Metagenome / Metatranscriptome Family F097286

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097286
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	63 residues
Representative Sequence	VIDLLGLVVFTTVVSIGLLDLKSGLSPFAMYRSAAVTGVRRQVPATGRRGDDNQPRPPAPAR
Number of Associated Samples	82
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	70.19 %
% of genes near scaffold ends (potentially truncated)	29.81 %
% of genes from short scaffolds (< 2000 bps)	95.19 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.846 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (40.385 % of family members)
Environment Ontology (ENVO)	Unclassified (43.269 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00118	Cpn60_TCP1	0.96
PF00027	cNMP_binding	0.96
PF03976	PPK2	0.96
PF08240	ADH_N	0.96
PF01695	IstB_IS21	0.96
PF13564	DoxX_2	0.96
PF00501	AMP-binding	0.96
PF06965	Na_H_antiport_1	0.96
PF13592	HTH_33	0.96
PF01370	Epimerase	0.96
PF00872	Transposase_mut	0.96
PF00797	Acetyltransf_2	0.96
PF12833	HTH_18	0.96
PF07592	DDE_Tnp_ISAZ013	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.96
COG2162	Arylamine N-acetyltransferase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.96
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.96
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.96

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
All Organisms	root	All Organisms	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
cellular organisms	root	All Organisms → cellular organisms	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	43.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	26.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	23.08 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	22.12 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	0.96 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.96 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.96 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.96 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	4.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
unclassified Blastococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus	0.96 %
Actinomadura roseirufa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura roseirufa	0.96 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.96 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.96 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Pseudonocardia sp. DSM 110487	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. DSM 110487	4.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Arthrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	0.96 %
Blastococcus sp. DSM 44272	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. DSM 44272	0.96 %
Actinomadura roseirufa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura roseirufa	0.96 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.96 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2119805012\|FNTS067_GJ87FRN01AEFT6	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	529	Open in IMG/M
3300004463\|Ga0063356_102111209	Not Available	855	Open in IMG/M
3300004799\|Ga0058863_11442213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	917	Open in IMG/M
3300004800\|Ga0058861_10173878	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300004801\|Ga0058860_12004364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1108	Open in IMG/M
3300005328\|Ga0070676_11002834	Not Available	627	Open in IMG/M
3300005334\|Ga0068869_100552269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	968	Open in IMG/M
3300005344\|Ga0070661_100375352	Not Available	1120	Open in IMG/M
3300005344\|Ga0070661_100435858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1041	Open in IMG/M
3300005365\|Ga0070688_101303676	Not Available	586	Open in IMG/M
3300005441\|Ga0070700_100357802	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300005548\|Ga0070665_100238905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1817	Open in IMG/M
3300005578\|Ga0068854_101894006	Not Available	548	Open in IMG/M
3300005617\|Ga0068859_102660978	Not Available	550	Open in IMG/M
3300006580\|Ga0074049_11796887	Not Available	503	Open in IMG/M
3300006755\|Ga0079222_10285581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1066	Open in IMG/M
3300006755\|Ga0079222_11431468	Not Available	642	Open in IMG/M
3300006755\|Ga0079222_12067072	Not Available	562	Open in IMG/M
3300006806\|Ga0079220_10860278	Not Available	696	Open in IMG/M
3300006845\|Ga0075421_101068981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	909	Open in IMG/M
3300006853\|Ga0075420_100230869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1612	Open in IMG/M
3300007076\|Ga0075435_100523159	Not Available	1026	Open in IMG/M
3300009100\|Ga0075418_11302051	Not Available	788	Open in IMG/M
3300009148\|Ga0105243_10062584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. DSM 110487	2979	Open in IMG/M
3300009176\|Ga0105242_11104954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	807	Open in IMG/M
3300009789\|Ga0126307_10326810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1235	Open in IMG/M
3300009840\|Ga0126313_10947230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	704	Open in IMG/M
3300010036\|Ga0126305_10192633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1289	Open in IMG/M
3300010042\|Ga0126314_10595945	Not Available	806	Open in IMG/M
3300010044\|Ga0126310_10995598	Not Available	660	Open in IMG/M
3300010166\|Ga0126306_10124365	Not Available	1891	Open in IMG/M
3300010371\|Ga0134125_10171582	Not Available	2417	Open in IMG/M
3300010373\|Ga0134128_12458128	Not Available	574	Open in IMG/M
3300010375\|Ga0105239_12472170	Not Available	605	Open in IMG/M
3300010396\|Ga0134126_12225223	Not Available	598	Open in IMG/M
3300012212\|Ga0150985_107016147	Not Available	699	Open in IMG/M
3300012212\|Ga0150985_113854603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	678	Open in IMG/M
3300012212\|Ga0150985_118162886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1063	Open in IMG/M
3300012469\|Ga0150984_117028425	Not Available	544	Open in IMG/M
3300012469\|Ga0150984_118372684	Not Available	896	Open in IMG/M
3300012907\|Ga0157283_10191690	Not Available	637	Open in IMG/M
3300012915\|Ga0157302_10215409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura roseirufa	698	Open in IMG/M
3300012988\|Ga0164306_11370210	Not Available	600	Open in IMG/M
3300013307\|Ga0157372_13003734	Not Available	539	Open in IMG/M
3300013308\|Ga0157375_10507014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1370	Open in IMG/M
3300015371\|Ga0132258_10340910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3702	Open in IMG/M
3300018422\|Ga0190265_10725206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. DSM 110487	1116	Open in IMG/M
3300018432\|Ga0190275_10188881	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1938	Open in IMG/M
3300018432\|Ga0190275_11279191	All Organisms → cellular organisms → Bacteria → Terrabacteria group	809	Open in IMG/M
3300018466\|Ga0190268_10563168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	795	Open in IMG/M
3300018466\|Ga0190268_10679481	Not Available	751	Open in IMG/M
3300018466\|Ga0190268_11665149	Not Available	566	Open in IMG/M
3300018466\|Ga0190268_12336967	Not Available	505	Open in IMG/M
3300018469\|Ga0190270_12296610	Not Available	600	Open in IMG/M
3300018476\|Ga0190274_10734730	Not Available	1036	Open in IMG/M
3300018476\|Ga0190274_13167109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	553	Open in IMG/M
3300018920\|Ga0190273_10018338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3085	Open in IMG/M
3300018920\|Ga0190273_10062307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1938	Open in IMG/M
3300018920\|Ga0190273_10185358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. DSM 110487	1285	Open in IMG/M
3300018920\|Ga0190273_10254291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. DSM 110487	1142	Open in IMG/M
3300019257\|Ga0180115_1386028	Not Available	643	Open in IMG/M
3300019269\|Ga0184644_1452081	Not Available	518	Open in IMG/M
3300019361\|Ga0173482_10183384	Not Available	843	Open in IMG/M
3300019767\|Ga0190267_10434802	Not Available	748	Open in IMG/M
3300019767\|Ga0190267_11365893	Not Available	535	Open in IMG/M
3300020066\|Ga0180108_1257703	Not Available	640	Open in IMG/M
3300020069\|Ga0197907_10715996	Not Available	548	Open in IMG/M
3300020070\|Ga0206356_11096785	Not Available	597	Open in IMG/M
3300020076\|Ga0206355_1628332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	824	Open in IMG/M
3300020081\|Ga0206354_10909996	Not Available	532	Open in IMG/M
3300020082\|Ga0206353_10530122	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300025923\|Ga0207681_10236641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. DSM 44272	1420	Open in IMG/M
3300026142\|Ga0207698_12056025	Not Available	585	Open in IMG/M
3300028379\|Ga0268266_10445996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. DSM 110487	1230	Open in IMG/M
3300028596\|Ga0247821_10777624	Not Available	630	Open in IMG/M
3300028596\|Ga0247821_10829601	Not Available	611	Open in IMG/M
3300028721\|Ga0307315_10231756	Not Available	577	Open in IMG/M
3300030987\|Ga0308155_1015975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	657	Open in IMG/M
3300030988\|Ga0308183_1006760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1621	Open in IMG/M
3300030988\|Ga0308183_1126472	Not Available	608	Open in IMG/M
3300030990\|Ga0308178_1012959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1208	Open in IMG/M
3300030990\|Ga0308178_1112864	Not Available	589	Open in IMG/M
3300030993\|Ga0308190_1028618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	968	Open in IMG/M
3300030993\|Ga0308190_1142533	Not Available	563	Open in IMG/M
3300030994\|Ga0308153_101299	Not Available	1080	Open in IMG/M
3300030994\|Ga0308153_103840	Not Available	784	Open in IMG/M
3300031058\|Ga0308189_10205254	Not Available	717	Open in IMG/M
3300031091\|Ga0308201_10254202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	607	Open in IMG/M
3300031095\|Ga0308184_1018517	Not Available	731	Open in IMG/M
3300031099\|Ga0308181_1038649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	861	Open in IMG/M
3300031099\|Ga0308181_1094869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	637	Open in IMG/M
3300031099\|Ga0308181_1137570	Not Available	561	Open in IMG/M
3300031114\|Ga0308187_10448032	Not Available	520	Open in IMG/M
3300031123\|Ga0308195_1082315	Not Available	515	Open in IMG/M
3300031124\|Ga0308151_1018586	Not Available	703	Open in IMG/M
3300031421\|Ga0308194_10141156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	734	Open in IMG/M
3300031423\|Ga0308177_1017783	Not Available	605	Open in IMG/M
3300032080\|Ga0326721_10607338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	666	Open in IMG/M
3300034024\|Ga0334927_049883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1149	Open in IMG/M
3300034132\|Ga0334915_024437	Not Available	1177	Open in IMG/M
3300034135\|Ga0334929_016354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1648	Open in IMG/M
3300034137\|Ga0334943_067981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	679	Open in IMG/M
3300034173\|Ga0334925_007176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2553	Open in IMG/M
3300034669\|Ga0314794_122900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	578	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.12%
Host-Associated	Host-Associated	27.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.23%
Plants	Host-Associated → Plants	25.00%
Aquatic	Environmental → Aquatic	2.88%
Human	Host-Associated → Human	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.65%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Digestive System	Host-Associated → Human → Digestive System	2.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.69%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	4.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.88%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.88%
Loam	Environmental → Terrestrial → Soil → Loam	1.92%
Sand	Environmental → Terrestrial → Soil → Sand	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.88%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	40.38%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.85%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	3.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.88%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.96%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2119805012	Soil microbial communities from sample at FACE Site NTS_067 Nevada Test Site	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030994	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_142 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031423	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300034024	Biocrust microbial communities from Mojave Desert, California, United States - 23HNC	Environmental	Open in IMG/M
3300034132	Biocrust microbial communities from Mojave Desert, California, United States - 11HMC	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FNTS067_03252600	2119805012	Soil	EEYAAVIDLLGMVIFATVIGIGLLDAKSGLGPFAMYRSVAVTGVRWRAPTTESRGDDNQPRPPAPAR
Ga0063356_1021112091	3300004463	Arabidopsis Thaliana Rhizosphere	MRRHATVIDLLGMVVFATIVGIGLRDLRSGLSPFAMYRSPTVTGVHLRAPVTERRGDGNQPKPPAPAR*
Ga0058863_114422131	3300004799	Host-Associated	MVDLLGFVIFATVVGIGLLDVKSGLSPFAMYRSAAVVGVRRRAPVTGHSGDDDQSRPPAPAQ*
Ga0058861_101738783	3300004800	Host-Associated	MIDLLGLVVFTTIIGIGLLDLKSGLGPLAMYRSATVTGVRRQAAATGRRGDENQPRPPAPAR*
Ga0058860_120043641	3300004801	Host-Associated	MIDLLGLVVFTTIIGIGLLDLKSGLGPLAIYRSATVTGVRRQAAATGRRGDENQPRPPAPAR*
Ga0070676_110028342	3300005328	Miscanthus Rhizosphere	VIDFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAVIGVGPQAPGPGRHGDDKQPRPPAPAQ*
Ga0068869_1005522692	3300005334	Miscanthus Rhizosphere	MTVISIGLLDLKSGLGPFAMYRSGAVIGVGPQAPGPGRHGDDKQPRPPAPAQ*
Ga0070661_1003753524	3300005344	Corn Rhizosphere	VINFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAVIGVGPQAPGPGRHGDDKQPRPPAPAQ*
Ga0070661_1004358582	3300005344	Corn Rhizosphere	MVDFVGLVIFATIVGIGLLDVKSGLSPFATYRSAAVTGGRRRAPATGHRGDDDNQSRKTIG*
Ga0070688_1013036762	3300005365	Switchgrass Rhizosphere	LVIFATIIGIGLLDVKSGLSPFATYRSAAVTGGRRRAPATGHRGDDDNQSRKTIG*
Ga0070700_1003578022	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VVEFLGLVIFATIVGIGLLDVKSGLGPFAMYRSAGVISARRRAPAVGHGGDDKQPRPPTPAQ*
Ga0070665_1002389053	3300005548	Switchgrass Rhizosphere	VIDLLGLVIFATIIGIGLLDLRSGLGPFALYRSDAVIGVDRQTPVTGRRGDDNQPRPPASAH*
Ga0068854_1018940062	3300005578	Corn Rhizosphere	MIDLLGLVVFTTIIGIGLLDLKSGLGPLAIYRSATVTGVRRQAAASGRRGDENQPRPPAPAR*
Ga0068859_1026609781	3300005617	Switchgrass Rhizosphere	FATIIGIGLLDLRSGLGPFALYRSDAVIGVDRQTPVTGRRGDDNQPRPPASAH*
Ga0074049_117968871	3300006580	Soil	VVEFIGLVIFATIIGIGLLDVKSGLSPFATYRTAAVTGVRRRASATGHRGDDDNQSRRTIG*
Ga0079222_102855812	3300006755	Agricultural Soil	VVFITVITGLLDLKSGLGPFAMYRSGAVIGFDPQAPVPGRRGDNQPRPPAPAQ*
Ga0079222_114314682	3300006755	Agricultural Soil	MGPRILLAESFADKEHAAVMDLLGMAVFATIVGIGLLDMSSGIGPFAMYRSPTATGVQLRAPVKERRGDGNQPKPPAPAR*
Ga0079222_120670722	3300006755	Agricultural Soil	MIDLLGLVVFTTIIGIGLLDLKSGLGPLAMYRSATVTGVRRQAAATGRRGDENQPRPPAA
Ga0079220_108602783	3300006806	Agricultural Soil	LLGMVVFATIVGIGLLDLRSGLSPFATYRPPTVTGVRLRAPVTERRDDGNQPKPPAPAR*
Ga0075421_1010689812	3300006845	Populus Rhizosphere	ATEIDERAAMIDLLGMVVFATVVSIGLLDGRSGLSAFAIYRAPTASDVRRAPLTERGGGRNQPKPPAPAQ*
Ga0075420_1002308692	3300006853	Populus Rhizosphere	MIDLLGMVVFATVVSIGLLDGRSGLSVFAIYRAPTASDVRRAPLTERGGGRNQPKPPAPAQ*
Ga0075435_1005231594	3300007076	Populus Rhizosphere	IDFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAVIGVGPQAPGPGRHGDDKQPRPPAPAQ*
Ga0075418_113020511	3300009100	Populus Rhizosphere	MIDLLGMVVFATVVSIGLLDGRSGLSAFAIYRAPTASDVRRAPLTERGGGRNQPKPPAPAQ*
Ga0105243_100625843	3300009148	Miscanthus Rhizosphere	VIDFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAVIGVGPRAPGPGRHGDDKQPRPPAPAQ*
Ga0105242_111049541	3300009176	Miscanthus Rhizosphere	SRPTRTSTSRASRKYDEEHAAMIDLLGLVVFTTIIGIGLLDLKSGLGPLAIYRSATVTGVRRQAAATGRRGDENQPRPPAPAR*
Ga0126307_103268101	3300009789	Serpentine Soil	VIDLLGLVIFITIISIGMLDLKSGLGPFAMYRSGAVIGLDQQASVTARRGDDNQPRPPAPAR*
Ga0126313_109472301	3300009840	Serpentine Soil	VIDLLGLVLFITIIGIGLLDLKSGLGPFAMYRSGAAIGVDRQAPVTGRRGDHNQPRPPAPAR*
Ga0126305_101926332	3300010036	Serpentine Soil	VIDLLGLVIFVTIISIGLLDSKSGLGPFAMYRSGAVIGLDRQASVTGRRGDDNQPRPPAPAR*
Ga0126314_105959451	3300010042	Serpentine Soil	AAVIDLLGLVIFVTIISIGLLDSKSGLGPFAMYRSGAVIGLDRQASVTGRRGDDNQPRPPAPAR*
Ga0126310_109955981	3300010044	Serpentine Soil	EHAAVIDLLGLVVFITIIGIGMLDLKSGLGPFAMYRSGAAIGVDRQAPVTGRRGDHNQPRPPAPAR*
Ga0126306_101243652	3300010166	Serpentine Soil	VIDLLGLVIFVTIISIGLLDSKSGLGPFAMYRSGAVIGLDRQASVTGRRADDNQPRPPAPAR*
Ga0134125_101715824	3300010371	Terrestrial Soil	GMVVFVTIVSIGLLDLRSGLSPFAMYRSPTVTGVHLRAPVTERRGDGNQPKPPAPAR*
Ga0134128_124581281	3300010373	Terrestrial Soil	VIDLLGMVVFVTIVSIGLLDLRSGLSPFAMYRSPTVTGVHLRAPVTERRGDGNQPKPPAPAR*
Ga0105239_124721703	3300010375	Corn Rhizosphere	VIDLLGLVVFTTIIGIGLLDLKSGLGPLAIYRSATVTTVRRQAAAAGPRGAENQPRPPAPAR*
Ga0134126_122252231	3300010396	Terrestrial Soil	MVVFVTIVSIGLLDLRSGLSPFAMYRSPTVTGVHLRAPVTERRGDGNQPKPPAPAR*
Ga0150985_1070161471	3300012212	Avena Fatua Rhizosphere	EERAAVIDLLGMVVFATTVGIGLLDLRSGLGPFAVYRSPSLTGLDLRAPVTERRGDGNQPKPPAPAR*
Ga0150985_1138546033	3300012212	Avena Fatua Rhizosphere	VSDILGLVIFMTIVGIGLLDVKSGLSPFAMYRSATVAGIHRGAPAAGRGGDDNQPRPPAPAR*
Ga0150985_1181628862	3300012212	Avena Fatua Rhizosphere	VIDLLGLVVFATVISIGLLDLKSGLGPFAMYRSAAMTDVRRPAPATGRRGDDIQPR
Ga0150984_1170284251	3300012469	Avena Fatua Rhizosphere	MIELLGLVVFTTVIGIGLLDLKSGLSPFAMYRSATVTGGRRQAPATERRGDDNQPRPPAPAR*
Ga0150984_1183726841	3300012469	Avena Fatua Rhizosphere	VIDLLGMVVFATTVGIGLLDLRSGLGPFAVYRSPSLTGLDLRAPVTERRGDGNQPKPPAPAR*
Ga0157283_101916902	3300012907	Soil	VIDLLGLVVFATVISIGLLDLKSGLSPFAMYRSAAVTGVRRQVPATGRRGDDNQPGQPGPPAPAQ*
Ga0157302_102154091	3300012915	Soil	VIDLLGLVVFATVISIGLLDLKSGLSPFAMYRSAAVTGVRRQVPATGRRGDD
Ga0164306_113702101	3300012988	Soil	VVFTTAIGIGLLDLKSGLGPLAMYRSITVIGVRRQAPATGRGGEENQPRPPAPAR*
Ga0157372_130037342	3300013307	Corn Rhizosphere	MVVFVTIVSIGLLDLRSGLSPFAMYRSPTVTGVHLRAPVTERRGDGNQP
Ga0157375_105070141	3300013308	Miscanthus Rhizosphere	VIDLRGLVAFPTVVGSGLLDRTSGLSPFATYRSAAVTGVCRRAPATGRRDDNQPRSPAPAR*
Ga0132258_103409102	3300015371	Arabidopsis Rhizosphere	LEEVHAAVIDLLGLVIFMVVVGIGLLDVKSGLSPFAMYRSATVSGVGRRASSTGHRGDDNQPRPPTPAQ*
Ga0190265_107252062	3300018422	Soil	MIDLLGLVIFATIIGIGLLDLKSGLGPFAMYRSAAMTGVRRPAPATGRHGDDNRPRPPAPAQ
Ga0190275_101888811	3300018432	Soil	PISRKYEEEDAAVIDLLGLVIFVTIISIGLLDSKSGLGPFAMYRSGAVIGLDRQASVTGRRGDDNQPRPPAPAR
Ga0190275_112791911	3300018432	Soil	MKRSAAVIDLRGLVVFTTVVGSGLLDRTNGLSPFATYRLAAVTGVCRRAPASGRRDDNQPRPPAPAQ
Ga0190268_105631682	3300018466	Soil	VIELFGLVVFATVIGIGLLDLKSGLGPFAMYRSATVTGVRRQAPATGRRGDEN
Ga0190268_106794812	3300018466	Soil	VIDLFGLVVFTTVVGIGLLDMKSGLSPFAMYRSVTVTGVRRQAPATGRRGDDNQPRPPAPAR
Ga0190268_116651491	3300018466	Soil	NEQQRHSPGRAATDNDERAAVIDLLGMVVIATIVSIGLLDGRSGLSVFAIYRSPTASDVRRTPLTERGGGRNQPKPAAPAR
Ga0190268_123369672	3300018466	Soil	VIDLLGLVIFVTIISIGLLDSKSGLGPFAMYRSGAVIGLDRQASVTGRRGDDNQPRPPAPAR
Ga0190270_122966102	3300018469	Soil	MVDLVGFVIFATIIGIGLLDVKGGLGPFATYRSAAVTGVRRRAPATEHRGDDNQPRPPAPAR
Ga0190274_107347302	3300018476	Soil	MIDLLGLVIFATIIGIGLLDLKSGLGPFALSRSGPVIGVDRQAPVTGRRGDDNQPRPPASAH
Ga0190274_131671091	3300018476	Soil	CPACCDEEERAAVIDLLGLVVFTTVVGIGLLDRKSGLSPFAMYRSAAVTGVRRRASATGRGGDDNQPRPPAPAQ
Ga0190273_100183381	3300018920	Soil	VIDLLGLVVFATVTSIGLLDLKSGLGPFAMYSAVAMTEVRRPAPATGRHGDDNRPRPPAPAQ
Ga0190273_100623073	3300018920	Soil	VIDLFGLVVFTTIVGIGLMDMKSGLSPFAMYRSATVAGIRRQAPASARRGDDNQPRPPAPAR
Ga0190273_101853582	3300018920	Soil	MIDLLGLVIFATIIGIGLLDLKSGLGPFALYRSGAVIGVDRQTPVTRRRGDDNQPRPPASAH
Ga0190273_102542912	3300018920	Soil	VVIDLLGLVIFATIIGIGLLDLKSGLGPFALYRSDAVIGVDRQAPVTGRRGDDNQPRPSASAQ
Ga0180115_13860282	3300019257	Groundwater Sediment	MIDLLGLVVFTTVVSIGLLDLKSGLSPFAMYRSAAVTGVRRQVPATTGRSGDDNQRRPPTPAQ
Ga0184644_14520811	3300019269	Groundwater Sediment	LEEVHVAVIDLLGVVIFTVVVGIGLLNVKSGLSPFAMYRSATVSGVGRRASSTGHRGDDNQPRPPTPAQ
Ga0173482_101833842	3300019361	Soil	VIDLLGLVVFATVISIGLLDLKSGLSPFAMYRSTAVTGLRRQVPATGRRGDDNQPRPPTPAQ
Ga0190267_104348023	3300019767	Soil	DFDEEHAAVIDLLGLAVFATVICIGLLDLKSGLGPFAMYRSAAMTRVRRPAPATGRHGDDNRPRPPAPAQ
Ga0190267_113658932	3300019767	Soil	VIDLLGLVVFTTVVSIGLLDLKSGLSPFAMYRSAAVTGVRRQVPATGRRGDDNQPRPPAPAR
Ga0180108_12577032	3300020066	Groundwater Sediment	VVDLLGLVIFATIIGIGLLDVKGGLGPFATYRSAAVTGVRRRAPATEHRGDDNQPRPPAPAR
Ga0197907_107159961	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VIDFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAVIGVGPQAPGPGRHGDDNQPRPPAPAQ
Ga0206356_110967851	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MIDLLGLVVFTTIIGIGLLDLKSGLGPLAIYRSATVTGVRRQAAATGRRGDENQPRPPAPAR
Ga0206355_16283322	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	VVEFLGLVIFATIVGIGLLDVKSGLGPFAMYRSAGVISARRRAPAVGHGGDDKQPRPPTPAQ
Ga0206354_109099961	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	VIDFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAVIGVGPQAPGPGRHGDDKQPRPPAPAQ
Ga0206353_105301221	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VVEFLGLVIFATIVGIGLLDVKSGLGPFAMYRSAGVISARRRAPAVGHGGDDKQP
Ga0207681_102366412	3300025923	Switchgrass Rhizosphere	VIDFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAMVGVGPQAPATGRRGDDNRPRPPAPAQ
Ga0207698_120560252	3300026142	Corn Rhizosphere	VIDFLGLVVFMTVISIGLLDLKSGLGPFAMYRSGAVIGVGPQAPGPGRHGDDKQP
Ga0268266_104459962	3300028379	Switchgrass Rhizosphere	MIFATIIGIGLLDLRSGLGPFALYRSDAVIGVDRQTPVTGRRGDDNQPRPPASAH
Ga0247821_107776242	3300028596	Soil	MEIDERAAMIDLLGMVVFARVVSIGLLDGRSGLSAFAIYRAPTASDVRRAPLTERGGRNQPKPPAPAQ
Ga0247821_108296011	3300028596	Soil	VIDLLGLVVFATVISIGLLDLKSGLSPFAMYRSAAVTGVRRQVPATGRRGDDNQPGPPAPAQ
Ga0307315_102317562	3300028721	Soil	EEEHPAMIDLLGLVIFATIIGIGLLDLKSGLGPFALSRSGPVIGVDRQAPVTGRRGDDNQPRPPASAH
Ga0308155_10159752	3300030987	Soil	VIDLLGMVVFATIISIGLLDLRSGLSPFATYRSPTGTGVHLRAPVTERRGDGNQPKPPAPAR
Ga0308183_10067603	3300030988	Soil	MIDLLGMVVFATIVSIGLLDLRSGLSPFATYRSPTGTGVHLRAPVTERRGDGNQPKPPAPAR
Ga0308183_11264721	3300030988	Soil	MVDLVGFVIFATIIGIGLLDVKSGLSPFAMYRSAAVTGVRRRASASEHRGDDDNQ
Ga0308178_10129592	3300030990	Soil	MIDLLGMVVFATIVSIGLLDLRSGLSPFAMYRSPTGTGVHLRAPVTERRGDGNQPKPPAPAR
Ga0308178_11128641	3300030990	Soil	MRRHATVIDLLGMVVFATIVGIGLRDLRSGLSPFAMYRSPTVTGVHLRAPVTERRGDGNQPKPPAPAR
Ga0308190_10286182	3300030993	Soil	VIDLFGLVLFATVVGIGLLDVKSGIGPFAMYRSPMVTGVGRRAPMSKRRGDDNQPNPPAPAR
Ga0308190_11425331	3300030993	Soil	MIDLLGLVVFTTIIGIGLLDLKSGLGPLAMYRSATVTGVGRQAPATGRRGDENKPRPPAPAQ
Ga0308153_1012992	3300030994	Soil	MIDLLGLVIFATIIGIGLLDLKSGLGPFALYRSDAVIGVDRQTPVTGRRGDDNQPRPPASAH
Ga0308153_1038401	3300030994	Soil	MIDLLGMVVFATIVSIGLLDLRSGLSPFAMYRSPTVTGVHLRAPVTERRGDGNQPKPPAPAR
Ga0308189_102052541	3300031058	Soil	VIDLLGLVIFATIIGIGLLDLKSGLGPFALYRSGAVINVDRQSPVTGRRGDDKKPRPPAPAQ
Ga0308201_102542022	3300031091	Soil	MIDLLGLVIFATIIGIGLLDLRSGLGPFALYRSDAVIGVDRQTPVTGRRGDDNQPRPPASAH
Ga0308184_10185171	3300031095	Soil	GSVEEEHPAMIDLLGLVIFATIIGIGLLDLKSGLGPFAMYRSGAVINVDRQSPVTWRRGDDKKPRPPAPAQ
Ga0308181_10386492	3300031099	Soil	VIDLLGLVVFATVISIGLLDLKGGLSPFAMYRSAAVTGVRRQVPATGRSGDDNQPRPPTPAQ
Ga0308181_10948692	3300031099	Soil	AVIDLFGLVLFATVVGIGLLDVKSGIGPFAMYRSPMVTGVGRRAPMSKRRGDDNQPNPPAPAR
Ga0308181_11375702	3300031099	Soil	VIELLGLVIFATIISIGLLDLKSGLGPFAMYRSGAVINVDRQSPVTGRRGDDKKPRPPAPAQ
Ga0308187_104480322	3300031114	Soil	MVDLVGFVIFATIIGIGLLDVKSGLSPFAMYRSATVTGGRRWAPTPGRRGDDNQPRPPAPAR
Ga0308195_10823152	3300031123	Soil	LRLAVGAGGSVDEEHPAVIDLLGLVIFATIIGIGLLDLKSGLGPFALYRSGAVINVDRQSPVTGRRGDDKKPRPPAPAQ
Ga0308151_10185863	3300031124	Soil	MVDLVGFVIFATIIGIGLLDVKSGLGPFATYRSAAVTGVRRRAPAPEHRGDDNQPRPPAPAR
Ga0308194_101411562	3300031421	Soil	VIDLLGMVVFATIISIGLLDLRSGLSPFAMYRSPTGTGVHLRAPVTERRGDGNQPKPPAPAR
Ga0308177_10177831	3300031423	Soil	VIDLLGLVIFATIIGIGLLDLRSGLGPFALYRSDAVIGVDRQTPVTGRRGDDNQPRPPASAH
Ga0326721_106073382	3300032080	Soil	VIELLGLVVFATVICIGLLDLKSGLGPLAMYRSATVTGVRRQAAATGRRGD
Ga0334927_049883_181_363	3300034024	Hypolithic Biocrust	VIDLLGLVIFAVIVGIGLLDMKSGLGPFAMYRSPTGPRLAAVDTGDRGDGNQPEKPAPTR
Ga0334915_024437_468_653	3300034132	Hypolithic Biocrust	MTDLLGLLLFATIVAIGLLDARSGLGPFAMYRSATVTSGHRWARTGPRGDDNQTRPPEPA
Ga0334929_016354_1408_1647	3300034135	Hypolithic Biocrust	RTPTGPASNDDDEEHTVVIDLLGLVVFATVISIGLLDLGSGLGPFAMYRSTAMTDVRRQAPATGPRGDDGRPRPPAPAH
Ga0334943_067981_448_678	3300034137	Biocrust	TGPASNDDDEEHAVVIDLLGLVVFATVISIGLLDLGSGLGPFAMYRSTAMTDVRRQAPATGPRGDDDRPRPPAPAH
Ga0334925_007176_767_952	3300034173	Hypolithic Biocrust	MIDLLGLLVFLTIVAIGLLDMQSGLGPFAMYRSATVTGGHRRAPTGRRGDDNQTRPPEPA
Ga0314794_122900_1_186	3300034669	Soil	IDLLGLVVFTTIIGIGLLDLKSGLGPLAMYRSATVTGVRRQAAATGRRGDENQPRPPAPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097286

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences