Basic Information | |
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Family ID | F097399 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 59 residues |
Representative Sequence | MSATHGGKGSKQRPTKDQKKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 53.85 % |
% of genes near scaffold ends (potentially truncated) | 33.65 % |
% of genes from short scaffolds (< 2000 bps) | 75.00 % |
Associated GOLD sequencing projects | 75 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (40.385 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (34.615 % of family members) |
Environment Ontology (ENVO) | Unclassified (79.808 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (99.038 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 8.47% β-sheet: 0.00% Coil/Unstructured: 91.53% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Marine Seawater Aqueous Seawater Marine Surface Water Sackhole Brine Freshwater To Marine Saline Gradient Seawater Estuarine Salt Marsh Marine Estuarine Estuarine Water Pelagic Marine Seawater Pelagic Marine Marine Seawater |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2010_1002371812 | 3300000101 | Marine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAKQESYAKKSKEK* |
DelMOSum2010_100418585 | 3300000101 | Marine | MSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS* |
DelMOSum2010_100740552 | 3300000101 | Marine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDAPSAVDDCATAKQESASKSKEK* |
DelMOSpr2010_101800211 | 3300000116 | Marine | VNRTMSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS* |
JGI20154J14316_100284047 | 3300001348 | Pelagic Marine | MGVNRTMSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSVVRGTRPTAVDDCATVTQESASKSKEK* |
JGI20154J14316_100330754 | 3300001348 | Pelagic Marine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKTKEK* |
Ga0075466_10101914 | 3300006029 | Aqueous | MSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDGKSSKS* |
Ga0075466_11713681 | 3300006029 | Aqueous | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK* |
Ga0075495_106134711 | 3300006399 | Aqueous | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKSKEK* |
Ga0101444_1054124 | 3300006620 | Marine Surface Water | MGVNWTMSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDKPSAVDDCATVTQEGFAKKSDTVKSSKP* |
Ga0098048_12273723 | 3300006752 | Marine | MSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDTPSAVDDCATVTQEGF |
Ga0075467_104476751 | 3300006803 | Aqueous | RPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK* |
Ga0098051_10659412 | 3300006924 | Marine | MGVDRTMSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDTPSAVDDCATVTQEGFAKKDENSSKS* |
Ga0099849_11992132 | 3300007539 | Aqueous | MSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDRPSAVDDCATVTQEGFAKKSDTVKSSKP* |
Ga0102810_10476411 | 3300009002 | Estuarine | MSGQWAGGKGSKQRKASDQNKFDSNWDAIFGKKDKPSAVDDCAEVTSESMSKDEDKKSK* |
Ga0102892_11151191 | 3300009057 | Estuarine | SKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS* |
Ga0115550_10929692 | 3300009076 | Pelagic Marine | MSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSVVRGTRPTAVDDCATVTQESASKSKEK* |
Ga0115562_12322113 | 3300009434 | Pelagic Marine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATVTQESASKSKEK* |
Ga0115561_13535151 | 3300009440 | Pelagic Marine | MSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSVVRGTRPTAVDDCATVTQESASK |
Ga0115007_100566555 | 3300009441 | Marine | MSATHGGKGSKQRPTADQKKFDNNWDDIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK* |
Ga0115563_10994571 | 3300009442 | Pelagic Marine | MSATHGGKGSKQRPTADQKKFDNNWGAIFGKKDKPSVVRGTRPTAVDDCATAQQESYAKKSKEK* |
Ga0115565_103228872 | 3300009467 | Pelagic Marine | DNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESYAKKSKEK* |
Ga0115571_10207111 | 3300009495 | Pelagic Marine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESAS |
Ga0115571_10911324 | 3300009495 | Pelagic Marine | QKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKTKEK* |
Ga0115571_11035284 | 3300009495 | Pelagic Marine | QNKFDSNWDAIFGKKDKPSVVRGTRPTAVDDCATVTQESASKSKEK* |
Ga0115572_100169865 | 3300009507 | Pelagic Marine | MSATHGGKGSKQRPTRDKNKFDTNWDAIFGKKDKPSAVDDCADVTAESAAKKDAKK* |
Ga0115572_102580203 | 3300009507 | Pelagic Marine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQE |
Ga0115572_107569122 | 3300009507 | Pelagic Marine | THGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSAVDDCATAKAESAANERKKRSS* |
Ga0115572_107676272 | 3300009507 | Pelagic Marine | ADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESYAKKSKEK* |
Ga0115003_100713348 | 3300009512 | Marine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDAPSAVDDCATAKQE |
Ga0115003_100932407 | 3300009512 | Marine | MSATHGGKGSKQRPTADQKKFDNNWDDIFGKKDAPSAVDDCATAKQESYAKKSK |
Ga0115103_11825263 | 3300009599 | Marine | MSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDKPSAVDDCATVTQEGFAKKDENSSKS* |
Ga0123359_1485502 | 3300009730 | Marine | SGSWAGGKGSKQRKTQDQKKFDENWDAIFGKKDRPSAVDDCATVTQEGFAKKSDTVKSSKP* |
Ga0098049_10264532 | 3300010149 | Marine | MSATHGGKGSKQRPTKDQKKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDENSSKS* |
Ga0129351_10377652 | 3300010300 | Freshwater To Marine Saline Gradient | MSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDKPSAVDDCATVTQEGFAKKSDTVKSSKP* |
Ga0133547_105694741 | 3300010883 | Marine | MSATHGGKGSKQRPTADQKKFDNNWDDIFGKKDAPSAVDDCATAKQESYAKKSKEK* |
Ga0163179_111478071 | 3300012953 | Seawater | MGKGSKQRPTDYKKFSSNYDQIFGKKDAPSAVDDCAKVTQESFVKKSKTKSK* |
Ga0181387_10969742 | 3300017709 | Seawater | MGVDRAMSGAWAGGKGSKQRKTTDQKKFEDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0181403_10062254 | 3300017710 | Seawater | MSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKDDKSSKS |
Ga0181403_10254452 | 3300017710 | Seawater | MSATHGGKGSKQRPTKDQKKFDQNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSK |
Ga0181403_10674052 | 3300017710 | Seawater | MGKGSKQRPTDYKKFSSNYDEIFGKKDAPSAVDDCAKVTQESFVKKSKTKSK |
Ga0181412_10861952 | 3300017714 | Seawater | MSATHGGKGSKQRPTGDQKKFDNNWDAIFGKKDPPSAVDDCATVTEESAMWEHYCTAEATKM |
Ga0181412_11269082 | 3300017714 | Seawater | MGVNRAMSTTHGGKGSKQRPTKDQKKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKEHGKSSKP |
Ga0181404_11539622 | 3300017717 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDQNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVK |
Ga0181390_10354051 | 3300017719 | Seawater | SKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0181388_10106787 | 3300017724 | Seawater | MSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDKPSAVDDCATVTQEGFAKKDENSSKS |
Ga0181419_10275192 | 3300017728 | Seawater | MGVDRAMSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDQPSAVDDCATVTQEGFAKKDGKSSKS |
Ga0181419_10464732 | 3300017728 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKEHGKSSKP |
Ga0181419_11802941 | 3300017728 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0181416_11019171 | 3300017731 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDQNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0187218_10015702 | 3300017737 | Seawater | MSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDKPSAVDDCATVTQEGFAKKDESSSKS |
Ga0181399_10166253 | 3300017742 | Seawater | MSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDQPSAVDDCATVTQEGFAKKDESSSKS |
Ga0181402_11559982 | 3300017743 | Seawater | MSATHGGKGSKQRPTKDQKKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS |
Ga0181397_11781442 | 3300017744 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKK |
Ga0181427_11516202 | 3300017745 | Seawater | KQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKEHGKSSKP |
Ga0181400_10363612 | 3300017752 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKDESSSKS |
Ga0181420_10874632 | 3300017757 | Seawater | MGVNRAMSTTHGGKGSKQRPTKDQKKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS |
Ga0181408_10792321 | 3300017760 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGF |
Ga0181408_11941282 | 3300017760 | Seawater | MGVNRTMSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS |
Ga0181422_10229422 | 3300017762 | Seawater | MSATHGGKGSKQRPTKDQKKFDQNWDAIFGKKDQPSAVDDCATVTQEGFAKKEHGKSSKP |
Ga0181422_10740793 | 3300017762 | Seawater | MSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSK |
Ga0181385_11002743 | 3300017764 | Seawater | MGVDRAMSGAWAGGKGSKQRKTKDQKKFDDNWDAIFGKKDKPSAVDDCATVTQE |
Ga0181413_12557052 | 3300017765 | Seawater | MGKGSKQRPTDYKKFSSNYDEIFGKKDAPSAVDDCAKVTQESFAKKPKRK |
Ga0181425_12654132 | 3300017771 | Seawater | MGKGSKQRPTDYKKFSSNYDQIFGKKDAPSAVDDCAKVTQESFAKKPKRK |
Ga0181386_10273076 | 3300017773 | Seawater | MSGAWAGGKGSKQRKTTDQKKFEDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0181386_10602055 | 3300017773 | Seawater | MDGVNRTMSATHGGKGSKQRPTKDQKRFNDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0181386_12589501 | 3300017773 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDKPSAVDDCATVTQEGFAKKDENSSKS |
Ga0181394_12011133 | 3300017776 | Seawater | MSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDKPSAVDDCATVTQEGFAKKDESSS |
Ga0181380_10812251 | 3300017782 | Seawater | MGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDESSS |
Ga0181379_10552581 | 3300017783 | Seawater | MSATHGGKGSKQRPTKDQKRFNDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSK |
Ga0181424_103140241 | 3300017786 | Seawater | MGVNRAMSTTHGGKGSKQRPTKDQKKFDQNWDAIFGKKDQPSAVDDCATV |
Ga0181424_103767022 | 3300017786 | Seawater | MGVNRAMSTTHGGKGSKQRPTKDQKKFDQNWDAIFGKKDQPSAVDDCATVT |
Ga0181552_100703382 | 3300017824 | Salt Marsh | MSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDRPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0181559_100881333 | 3300018415 | Salt Marsh | MGVNWTMSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDRPSAVDDCATVTQEGFAKKEHGKSSKP |
Ga0181563_101287282 | 3300018420 | Salt Marsh | MSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDKPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0206129_104100921 | 3300020182 | Seawater | KQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKTKEK |
Ga0206130_100668873 | 3300020187 | Seawater | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKTKEK |
Ga0211576_101071024 | 3300020438 | Marine | MGKGSKQRPTDYKKFSSNYDQIFGKKDAPSAVDDCAKVTQESFVKKSKTKSK |
Ga0206126_101174864 | 3300020595 | Seawater | QRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKTKEK |
Ga0206677_1001162519 | 3300021085 | Seawater | MSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKEHGKSSKP |
Ga0206682_1001536716 | 3300021185 | Seawater | MGVNRTMSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKEHGKSSKP |
Ga0213865_104597672 | 3300021373 | Seawater | MGVNWTMSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDKPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0213869_100621823 | 3300021375 | Seawater | MSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS |
Ga0213866_1001220215 | 3300021425 | Seawater | MSGSWAGGKGSKQRKTQDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0222717_100625695 | 3300021957 | Estuarine Water | MSGQWAGGKGSKQRKASDQNKFDSNWDAIFGKKDKPSAVDDCAEVTSESMSKDEDKKSK |
Ga0222717_101602002 | 3300021957 | Estuarine Water | MGVDRTMSATHGGKGSKQRPTKDQKKFESNWDAIFGKKDKPSAVDDCATVTQEGFAKKDESSSKS |
Ga0196889_10173285 | 3300022072 | Aqueous | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKSKEK |
Ga0224906_11551192 | 3300022074 | Seawater | MGVDRTMSATHGGKGSKQRPTKDQKKFDDNWDAIFGKKDQPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0212022_10658932 | 3300022164 | Aqueous | MSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDGKSSKS |
Ga0255755_11827712 | 3300022909 | Salt Marsh | MGVNWTMSGSWAGGKGSKQRKTQDQKKFDQNWDAIFGKKDRPSAVDDCATVTQEGFAKKSDTVKSSKP |
Ga0244775_104364602 | 3300024346 | Estuarine | MGVNRAMSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDDKSSKS |
Ga0208148_11293342 | 3300025508 | Aqueous | CHETAHLIKTEVRNMSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK |
Ga0208303_10022883 | 3300025543 | Aqueous | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK |
Ga0208660_10816501 | 3300025570 | Aqueous | IKTEVRNMSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK |
Ga0209716_10863792 | 3300025626 | Pelagic Marine | MSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSVVRGTRPTAVDDCATVTQESASKSKEK |
Ga0209198_10968563 | 3300025640 | Pelagic Marine | TADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESYAKKSKEK |
Ga0208643_10362823 | 3300025645 | Aqueous | QRQTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDGKSSKS |
Ga0208544_101516423 | 3300025887 | Aqueous | VCHETAHLIKTEVRNMSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK |
Ga0208020_11009561 | 3300027159 | Estuarine | HGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDGKSSKS |
Ga0208797_10346442 | 3300027186 | Estuarine | MGVDRTMSATHGGKGSKQRPTKDQNKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDGKSSKS |
Ga0209302_102745553 | 3300027810 | Marine | MSATHGGKGSKQRPTADQKKFDNNWDDIFGKKDKPSVVRGTRPTAVDDCATAQQESASKRKEK |
Ga0209092_100549202 | 3300027833 | Marine | MSATHGGKGSKQRPTKDQKKFDSNWDAIFGKKDKPSAVDDCATVTQEGFAKKDGKSSKS |
Ga0183755_10086756 | 3300029448 | Marine | MSATHGGKGSKQRPTKDQKRFDQNWDAIFGKKDKPSAVDDCATVTQENASKSKEK |
Ga0307488_104644531 | 3300031519 | Sackhole Brine | MSATHGGKGSKQRPTADQKKFDNNWDAIFGKKDAPSAVDDCATAKQESYAKKSKEK |
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