Metagenome / Metatranscriptome Family F097295

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097295
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	77 residues
Representative Sequence	TAKQKQLATQLQKLWLQTLPVVPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGKAGK
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.73 %
% of genes near scaffold ends (potentially truncated)	92.31 %
% of genes from short scaffolds (< 2000 bps)	89.42 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (40.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.61% β-sheet: 1.96% Coil/Unstructured: 78.43%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00528	BPD_transp_1	25.96
PF00005	ABC_tran	1.92
PF00496	SBP_bac_5	0.96
PF14748	P5CR_dimer	0.96
PF08352	oligo_HPY	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	46.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	26.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Unclassified	root	N/A	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002076\|JGI24749J21850_1049375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300005103\|Ga0066813_1017081	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005186\|Ga0066676_10855161	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005330\|Ga0070690_101272057	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005334\|Ga0068869_100852518	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300005334\|Ga0068869_101396259	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300005337\|Ga0070682_100829082	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300005343\|Ga0070687_100902832	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005347\|Ga0070668_100232506	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300005354\|Ga0070675_100135487	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300005355\|Ga0070671_100577292	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300005440\|Ga0070705_101214260	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005445\|Ga0070708_101912970	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005468\|Ga0070707_100735486	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300005536\|Ga0070697_100513393	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300005536\|Ga0070697_101054786	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300005543\|Ga0070672_102033457	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300005564\|Ga0070664_101174409	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300005566\|Ga0066693_10366222	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005718\|Ga0068866_10426064	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300005841\|Ga0068863_102350992	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006575\|Ga0074053_11917553	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300006903\|Ga0075426_10374294	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300006954\|Ga0079219_12341843	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300009012\|Ga0066710_103614414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300009036\|Ga0105244_10391027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300009038\|Ga0099829_10748583	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300009137\|Ga0066709_102717019	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300009176\|Ga0105242_11233049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	769	Open in IMG/M
3300009176\|Ga0105242_13322481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300010036\|Ga0126305_10084395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1878	Open in IMG/M
3300010036\|Ga0126305_10264484	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1109	Open in IMG/M
3300010044\|Ga0126310_10200958	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1311	Open in IMG/M
3300010044\|Ga0126310_10649887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	793	Open in IMG/M
3300010046\|Ga0126384_11287466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300010047\|Ga0126382_12384479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300010321\|Ga0134067_10207032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	723	Open in IMG/M
3300010326\|Ga0134065_10450403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300010359\|Ga0126376_11187921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	777	Open in IMG/M
3300010359\|Ga0126376_12888048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300010371\|Ga0134125_11490097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	737	Open in IMG/M
3300010373\|Ga0134128_13094183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300010399\|Ga0134127_11623837	All Organisms → cellular organisms → Bacteria → Terrabacteria group	721	Open in IMG/M
3300010399\|Ga0134127_12620019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300012200\|Ga0137382_10375598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	999	Open in IMG/M
3300012212\|Ga0150985_107865261	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300012351\|Ga0137386_11004040	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300012357\|Ga0137384_11161578	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300012519\|Ga0157352_1073613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300012532\|Ga0137373_10007445	All Organisms → cellular organisms → Bacteria	11627	Open in IMG/M
3300012895\|Ga0157309_10182245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300012901\|Ga0157288_10385347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300012951\|Ga0164300_10258946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	888	Open in IMG/M
3300012951\|Ga0164300_11149012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300012957\|Ga0164303_10039370	All Organisms → cellular organisms → Bacteria	2014	Open in IMG/M
3300012957\|Ga0164303_11537776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300012958\|Ga0164299_11301780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
3300012984\|Ga0164309_10643258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300012987\|Ga0164307_10768523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762	Open in IMG/M
3300015200\|Ga0173480_10834705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300015374\|Ga0132255_101903355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	904	Open in IMG/M
3300018028\|Ga0184608_10418686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300018066\|Ga0184617_1249805	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300019362\|Ga0173479_10228976	All Organisms → cellular organisms → Bacteria → Terrabacteria group	804	Open in IMG/M
3300019866\|Ga0193756_1017991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	972	Open in IMG/M
3300019873\|Ga0193700_1004634	All Organisms → cellular organisms → Bacteria	2087	Open in IMG/M
3300019876\|Ga0193703_1016051	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1140	Open in IMG/M
3300019878\|Ga0193715_1061180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	801	Open in IMG/M
3300021080\|Ga0210382_10368943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300021080\|Ga0210382_10536149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300022756\|Ga0222622_10019448	All Organisms → cellular organisms → Bacteria	3428	Open in IMG/M
3300025900\|Ga0207710_10285847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	831	Open in IMG/M
3300025903\|Ga0207680_10091055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1940	Open in IMG/M
3300025922\|Ga0207646_10296398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1461	Open in IMG/M
3300025926\|Ga0207659_10081133	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300025926\|Ga0207659_11260266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	635	Open in IMG/M
3300025927\|Ga0207687_11577154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300025929\|Ga0207664_10689083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	919	Open in IMG/M
3300025931\|Ga0207644_10543644	All Organisms → cellular organisms → Bacteria → Terrabacteria group	961	Open in IMG/M
3300025932\|Ga0207690_11441689	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300025933\|Ga0207706_10090448	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300025940\|Ga0207691_10101955	All Organisms → cellular organisms → Bacteria	2561	Open in IMG/M
3300025941\|Ga0207711_11544390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300025942\|Ga0207689_10185507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1716	Open in IMG/M
3300025942\|Ga0207689_11707012	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300026023\|Ga0207677_10444390	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1110	Open in IMG/M
3300026078\|Ga0207702_10484056	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1205	Open in IMG/M
3300026116\|Ga0207674_11376873	Not Available	675	Open in IMG/M
3300026121\|Ga0207683_10748343	All Organisms → cellular organisms → Bacteria → Terrabacteria group	907	Open in IMG/M
3300027560\|Ga0207981_1036318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	898	Open in IMG/M
3300028381\|Ga0268264_11838935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300028592\|Ga0247822_11503644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300028716\|Ga0307311_10032299	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1350	Open in IMG/M
3300028716\|Ga0307311_10133467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	708	Open in IMG/M
3300028721\|Ga0307315_10005186	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3160	Open in IMG/M
3300028768\|Ga0307280_10315272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300028778\|Ga0307288_10017669	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2254	Open in IMG/M
3300028778\|Ga0307288_10130769	All Organisms → cellular organisms → Bacteria → Terrabacteria group	934	Open in IMG/M
3300028778\|Ga0307288_10209349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300028796\|Ga0307287_10096226	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1115	Open in IMG/M
3300028819\|Ga0307296_10039965	All Organisms → cellular organisms → Bacteria	2476	Open in IMG/M
3300028876\|Ga0307286_10046116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1471	Open in IMG/M
3300028885\|Ga0307304_10111138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1106	Open in IMG/M
3300032013\|Ga0310906_10701861	All Organisms → cellular organisms → Bacteria → Terrabacteria group	707	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.27%
Host-Associated	Host-Associated	31.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.46%
Plants	Host-Associated → Plants	31.73%
Aquatic	Environmental → Aquatic	4.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.46%
Sediment	Environmental → Aquatic → Sediment	2.88%
Freshwater	Environmental → Aquatic → Freshwater	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.58%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300005103	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24749J21850_10493751	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	HRTAAQLQKLWLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSVLLFTRICPGGKSGP*
Ga0066813_10170811	3300005103	Soil	KVQHRTAAQLQKLWLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSVLLFTRICPGGKSGP*
Ga0066676_108551611	3300005186	Soil	LEKIFLQQLPIVPVMIGARWSTYSTKYFHCFPTAGNFYADPIFTTNPDAILLFTRICPGGKAGL*
Ga0070690_1012720572	3300005330	Switchgrass Rhizosphere	LNVWKNSLVSAKQRAAATALQKVFLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0068869_1008525182	3300005334	Miscanthus Rhizosphere	TLLNQWKNTLDIKKQRQIATKLQKIWLDQLPIVPVMIGARWSTYSTKYFHCFPTEQNFYADPIFTTNPDNILLFTTVCPGGKSGR*
Ga0068869_1013962591	3300005334	Miscanthus Rhizosphere	HFASPKALPLLNQWKATLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0070682_1008290822	3300005337	Corn Rhizosphere	NWHHFYDANATPPLNVWKNSLVSAKQRAAATALQKVFLQNLPIIPVVIGARWSTYSTKYFHCFPTSKNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0070687_1009028321	3300005343	Switchgrass Rhizosphere	QLQKLWLQNLPIVPVMIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSVLLFTRICPGGKSGP*
Ga0070668_1002325061	3300005347	Switchgrass Rhizosphere	ATLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0070675_1001354873	3300005354	Miscanthus Rhizosphere	LHPNAFIPSGQDGTPSGNWEHFASPKALPPLNQWKTTLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK*
Ga0070671_1005772922	3300005355	Switchgrass Rhizosphere	WKNSLVSAKQRAAATALQKVFLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0070705_1012142602	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	ANATSPLNVWKNSLVSAKQRAAATALQKLFLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0070708_1019129701	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TLDPKKQHKMATQLQKLWLQSLPIVPVMIGARWSTYSTKYFHCFPTAKSFYADPIFTTNPDNVLLFTRVCPGGKSGP*
Ga0070707_1007354861	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KATGLLNKWKVTIDEQKQHPIATQLEKLWLQDLPIIPVMIGARWSTYSTKYFHCFTTAQNFYADPIFTTFPDNILMFTRICPGAKSGK*
Ga0070697_1005133932	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	HYANPKATALLNKWKVTLDAKKQHSIATQLEKLWLQDLPVIPVMIGARWSTYSTKYFHCFPTAGNFYADPIFTTNPDNILLFTRICPGGKAGT*
Ga0070697_1010547861	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	GATNLLNQWKATLNPKTQHKTATQLQKLWLQNLPIVPVMIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSVLLFTRVCPGGKSGP*
Ga0070672_1020334572	3300005543	Miscanthus Rhizosphere	QLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0070664_1011744092	3300005564	Corn Rhizosphere	LNQWKATLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0066693_103662222	3300005566	Soil	SGTDASPTGNWEHFPHPAATSILNQWKNTLNPKKQHAAATKLEKIFLQQLPIVPVMIGARWSTYSTKYFHCFPTAGNFYADPIFTTNPDAILLFTRICPGGKAGL*
Ga0068866_104260641	3300005718	Miscanthus Rhizosphere	ALQKVFLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0068863_1023509922	3300005841	Switchgrass Rhizosphere	TTLDPKKQQAAATQLQKIFLQQLPIVPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0074053_119175532	3300006575	Soil	ALQKLFLQNLPIIPVMIGARWSTYSTKYFHCFPTSKNFYADPIFTTNPDNILLFTTVCPGGKAGR*
Ga0075426_103742941	3300006903	Populus Rhizosphere	TAKQKQLATQLQKLWLQTLPVVPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGKAGK*
Ga0079219_123418431	3300006954	Agricultural Soil	HRIATQLEKIFLQELPIVPVMIGARWSTYSTKYFHCFPTKQNFYADPIFTTNPDNVLLFTRICPGGQSGV*
Ga0066710_1036144142	3300009012	Grasslands Soil	HHMATQLQTLWLQRLPIVPVMIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPNNVLLFTRVCPGGKSGP
Ga0105244_103910272	3300009036	Miscanthus Rhizosphere	VTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNVLLFTTICPGGKAGK*
Ga0099829_107485832	3300009038	Vadose Zone Soil	TALLNKWKVTIDEKKQHPIATQLEKLWLQDLPIIPVMIGARWSTYSTKYFHCFTTANNFYADPIFTTFPDNILMFTRICPGAKAGA*
Ga0066709_1027170192	3300009137	Grasslands Soil	SILNQWKNTLNPKKQHAAATKLEKIFLQQLPIVPVMIGARWSTYSTKYFHCFPTAGNFYADPIFTTNPDAILLFTRICPGGKAGL*
Ga0105242_112330491	3300009176	Miscanthus Rhizosphere	LNQWKTTLVTAKQKQLATQLQKVWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNVLLFTTICPGGKAGK*
Ga0105242_133224811	3300009176	Miscanthus Rhizosphere	IWLDQLPIVPVMIGARWSTYSTKYFHCFPTEQNFYADPIFTTNPDNILLFTTVCPGGKSGR*
Ga0126305_100843951	3300010036	Serpentine Soil	KQRSIATQLQKLWLQDLPVIPVMIGARWSTYSTKYFHGFPKAKNFYADPIFTTTPDNILMFTRIAPGGKAGT*
Ga0126305_102644841	3300010036	Serpentine Soil	KQRSIATQLQKLWLQDLPVIPVMIGARWSTYSTKYFHGFPTAKNFYADPIFTTTPDNILMFTRVAPGGQAGT*
Ga0126310_102009582	3300010044	Serpentine Soil	KKQQKIATQLQKIFLKHLPVVPVMIGARWSTYSTKYFHCFPTNKDLYADPIFTTFPDNVLMFTRICPGSKTGV*
Ga0126310_106498872	3300010044	Serpentine Soil	LVEKKQQQIATQLQKIFLQNLPIVPVMIGARWSTYSTKYFHCFSSKRNFYADPIFTTYPDNVLAFTRICPGAQVGS*
Ga0126384_112874661	3300010046	Tropical Forest Soil	KKQKTIATKLQKIWLQTLPVVPVMIGARWSTYSTKYFHCFPTKQNFYADPIFTTYPDDILMFTRICPGGKSGL*
Ga0126382_123844792	3300010047	Tropical Forest Soil	EHFASPKALPLLNQWKATLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGQAGK*
Ga0134067_102070321	3300010321	Grasslands Soil	IFLQQLPIVPVMIGARWSTYSTKYFHCFPTAGNFYADPIFTTNPDAILLFTRICPGGKAGL*
Ga0134065_104504031	3300010326	Grasslands Soil	LDVKKQHKVATQLEKIWLQQFPIVLVMVGSRWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRICPGRKAGL*
Ga0126376_111879212	3300010359	Tropical Forest Soil	LDKLPIIPVMIGARWSTYSRKYFHCFPTAKNFYADPIFTTNPDNILLLTTICPGGKSGV*
Ga0126376_128880481	3300010359	Tropical Forest Soil	DVKKQRAVATQLQKIWLQQLPIIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGQAGK*
Ga0134125_114900971	3300010371	Terrestrial Soil	LWLQTLPVVPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0134128_130941832	3300010373	Terrestrial Soil	ATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0134127_116238372	3300010399	Terrestrial Soil	QKLFLQNLPIIPVMIGARWSTYSTKYFHCFPTSKNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0134127_126200191	3300010399	Terrestrial Soil	LNQWKVTLSEKKQHPIATQLEKLWLQDLPIIPVMIGARWSTYSTKYFHGFPTKPNFYADPIFTTNPDNILLFTRISPGGRAGT*
Ga0137382_103755982	3300012200	Vadose Zone Soil	AKATSLLDQWKGTLDLKKQHKMATQLQKLWLQSLPIVPVMIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP*
Ga0150985_1078652612	3300012212	Avena Fatua Rhizosphere	VVAAQLEKIFLQQMPIIPLVIGARWSTYSTKYFHCFTTANNFYADPIFTTYPDNVLLFTRICPGGKAGS*
Ga0137386_110040402	3300012351	Vadose Zone Soil	NWQHFSDAKATSLLDQWKGTLNPKKQHKMATQLQKLWLQSLPIVPVMIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGS*
Ga0137384_111615782	3300012357	Vadose Zone Soil	WQHFSDAKATSLLDQWKGTLDPKKQHKMATQLQKLWLQTLPIVPVMIGARWSTYSTKYFHCFATAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP*
Ga0157352_10736131	3300012519	Unplanted Soil	VTAKQKQLATQLQKLWLQTLPVVPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGKAGK*
Ga0137373_100074452	3300012532	Vadose Zone Soil	VTLNEKQQHQIATKIEKIFLQQLPIVPVMIGARWSTYSTKYFHCFPTSKSFYADPIFTTYPDNVLMFTRICPGEKAGA*
Ga0157309_101822451	3300012895	Soil	WEHFASPKALPLLNQWKATLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK*
Ga0157288_103853472	3300012901	Soil	AATALQKVFLQNLPIIPVVIGARWSTYSTKHFHCLPTAKNFYADPIFTTNPDNVLLFTRVCPGGKAGV*
Ga0164300_102589461	3300012951	Soil	LWLQNLPIVPVMIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGR*
Ga0164300_111490122	3300012951	Soil	VTAKQKQLATQLQKVWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGQAGK*
Ga0164303_100393703	3300012957	Soil	QKLFLQNLPIIPVMIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0164303_115377762	3300012957	Soil	ATKLLDQWKATLNPKTQHKTATQLQKLWLQNLPIVPVMIGARWSTYSTKYFHCFTSPKNYYADPIFNTFPDDVVTFTHICPGGQTGP*
Ga0164299_113017801	3300012958	Soil	VTAKQKQLATQLQKIWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK*
Ga0164309_106432582	3300012984	Soil	LNKWKVTLDEKKQYPIATQLEKLWLQDLPIIPVMIGARWSTYSTKYFHCFPTSKNFYADPIFTTNPDNILLFTTVCPGGKTRR*
Ga0164307_107685231	3300012987	Soil	YSHEGATKLLDQWKATLNPKTQHKTATQLQKLWLQNLPIVPVMIGARWSTYSTKYFHGFPTAKNFYADPIFTTYPDDILLFTRISPGGKAGL*
Ga0173480_108347051	3300015200	Soil	ALQKLFLQNLPIVPVMIGARWSTYSTKYFHCFPTARNFYADPIFTTNPDNILLFTTVCPGGKTGR*
Ga0132255_1019033552	3300015374	Arabidopsis Rhizosphere	LQDLPIIPVMIGARWSTYSTKYFHGFPTKPNFYADPIFTTNPDNILLFTRISPGGRAGT*
Ga0184608_104186862	3300018028	Groundwater Sediment	WLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0184617_12498051	3300018066	Groundwater Sediment	LSQWKVTLNPKKQQSIATKLQGIFLDKLPIVPLFIGPRWSTYSTKYFHCFPTEKNFYADPIFTTNPDNILLFTTICPGGQAGK
Ga0173479_102289761	3300019362	Soil	KQRAAATALQKVFLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNILLFTTVCPGGKTGR
Ga0193756_10179912	3300019866	Soil	NLLNQWKATLNLKTQHKTATQLQKLWLQNLPVVPVVIGARWSTYSTRYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0193700_10046341	3300019873	Soil	QLQKLWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSILLFTRICPGGKSGP
Ga0193703_10160512	3300019876	Soil	KIWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGQAGK
Ga0193715_10611802	3300019878	Soil	QKVWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0210382_103689432	3300021080	Groundwater Sediment	LQKVWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0210382_105361492	3300021080	Groundwater Sediment	KKQHTIATQLQKLWLQDLPIIPVVIGARWSTYSTKYFHCFPTAGNFYADPIFTTNPDNVLLFTRICPGGKAGR
Ga0222622_100194481	3300022756	Groundwater Sediment	KQLATQLQKIWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNKFYADPIFTTNPDNILLFTTICPGGQAGK
Ga0207710_102858471	3300025900	Switchgrass Rhizosphere	VWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSVLLFTRICPGGKSG
Ga0207680_100910553	3300025903	Switchgrass Rhizosphere	EGATNLLNQWKATLNPKVQHRTAAQLQKLWLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSVLLFTRICPGGKSGP
Ga0207646_102963983	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	KATGLLNKWKVTIDEQKQHPIATQLEKLWLQDLPIIPVMIGARWSTYSTKYFHCFTTAQNFYADPIFTTFPDNILMFTRICPGAKSGK
Ga0207659_100811333	3300025926	Miscanthus Rhizosphere	LHPNAFIPSGQDGTPSGNWEHFASPKALPPLNQWKTTLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK
Ga0207659_112602662	3300025926	Miscanthus Rhizosphere	TGNWEHFASPKALPLLNQWKATLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK
Ga0207687_115771541	3300025927	Miscanthus Rhizosphere	LNQWKTTLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK
Ga0207664_106890832	3300025929	Agricultural Soil	LNQWKSSLDPKVQHAAATKLEKIWLQQLPIIPVMIGARWSTYSTKYFHCFPTQQNFYADPIFTTYPDDTLLFTRICPGGKAGL
Ga0207644_105436442	3300025931	Switchgrass Rhizosphere	SLVSAKQRAAATALQKVFLQNLPIIPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNILLFTTVCPGGKTGR
Ga0207690_114416892	3300025932	Corn Rhizosphere	WKNTLDIKKQRQIATKLQKIWLDQLPIVPVMIGARWSTYSTKYFHCFPTEQNFYADPIFTTNPDNILLFTTVCPGGKSGR
Ga0207706_100904481	3300025933	Corn Rhizosphere	QKIWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGKAGK
Ga0207691_101019554	3300025940	Miscanthus Rhizosphere	TQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDSILLFTTICPGGKAGK
Ga0207711_115443901	3300025941	Switchgrass Rhizosphere	TAKQKQLATQLQKVWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK
Ga0207689_101855071	3300025942	Miscanthus Rhizosphere	PPLNQWKTTLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK
Ga0207689_117070122	3300025942	Miscanthus Rhizosphere	TLLNQWKNTLDIKKQRQIATKLQKIWLDQLPIVPVMIGARWSTYSTKYFHCFPTEQNFYADPIFTTNPDNILLFTTVCPGGKSGR
Ga0207677_104443901	3300026023	Miscanthus Rhizosphere	SLQKLFLQNLPIIPVMIGARWSTYSTKYFHCFPTSKNFYADPIFTTNPDNILLFTTVCPGGKTGR
Ga0207702_104840562	3300026078	Corn Rhizosphere	KQKQLATQLQKVWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK
Ga0207674_113768732	3300026116	Corn Rhizosphere	MRASPTQPIVPVVIGARWSTYSTRYFHCFPTAKNFYADPIFTTNPDSVLLFTRICPGGKSGP
Ga0207683_107483432	3300026121	Miscanthus Rhizosphere	KIWLQTLPVVPVMIGARWSTYSTKYFHCFPTKQNFYADPIFTTTPDDILLFTTICPGGKAGL
Ga0207981_10363182	3300027560	Soil	YDVKGTPPLNVWKNSLISAKQRASATALQKLFLQDLPIIPVVIGARWSTYSTKYFHGFPTAKNFYADPIFTTNPDNILLFTTVSPGGKAGR
Ga0268264_118389351	3300028381	Switchgrass Rhizosphere	TLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTSICPGGKAGK
Ga0247822_115036441	3300028592	Soil	WKTTLVTAKQKQLATQLQKLWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNNFYADPIFTTNPDNILLFTTICPGGQAGK
Ga0307311_100322992	3300028716	Soil	VQHRTATQLQKLWLQNLPIVPVVIGARWSTYSTRYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0307311_101334671	3300028716	Soil	PKIQHKTATQLQKVWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0307315_100051864	3300028721	Soil	IQQRTATQLQKLWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSILLFTRICPGGKSGR
Ga0307280_103152721	3300028768	Soil	ATNLLNQWKATLNPKIQQRTATQLQKLWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSILLFTRICPGGKSGR
Ga0307288_100176691	3300028778	Soil	QLQKLWLQNLPIVPVVIGARWSTYSTRYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0307288_101307692	3300028778	Soil	KIWLQTLPVIPVMIGARWSTYSTKYFHCFPTQNKFYADPIFTTNPDNILLFTTICPGGQAGK
Ga0307288_102093491	3300028778	Soil	DPKKQHKMATRLQKLWLQTLPIVPVMIGARWSTYSSRYFHCFPTAKNFYADPIFTTNPDNVLLFTRICPGGKSGR
Ga0307287_100962262	3300028796	Soil	QHKTATQLQKVWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0307296_100399654	3300028819	Soil	DPKKQHRMATQLQKLWLQTLPIVPVMIGARWSTYSSRYFHCFPTAKNFYADPIFTTNPDNVLLFARICPGGKSGR
Ga0307286_100461161	3300028876	Soil	TLLNQWKATLNPKIQHKTATQLQKVWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDNVLLFTRVCPGGKSGP
Ga0307304_101111382	3300028885	Soil	LNPKVQHKTATQLQKVWLQNLPIVPVVIGARWSTYSTKYFHCFPTAKNFYADPIFTTNPDSILLFTRICPGGKSGP
Ga0310906_107018612	3300032013	Soil	QKLWLQTLPVIPVMIGARWSTYSTKYFHCFPSPQNHYVRPIYNTYPENSVLLTTICRGGKKIKVGIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097295

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences