava	1903	Open in IMG/M
3300026535\|Ga0256867_10018505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2996	Open in IMG/M
3300027379\|Ga0209842_1025220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1135	Open in IMG/M
3300027650\|Ga0256866_1126388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300027880\|Ga0209481_10359360	All Organisms → cellular organisms → Bacteria → Terrabacteria group	744	Open in IMG/M
3300027909\|Ga0209382_10138288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2830	Open in IMG/M
3300028720\|Ga0307317_10007451	All Organisms → cellular organisms → Bacteria	3249	Open in IMG/M
3300028771\|Ga0307320_10050534	Not Available	1535	Open in IMG/M
3300028791\|Ga0307290_10150882	Not Available	851	Open in IMG/M
3300028802\|Ga0307503_10021096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2143	Open in IMG/M
3300028803\|Ga0307281_10432290	All Organisms → cellular organisms → Bacteria → Terrabacteria group	507	Open in IMG/M
3300028814\|Ga0307302_10235178	Not Available	897	Open in IMG/M
3300028878\|Ga0307278_10048746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1920	Open in IMG/M
3300028889\|Ga0247827_10322838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	910	Open in IMG/M
3300030006\|Ga0299907_10091462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2487	Open in IMG/M
3300030619\|Ga0268386_10712223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300030986\|Ga0308154_104616	Not Available	792	Open in IMG/M
3300030988\|Ga0308183_1084762	Not Available	698	Open in IMG/M
3300031226\|Ga0307497_10150536	Not Available	966	Open in IMG/M
3300031228\|Ga0299914_10038685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4030	Open in IMG/M
3300031229\|Ga0299913_10168436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2164	Open in IMG/M
3300031908\|Ga0310900_10452233	Not Available	988	Open in IMG/M
3300031943\|Ga0310885_10413281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	721	Open in IMG/M
3300032013\|Ga0310906_10678499	Not Available	718	Open in IMG/M
3300032180\|Ga0307471_101483440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
3300033004\|Ga0335084_10265207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1778	Open in IMG/M
3300033551\|Ga0247830_10345486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1149	Open in IMG/M
3300034149\|Ga0364929_0238776	Not Available	609	Open in IMG/M
3300034643\|Ga0370545_082673	Not Available	675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.42%
Host-Associated	Host-Associated	35.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.73%
Plants	Host-Associated → Plants	35.58%
Aquatic	Environmental → Aquatic	7.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.62%
Sediment	Environmental → Aquatic → Sediment	3.85%
Marine	Environmental → Aquatic → Marine	2.88%
Roots	Host-Associated → Plants → Roots	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.35%
Sand	Environmental → Terrestrial → Soil → Sand	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.69%
Loam	Environmental → Terrestrial → Soil → Loam	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.35%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.92%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.58%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.92%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009802	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030986	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_143 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_102656344	3300000891	Soil	MIESLPQNLSGLDDNELRAARRDRDERMSLLFRSWPSLSKIELRELRKLNDERLRLARHVGIIRHLHALRASDTWTA*
JGI10216J12902_1005127522	3300000956	Soil	VIEDLPRNLLGLDEQDLRHARRDRDERMSFLFRRWPSVSKDELSELRKLSDERQRLARHVGILRALHALR*
C687J26615_101833852	3300002121	Soil	MIENLPQNLSRIESLPQNLSRLDDNELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDECQRLARHVGIIRRLHALRASDT
C687J26631_100031286	3300002124	Soil	MIENLPQNLSRIESLPQNLSRLDDNELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDECQRLARHVGIIRRLHALRASDTLDRVGM*
Ga0055467_100426752	3300003996	Natural And Restored Wetlands	MIESLPQNLSRLDDNELRAARRDRDERMSLLFRSWPSLSKIELRELRKLNDERLRLARHVGIIRHLHALRASDTWTA*
Ga0062594_1002317443	3300005093	Soil	MGPLTVVQVIESLPRNLTALDDTELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRPS*
Ga0070674_10000781311	3300005356	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSTLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSPTERL*
Ga0070674_1006179372	3300005356	Miscanthus Rhizosphere	MIADLPQNLARLDDNELRDARHDRDERMSALFRSWPSLSKVELRELRRLSDERQRLARHIGILRGLHALRNA*
Ga0070678_1000171975	3300005456	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSTLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSATERL*
Ga0070699_1000542283	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MVQVIEDLPRNLSALDDTELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRAS*
Ga0070672_1008939122	3300005543	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSSLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSA
Ga0070665_1017690031	3300005548	Switchgrass Rhizosphere	ADLPQNLARLDENELRDARHDRDERMALLFGRWSTLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTKSAPSATERL*
Ga0075417_100187044	3300006049	Populus Rhizosphere	VIESLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLRVLRGSKARAPESRLPA*
Ga0068871_1006200713	3300006358	Miscanthus Rhizosphere	VAVQMTADLPQNLARLDENELRDARHDRDERMALLFGRWSTLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSATERL*
Ga0074053_108970172	3300006575	Soil	SSPPMIESLPRNLSALDGDQLRAAGDARDARMSILFRSWPSLNKTELREIRQLSDERQRLARHVGIVRSLRRLRAPIRLR*
Ga0074050_100252651	3300006577	Soil	SLPRNLSALDGDQLRAAGDARDARMSILFRSWPSLNKTELREIRQLSDERQRLARHVGIVRSLRRLRAPIRLR*
Ga0075421_1000162493	3300006845	Populus Rhizosphere	VIESLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLHVLRGSKARAPESRLPA*
Ga0075420_1015567732	3300006853	Populus Rhizosphere	MGPLTVVQVIESLPRNLTALDDTELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRGLHALRDS*
Ga0073934_108751951	3300006865	Hot Spring Sediment	ENLPRNLSVLDDTELRDARQDRDERMSTLFRSWPSLSKLEMRELRKLSDERQRLAKHVGILRRLHALRVR*
Ga0075429_1010815003	3300006880	Populus Rhizosphere	EHLPRKLSMLDDTELGKAKLDRDERMSLLFRSWPLLSQIELRELRTLSDERQRLAKHAGALRGLHELRDS*
Ga0079218_103443792	3300007004	Agricultural Soil	LPTQVIENLPRNLAMLDELELRDARQDRDERMSTLFLSWPSLSKLEMRELRKLSEERQRLARHVGIRRRLHALRAS*
Ga0111539_114968072	3300009094	Populus Rhizosphere	MITDLPQNLARLDDNQLRDARHDRDERMSLLFGRWSALSKVELRELRRLSDERQRLARHVGILRGLHALRDS*
Ga0075418_104321101	3300009100	Populus Rhizosphere	MGPLTVVQVIESLPRNLTALDDTELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRTS*
Ga0114129_133667232	3300009147	Populus Rhizosphere	MVQVIENLPRNLSALDDIELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRA*
Ga0111538_112748583	3300009156	Populus Rhizosphere	LPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLHVLRGSKARAPESRLPA*
Ga0075423_117066132	3300009162	Populus Rhizosphere	MVQVIENLPRNLSALDDIELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRAS*
Ga0105242_103190853	3300009176	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSSLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTKSAPSATERL*
Ga0105248_111132271	3300009177	Switchgrass Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSSLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSPTERL*
Ga0105073_10256491	3300009802	Groundwater Sand	LRQEIENLPRNLLLLDNEELRDARRHRDERMSFLFHSWPSLSKIELRELRKLSDERQRLARHVGILRGLRALRASRHVRRVEVR*
Ga0105073_10518311	3300009802	Groundwater Sand	IENLPRNLSALDDTGLRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRAS*
Ga0105088_10948821	3300009810	Groundwater Sand	LRQEIENLPRNLLLLDNEELRDARRHRDERMSFLFHSWPSLSKIELRELRKLSDERQRLARHVGILRDLRALR
Ga0105062_10409663	3300009817	Groundwater Sand	ENLPRNLLLLDNEELRDARRHRDERMSFLFHSWPSLSKIELRELRKLSDERQRLARHVGILRGLRALRAS*
Ga0105072_10425971	3300009818	Groundwater Sand	LRQVIENLPKNLLLLDHEELRDATRHRDERMSFLFLSWSSLSKIELRELRKLSDERQRLARHVGILRGLRALRAS*
Ga0105078_10364832	3300009823	Groundwater Sand	RQEIENLPRNLLLLDNEELRDARRDRDERMSFLFQSWPSLSKIELRELRKLSDERQRLAKHVGILRGLRALRAS*
Ga0105068_10539371	3300009836	Groundwater Sand	IENLPRNLLLLDNEELRDARRHRDERMSFLFHSWPSLSKIELRELRKLSDERQRLARHLGILRGLHALRAS*
Ga0126306_105246802	3300010166	Serpentine Soil	VIENLPRNLSALDHTELGKARRDRDERMSLLFRRWPSLSDIELRELRELNDERQRLAKHVGILRGLHALRTP*
Ga0134123_102007803	3300010403	Terrestrial Soil	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSSLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSATERL*
Ga0138514_1000407602	3300011003	Soil	MQVTRSMAAIEDLPKNLSLLDHEQIQQAKQWRDERMALLFRDWPGLSNGDMRELRLLSDERQRLARHGGQVRRLRALR*
Ga0157309_101446871	3300012895	Soil	NLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLRVLRGSKARAPESRLPA*
Ga0157291_100285501	3300012902	Soil	VIQSLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLHVLRGSKARAPESRLPA*
Ga0157290_100398473	3300012909	Soil	VIQSLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLRVLRGSKARAPESRLPA*
Ga0075312_10019175	3300014254	Natural And Restored Wetlands	MIESLPQHLSRLDDNELRAARRDRDERMSLLFRSWPSLSKIELRELRKLNDERLRLARHVGIIRHLHALRASDTWTA*
Ga0163163_107859553	3300014325	Switchgrass Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSTLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSA
Ga0157376_104281902	3300014969	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSTLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTKSAPSATERL*
Ga0132258_1002024212	3300015371	Arabidopsis Rhizosphere	VSTARLLEDLPKDLLVLNDGELLDARRRRDERMSVLFADWPSLNSTELRELRTLNNERQRLARHVGRLRALHALRAF*
Ga0132258_100979736	3300015371	Arabidopsis Rhizosphere	MSHARAIQTLPKSLSLLDETELRAARRDRDERMSALFGRWPALSKIELRELRTLSDERQRLARHVGILRGLHALRAA*
Ga0132258_122941812	3300015371	Arabidopsis Rhizosphere	MSHARTIQTLPKSLSVLDETELRDARRNRDERMSVLFSRWPALSKIELRELRTLSDERQRLARHVGILRRLHALRAT*
Ga0132258_129896523	3300015371	Arabidopsis Rhizosphere	MSHARAIQTLPKSLSLLDETELRDARHDRDERMSALFGRWPALSKIELRELRTLSDERQRLARHVGILRRLHALRAA*
Ga0132256_1006809762	3300015372	Arabidopsis Rhizosphere	MALAPGAAERACADVIEKLPKNLTVLDEDELREARQDRDQRMSTLFAGWPSLTKLEMRELRTLSDERQRLARHVGIRRRLRALRAS*
Ga0132256_1024098521	3300015372	Arabidopsis Rhizosphere	MSHAQVIENLPGNLSLLDHDQLEDARQHRDERMSLLFRTWPALSNTELRELRKLSDERQRLARHVGILRRLHALR
Ga0132257_1005009652	3300015373	Arabidopsis Rhizosphere	MALAPGAAERACADVIEKLPKNLTVLDEDELRDARQDRDQRMSTLFAGWPSLTKLEMRELRTLSDERQRLARHVGIRRRLRALRAS*
Ga0132255_1029477372	3300015374	Arabidopsis Rhizosphere	VSTARLLEDLPKDLLALDDGELLDARRRRDERMSVLFADWPSLNSTELRELRTLNNERQRLARHVGRLRALHALRAL*
Ga0132255_1038152682	3300015374	Arabidopsis Rhizosphere	MSHVRAIQTLPKSLSLLDETELRDARHDRDERMSALFGRWPALSKIELRELRTLSDERQRLARHVGILRRLHALRAA*
Ga0132255_1044919211	3300015374	Arabidopsis Rhizosphere	MSHARAIQTLPKSLSQLDETELRDARQDRDERMSALFGRWPALSKIELRELRTLRDERQRLARHVGIPRRLHALRA
Ga0184626_102404692	3300018053	Groundwater Sediment	LRQVIENLPKNLLLLDHEELRDATRHRDERMSFLFLSWSSLSKIELRELRKLSDERQRLARHLGILRGLHALRAS
Ga0184635_102517501	3300018072	Groundwater Sediment	DQDELQDARQHRDERMSLLFRTWPTLSTTELRELRKLSDERQRLARHVGILRRLHALRASRPLMP
Ga0184624_100359554	3300018073	Groundwater Sediment	MIENLPGNLLLLDENELRTATHDRDERMSLLFRGWPALSKVELRELRRLSGERQRLARHHGILRRLHALRDVGSDRAPRLGSSTSLETTSLRR
Ga0184624_100539483	3300018073	Groundwater Sediment	VIENLPRNLSLLDQDELQDARQHRDERMSLLFRTWPTLSKTELRELRKLSDERQRLARHVGILRRLHALRASRHLMP
Ga0190265_100338586	3300018422	Soil	MTAAEGGAQVIANLPKSLLLLDHNELRDARHDRDERMSLLFRSWPSLTKVELRELRKLSDERQRLARHVGTLRSLHALRGSKTRAPEIRLSA
Ga0190265_119127491	3300018422	Soil	VLDDTELGKARRDRNERMSLLFRSWPSLSDIELRELRKLNDERQRLAKHVGILRRLHALRAT
Ga0190270_102634321	3300018469	Soil	MPLAVIGCLPRNLSSLGHDELRDARRDRDERMTVLFRRWASLSKDEFRELRKLSDERQRLARHGGNVRHLRALRTL
Ga0190270_103241581	3300018469	Soil	MAAQVIANLPRSLSTLGTLELRDARHERDERMSTLFLSWPSLSKLEMRELRKLSDERQRLARHVGIRRRLRALRAS
Ga0190274_123048852	3300018476	Soil	IADLPQNLSRLDDIELRAARHNRDERMSLLFRSWPSLSKVELRELRRLSDERQRLARHIGILRGLHALRDA
Ga0193741_11542861	3300019884	Soil	NLPTNLLQLDVNELRVARHQRDERMSLLFRSWSSLSKVELRELRRLSDERQRLAKHVGALRHLHALRAPRELGP
Ga0247788_10899802	3300022901	Soil	VIESLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLRVLRGSKARAPESRLPA
Ga0247789_11072922	3300023266	Soil	VIESLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRS
Ga0209431_101153473	3300025313	Soil	MIENLPQNLSRIESLPQNLSRLDDNELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDECQRLARHVGIIRRLHALRASDTLDRVGM
Ga0210061_10733712	3300025537	Natural And Restored Wetlands	MIESLPQHLSRLDDNELRAARRDRDERMSLLFRSWPSLSKIELRELRKLNDERLRLARHVGIIRHLHALRASDTWTA
Ga0210087_10206182	3300025559	Natural And Restored Wetlands	MIESLPQNLSRLDDNELRAARRDRDERMSLLFRSWPSLSKIELRELRKLNDERLRLARHVGIIRHLHALRASDTWTA
Ga0207643_100036885	3300025908	Miscanthus Rhizosphere	MGPLTVVQVIESLPRNLTALDDTELRDARHDRDERMSLLFRSWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRPS
Ga0207684_115312581	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MIADLPQNLTRLDDNELRVARHDRDERMSLLFGRWSSLSQFELRELRKLSDERQRLARHVGILRGLHALRAS
Ga0207659_107607211	3300025926	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSSLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSPTER
Ga0207686_106512281	3300025934	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSSLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTKSAPSATERL
Ga0207709_100770703	3300025935	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSTLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSATERL
Ga0207709_115255231	3300025935	Miscanthus Rhizosphere	MIADLPQNLARLDDNELRDARHDRDERMSALFRSWPSLSKVELRELRRLSDERQRLARHIGILRGLHALRNA
Ga0207691_101708974	3300025940	Miscanthus Rhizosphere	MTADLPQNLARLDENELRDARHDRDERMALLFGRWSSLSQVELRELRRLSDERQRLARHVGVLRGLHALRDSTRSAPSATE
Ga0256867_100185055	3300026535	Soil	VIAHLPRNLSVLDDTELGKARLDRDERMSLLFRSWPSLSDIELRELRRLNDERQRLARHLGTLRSLHALRASRTLAPEIRLPA
Ga0209842_10252202	3300027379	Groundwater Sand	LRQVIENLPKNLLLLDHEELRDARRHRDERMSFLFHSWPSLSKIELRELRKLSDERQRLARHLGILRGLHALRAS
Ga0256866_11263882	3300027650	Soil	MQVTRSFSTSLPKNLSVLDHNELRDARRHRDDRMSVLFRSWPSLTDIELRELRKLSDERQRLARHVGILRGPPRTPSLVTTQTEPVPV
Ga0209481_103593603	3300027880	Populus Rhizosphere	SLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLHVLRGSKARAPESRLPA
Ga0209382_101382881	3300027909	Populus Rhizosphere	MLDDIELGKAKLDRDERMSLLFRSWPLLSQIELRELRTLSDERQRLAKHAGALRGLHALRDS
Ga0307317_100074515	3300028720	Soil	MGPLRGAQMIENLPGNLLLLDENELRTATDDRDVRMSLLFRSWPSLSKVELRELRRLSHERQRLARHHGILRRLHALRGVSADRVPRLGR
Ga0307320_100505343	3300028771	Soil	MIENLPGNLLLLDENELRTATHDRDERMSILFRGWPALSKVELRELRRLSDERQRLARHHGILRRLHALRGPGPDRVPRLES
Ga0307290_101508822	3300028791	Soil	MIENLPGSLLLLDENELRTATDDRDVRMSLLFRSWPSLSKVELRELRRLSHERQRLARHHGILRRLHALRGVSADRVPRLGR
Ga0307503_100210963	3300028802	Soil	MSHTRVIESLPKNLSALDRNQIRDARQDRDDRMSVLFRSWPALSKIELRELRRLSDERQRLARHVGIVRRLRALRAS
Ga0307281_104322901	3300028803	Soil	NLPGNLLLLDANELRTATHDRDERMSLLFRSWPSLSKVELRELRRLSDERQRLARHLGILRRLHALRGLSSNRVPRLESRTSVETTSLRRSAVRQR
Ga0307302_102351781	3300028814	Soil	MIENLPGNLLLLDENELRTATDDRDVRMSLLFRSWPSLSKVELRELRRLSHERQRLARHHGILRRLHALRGVSADRVPRLGR
Ga0307278_100487461	3300028878	Soil	MENLPANLGALDREQLRQATLTRDERMSILFRLWPGLSTIEMRELRKLSDERQRIARHLGIIRRLHTLRTPRTAIEESARAV
Ga0247827_103228381	3300028889	Soil	MITDLPQNLARLDDNELRDARHDRDERMSLLFGRWSALSKVELRELRRLSDERQRLARHVGILRGLHALRDA
Ga0299907_100914623	3300030006	Soil	VNLPSNLSLLDHDELRDARHDRDERMSLLFRRWPSLTKVELRELRKLSDERQRLARHVGTLRSLHALRGSKAIAPETRLTA
Ga0268386_107122231	3300030619	Soil	MQVTRSFSTSLPKNLSVLDHNELRDARRHRDDRMSVLFRSWPSLTDIELRELRKLSDERQRLARHVGILRG
Ga0308154_1046162	3300030986	Soil	MIENLPGNLLLLDENALRNATLDRDERMSLLFRSWPSLSKVELRELRRLSHERQRLARHHGILRRLHALRGVSADRVPRLGR
Ga0308183_10847621	3300030988	Soil	MIENLPGNLLLLDENELRTATDDRDVRMSLLFRSWPSLTKVELRELRRLSHERQRLARHHGILRRLHALRA
Ga0307497_101505362	3300031226	Soil	MSHTHVIESLPKNLSALDRNQIRDARQDRDDRMSVLFRSWPALSKIELRELRRLSDERQRLARHVGIVRRLRALRAS
Ga0299914_100386853	3300031228	Soil	VLNDTELGKARLDRDERMSLLFRSWPSLSDIELRELRRLNDERQRLARHLGTLRSLHALRASRTLAPEIRLPA
Ga0299913_101684365	3300031229	Soil	VNLPSNLSLLDHDELRDARHDRDERMSLLFRRWPSLTKVELRELRKLSDERQRLARHVGTLRSLHALRGSKAAPETRLTA
Ga0310900_104522331	3300031908	Soil	VIESLPKNLSSLDHDQLRDARQDRDERMALLFQGWPSLSKTELAELRRLSDERQRLARHVGTLRSLHVLRGAKARAPESRLPA
Ga0310885_104132812	3300031943	Soil	MITDLPQNLARLDDNELRDARHDRDERMSLLFGRWSALSKVELRELRRLSDERQRLARHVGILRGLHALRDS
Ga0310906_106784991	3300032013	Soil	MGLLRGSAHVVADLPQNLTRLDDNELRDARRDRDERMSVLFRTWPSLSKIELRELRKLNDERQRLARHVG
Ga0307471_1014834402	3300032180	Hardwood Forest Soil	MIENLPQNLSRLGDGELRDARHARDERMSHLFRSWPSLSKVELRELRKLNDERQRLARHVGIIRRLHALRASDISDRVGV
Ga0335084_102652073	3300033004	Soil	VVQVIENLPRNLSVLDDTELRDARQDRDERMSILFRSWPSLSKLEMRELRMLSDERQRLARHVGIRRRLHVLRAS
Ga0247830_103454861	3300033551	Soil	MGLLRGSAHVVADLPQNLTRLDDNELRDARRDRDERMSVLFRTWPSLSKIELRELRKLNDERQRLARHVGILRRLHALRVS
Ga0364929_0238776_35_283	3300034149	Sediment	MIENLPGNLLLLDENELRTATHDRDERMSLLFRGWPALSKVELRELRRLSDERQRLARHHGILRRLHALRGPGPDRVPRLES
Ga0370545_082673_244_492	3300034643	Soil	MIENLPGNLLLLDENELRTATDDRDERMSLLFRSWPSLSKVELRELRRLSHERQRLARHHGIIRRLHALRGLSSDRVPQLRS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097436

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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