Metagenome / Metatranscriptome Family F097284

Basic Information
Family ID	F097284
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	70 residues
Representative Sequence	RTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.92 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	93.27 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (78.846 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.577 % of family members)
Environment Ontology (ENVO)	Unclassified (45.192 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.385 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.33% β-sheet: 0.00% Coil/Unstructured: 51.67%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF02163	Peptidase_M50	25.00
PF13508	Acetyltransf_7	1.92
PF00583	Acetyltransf_1	0.96
PF00440	TetR_N	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.50 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9.62 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.88 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	9.62 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.88 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	9.62 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.85 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.92 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.96 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	9.62 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.92 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.96 %
Desulfuromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	9.62 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.92 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.96 %
Pelobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Pelobacter	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.15 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	9.62 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.92 %
Pelobacter seleniigenes	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Pelobacter → Pelobacter seleniigenes	0.96 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_11919198	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300001990\|JGI24737J22298_10124125	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300001991\|JGI24743J22301_10116565	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300003321\|soilH1_10120023	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1986	Open in IMG/M
3300003324\|soilH2_10275709	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300004156\|Ga0062589_100664072	Not Available	918	Open in IMG/M
3300005332\|Ga0066388_108606968	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005334\|Ga0068869_101468580	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	605	Open in IMG/M
3300005337\|Ga0070682_100573381	Not Available	887	Open in IMG/M
3300005338\|Ga0068868_102202589	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005339\|Ga0070660_101237118	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300005340\|Ga0070689_101423409	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005340\|Ga0070689_102110947	Not Available	516	Open in IMG/M
3300005345\|Ga0070692_10121769	Not Available	1456	Open in IMG/M
3300005354\|Ga0070675_100873713	Not Available	823	Open in IMG/M
3300005355\|Ga0070671_100642007	Not Available	919	Open in IMG/M
3300005364\|Ga0070673_102058846	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300005434\|Ga0070709_10617839	Not Available	836	Open in IMG/M
3300005445\|Ga0070708_101450624	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005535\|Ga0070684_101298481	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005543\|Ga0070672_101478168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	608	Open in IMG/M
3300005545\|Ga0070695_100878073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	723	Open in IMG/M
3300005547\|Ga0070693_101571220	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Pelobacter → Pelobacter seleniigenes	516	Open in IMG/M
3300005548\|Ga0070665_100148053	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2350	Open in IMG/M
3300005614\|Ga0068856_101892600	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005617\|Ga0068859_101149186	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300005618\|Ga0068864_101492376	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300005844\|Ga0068862_100891168	Not Available	874	Open in IMG/M
3300006580\|Ga0074049_12588003	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300006844\|Ga0075428_101877804	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300006845\|Ga0075421_100377396	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300006847\|Ga0075431_101491956	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300006853\|Ga0075420_101918544	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300006854\|Ga0075425_100087621	All Organisms → cellular organisms → Bacteria	3527	Open in IMG/M
3300006854\|Ga0075425_102564832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	564	Open in IMG/M
3300006871\|Ga0075434_101233676	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300006880\|Ga0075429_101639204	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300006918\|Ga0079216_11583913	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300006969\|Ga0075419_11370521	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300007004\|Ga0079218_11467390	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300007076\|Ga0075435_100215830	Not Available	1628	Open in IMG/M
3300009177\|Ga0105248_11797839	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300009840\|Ga0126313_11803502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	512	Open in IMG/M
3300010045\|Ga0126311_11627989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	544	Open in IMG/M
3300010166\|Ga0126306_10901801	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300010373\|Ga0134128_12946876	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300010403\|Ga0134123_11428335	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300011119\|Ga0105246_11477002	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300012212\|Ga0150985_103528957	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300012904\|Ga0157282_10130269	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300012910\|Ga0157308_10056417	Not Available	1039	Open in IMG/M
3300012955\|Ga0164298_10595154	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300012957\|Ga0164303_10561087	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	744	Open in IMG/M
3300012989\|Ga0164305_10034897	All Organisms → cellular organisms → Bacteria	2802	Open in IMG/M
3300013096\|Ga0157307_1096705	Not Available	622	Open in IMG/M
3300013100\|Ga0157373_10705460	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300013104\|Ga0157370_11031981	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300013296\|Ga0157374_11048966	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300013297\|Ga0157378_12230336	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300013308\|Ga0157375_10192398	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2195	Open in IMG/M
3300014326\|Ga0157380_13103904	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300014880\|Ga0180082_1096278	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300015077\|Ga0173483_10623827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	597	Open in IMG/M
3300015262\|Ga0182007_10142003	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300015371\|Ga0132258_12273250	Not Available	1360	Open in IMG/M
3300015372\|Ga0132256_102534956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	614	Open in IMG/M
3300015373\|Ga0132257_104224154	Not Available	523	Open in IMG/M
3300015374\|Ga0132255_103664711	Not Available	653	Open in IMG/M
3300018422\|Ga0190265_13728724	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300019377\|Ga0190264_12342088	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300021445\|Ga0182009_10819645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	510	Open in IMG/M
3300025893\|Ga0207682_10255257	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300025909\|Ga0207705_10714985	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300025920\|Ga0207649_10098658	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1928	Open in IMG/M
3300025920\|Ga0207649_10333413	Not Available	1118	Open in IMG/M
3300025921\|Ga0207652_11118463	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300025925\|Ga0207650_11122860	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300025926\|Ga0207659_10981594	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300025931\|Ga0207644_10450624	Not Available	1057	Open in IMG/M
3300025931\|Ga0207644_11032618	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300025931\|Ga0207644_11807534	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300025935\|Ga0207709_11534611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	553	Open in IMG/M
3300025937\|Ga0207669_10981506	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300025938\|Ga0207704_11671878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	547	Open in IMG/M
3300025942\|Ga0207689_10437931	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300025942\|Ga0207689_11629211	Not Available	536	Open in IMG/M
3300026035\|Ga0207703_12249481	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300026095\|Ga0207676_10266642	Not Available	1549	Open in IMG/M
3300027886\|Ga0209486_10512497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	747	Open in IMG/M
3300028380\|Ga0268265_11288582	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300028587\|Ga0247828_11130917	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031548\|Ga0307408_101356619	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031852\|Ga0307410_11421748	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300031901\|Ga0307406_10035291	All Organisms → cellular organisms → Bacteria	3074	Open in IMG/M
3300031901\|Ga0307406_12000883	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300031903\|Ga0307407_10447688	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300031939\|Ga0308174_10459145	Not Available	1036	Open in IMG/M
3300031943\|Ga0310885_10148998	Not Available	1117	Open in IMG/M
3300031996\|Ga0308176_11083600	Not Available	847	Open in IMG/M
3300032075\|Ga0310890_10025244	All Organisms → cellular organisms → Bacteria	3117	Open in IMG/M
3300032205\|Ga0307472_101225168	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300033412\|Ga0310810_10064905	All Organisms → cellular organisms → Bacteria	4419	Open in IMG/M
3300033475\|Ga0310811_10716236	Not Available	962	Open in IMG/M
3300033550\|Ga0247829_10922113	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.69%
Environmental	Environmental	42.31%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.69%
Terrestrial	Environmental → Terrestrial	41.35%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	40.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.31%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.46%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_119191982	3300000890	Soil	TLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES*
JGI24737J22298_101241251	3300001990	Corn Rhizosphere	GAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES*
JGI24743J22301_101165652	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	VRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
soilH1_101200233	3300003321	Sugarcane Root And Bulk Soil	VIESHLTSGDAEVRELISLSFLASIDASPANEVLRLHFGPSLRAEAARRDGWEARG*
soilH2_102757093	3300003324	Sugarcane Root And Bulk Soil	GDAEVRELITLSFLDSIDASPANEVLRLHFGPTLRAEAARRDGWTDEA*
Ga0062589_1006640722	3300004156	Soil	ARTLVTVIETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0066388_1086069682	3300005332	Tropical Forest Soil	LTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWAES*
Ga0068869_1014685801	3300005334	Miscanthus Rhizosphere	GDTARTLVDVIETHLTSGDAEVRELITLSFLDAIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0070682_1005733812	3300005337	Corn Rhizosphere	RTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ
Ga0068868_1022025891	3300005338	Miscanthus Rhizosphere	TQVAGWLSGTMHAAGEQTIPGGAAGDAARTLVGVIETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD*
Ga0070660_1012371182	3300005339	Corn Rhizosphere	IETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0070689_1014234092	3300005340	Switchgrass Rhizosphere	HLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWIES*
Ga0070689_1021109471	3300005340	Switchgrass Rhizosphere	HDALHPEMFIAQVAAWLSGTLHAAGEQTIPGGAGGHVARTLVEVIETHLTTGDAEVRELIALTFLDSVDASPANEVLRLHFGPSLRAEVARRDGWSVN*
Ga0070692_101217693	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	ELFMSQVTGWLSGTVCAADGHTVPGGAGGDTARTLVDVIETHLTSGDAEVRELITLSFLDAIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0070675_1008737131	3300005354	Miscanthus Rhizosphere	TLVDVIETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD
Ga0070671_1006420071	3300005355	Switchgrass Rhizosphere	HTIEGGAGGEAARTLVGVMETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNES*
Ga0070673_1020588462	3300005364	Switchgrass Rhizosphere	DALLPELFITQVAGWLSGTMHAAGEHTIPGGAGGDAARTLVGVLETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD*
Ga0070709_106178391	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VIETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNES*
Ga0070708_1014506242	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES*
Ga0070684_1012984812	3300005535	Corn Rhizosphere	PELFITQVAGWLSGTTHAAGEHTIPGGAGGDAARTLVGVLETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD*
Ga0070672_1014781681	3300005543	Miscanthus Rhizosphere	APDGHTIPGGASGDTARTLVDVIETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0070695_1008780731	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	LLPDLFMAQVASWVSGTMQAPGAHTIEGGAGGDAARTLVGVIETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES*
Ga0070693_1015712202	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LSGTMHAAGEHTIPGGAGGDAARTLVGVIETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD*
Ga0070665_1001480535	3300005548	Switchgrass Rhizosphere	RTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Ga0068856_1018926001	3300005614	Corn Rhizosphere	LHDALLPDLFMAQVASWVSGTMHTPGAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0068859_1011491861	3300005617	Switchgrass Rhizosphere	SGTMHTPGAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0068864_1014923761	3300005618	Switchgrass Rhizosphere	HLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES*
Ga0068862_1008911682	3300005844	Switchgrass Rhizosphere	DAEVRELITLSFLGSIDASPANEVLRLHFGPSLRAEAARRDGWVDD*
Ga0074049_125880031	3300006580	Soil	SGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTSD*
Ga0075428_1018778042	3300006844	Populus Rhizosphere	GDAEVRELITLSFLGSIDASPANEILRLHFGPSLRAEAARRDGWALDD*
Ga0075421_1003773961	3300006845	Populus Rhizosphere	HAPGAQTIEGGAGGEAARTLVRVIETHLTSGDAEVRELISLSFLNSVDASPANEVLRLHFGPSLRAEAARRDGWTSE*
Ga0075431_1014919561	3300006847	Populus Rhizosphere	LLPEVFMAQVTAWLSGTMRATGTQTIEGGAAGEAARTLVGVIESHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWSNES*
Ga0075420_1019185441	3300006853	Populus Rhizosphere	GVIESHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWSNES*
Ga0075425_1000876217	3300006854	Populus Rhizosphere	VIETHLTSGDAEVRELIALSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWTES*
Ga0075425_1025648322	3300006854	Populus Rhizosphere	TLVGVIESHLTSGDAEVRELITLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWEESRES*
Ga0075434_1012336762	3300006871	Populus Rhizosphere	PELFMSQVAGWVSGTTHAPGARTIDGGAGGEAARTLVGVIESHLTSGDAEVRELITLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWEESRES*
Ga0075429_1016392041	3300006880	Populus Rhizosphere	DAEVRELISLSFLPSIDASPANEVLRLHFGPSLRAEAARRDGWSD*
Ga0079216_115839131	3300006918	Agricultural Soil	ITEWLSGTRHAANVGTIPGGAGGEEARTVVGVIETHLASGDAEVRELIALSFLSSINESPANEVLRLHFGPSLRAEAARRDGWLAD*
Ga0075419_113705212	3300006969	Populus Rhizosphere	VPGGAGGEAARTLVGVIESHLTSGDAEVRELISLSFLSSIDESPANEVLRLHFGPSLRAEAARRDGWSD*
Ga0079218_114673902	3300007004	Agricultural Soil	PDVFMTQITEWLSGTRYAADAGTIPGGAGGEEARTVVGVIETHLASGDAEVRELISLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWLDG*
Ga0075435_1002158303	3300007076	Populus Rhizosphere	VASWVSGTMQAPGAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWTES*
Ga0105248_117978392	3300009177	Switchgrass Rhizosphere	EGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0126313_118035021	3300009840	Serpentine Soil	IGLTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWLAD*
Ga0126311_116279891	3300010045	Serpentine Soil	PDGQTVPGGAAGDTARTLVDVIETHLTSGDAEVRELITLSFLASIDASPANEILRLHFGPSLRAEAARRDGWALDD*
Ga0126306_109018011	3300010166	Serpentine Soil	HLALNDALLPELFIAQVTGWLSGTMHAVGERTIPGGAAGDAARTVVGVIETHLTSGDADVRELIAFSFLDSIDASPASEVLRLHFGPSLRAEAARRDGWEHRPLADA*
Ga0134128_129468762	3300010373	Terrestrial Soil	LALHDALLPDLFMAQVASWVSGTMHTPGAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0134123_114283351	3300010403	Terrestrial Soil	THLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0105246_114770021	3300011119	Miscanthus Rhizosphere	TSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0150985_1035289571	3300012212	Avena Fatua Rhizosphere	RTLVEVIETHLTTGDAEVRELIALTFLDSVDAGPANGVLRLHFGPSLRAEAARRDGWSVN
Ga0157282_101302692	3300012904	Soil	GVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES*
Ga0157308_100564171	3300012910	Soil	AAGDTARTLVDVIETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0164298_105951541	3300012955	Soil	VSGIMHTPGAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEEARRDGWNES*
Ga0164303_105610871	3300012957	Soil	PDLFMAQVASWVSGTMHAPGAHTIEGGAGGEAARTLVGVMETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNES*
Ga0164305_100348972	3300012989	Soil	MHAPGAHTIEGGAGGEAARTLVGVMETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNES*
Ga0157307_10967052	3300013096	Soil	MHDALLPELFMSQVTGWLSGTVYAPDGHTIPGGAAGDTARTLVDVIETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0157373_107054602	3300013100	Corn Rhizosphere	GAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0157370_110319811	3300013104	Corn Rhizosphere	ALHDALLPDLFMAQVASWVSGTMHAPGAHTIEGGAAGEAARTLVAVIETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0157374_110489662	3300013296	Miscanthus Rhizosphere	LHAAGEQTIPGGAGGHVARTLVEVIETHLTTGDAEVRELIALTFLDSVDAGPANEVLRLHFGPSLRAEVARRDGWSVN*
Ga0157378_122303362	3300013297	Miscanthus Rhizosphere	VGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGQSLRAEAARRDGWNEQ*
Ga0157375_101923984	3300013308	Miscanthus Rhizosphere	ARTLVDVIETHLTSGDAEVRELITLSFLDAIDASPANEVLRLHFGPSLRAEAARRDGWALDD*
Ga0157380_131039041	3300014326	Switchgrass Rhizosphere	HAPGDHTIEGGAGGVAARTLVGVMETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNES*
Ga0180082_10962781	3300014880	Soil	HTVPGGAAGDAARTLVTVIETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLKAEAARRDGWGLDD*
Ga0173483_106238272	3300015077	Soil	TLVDVIETHLTSGDAEVRELITLSFLDAIDASPANEVLRLHFGPSLRAEAARRDGWALED
Ga0182007_101420032	3300015262	Rhizosphere	EAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ*
Ga0132258_122732502	3300015371	Arabidopsis Rhizosphere	VIETHLTTGDAEVRELIALTFLDSVDASPANEVLRLHFGPSLRAEVARRDGWSVN*
Ga0132256_1025349561	3300015372	Arabidopsis Rhizosphere	ISGTTHSPGAHTIEGGAGGEAARTLLGVIETHLTSGDAEVRELISLSFLASVDASPANEVLRLHFGPSLRAEAARRDGWDES*
Ga0132257_1042241541	3300015373	Arabidopsis Rhizosphere	GAGGHVARTLVEVIETHLTTGDAEVRELIALTFLDSVDAGPANEVLRLHFGPSLRAEVARRDGWSVN*
Ga0132255_1036647112	3300015374	Arabidopsis Rhizosphere	ELFITQVAGWLSGTMHAAGEHTIPGGAGGDAARTLVGVIETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD*
Ga0190265_137287241	3300018422	Soil	TAWLSGTMHAAGDRTIPGGAGGEAARTLVGVIESHLTSGDAEVKELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWDQTHD
Ga0190264_123420881	3300019377	Soil	HDALLPDVFMAQITEWLSGTRFAANVGTIPGGAGGDEARTVVSVIETHLTAGDAEVRELITLSFLSSINESPANEVLRLHFGPSLRAEAARRDGWLDD
Ga0182009_108196452	3300021445	Soil	TLVGVLETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD
Ga0207682_102552572	3300025893	Miscanthus Rhizosphere	GLSPVLRPSRRLALHDALLPELFITQVAGWLSGTMHAAGEHTIPGGAGGDAARTLVGVIETHMATGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD
Ga0207705_107149851	3300025909	Corn Rhizosphere	EAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Ga0207649_100986581	3300025920	Corn Rhizosphere	VRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Ga0207649_103334133	3300025920	Corn Rhizosphere	VRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ
Ga0207652_111184632	3300025921	Corn Rhizosphere	SGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD
Ga0207650_111228602	3300025925	Switchgrass Rhizosphere	SGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Ga0207659_109815941	3300025926	Miscanthus Rhizosphere	GDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD
Ga0207644_104506242	3300025931	Switchgrass Rhizosphere	GGNVARTLVEVIETHLTTGDAEVRELIALTFLDSVDAGPANEVLRLHFGPSLRAEVARRDGWSVN
Ga0207644_110326182	3300025931	Switchgrass Rhizosphere	EVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWIES
Ga0207644_118075341	3300025931	Switchgrass Rhizosphere	SGTMHAPGAHTIEGGAGGEAARTLVGVMETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNES
Ga0207709_115346111	3300025935	Miscanthus Rhizosphere	MAQVASWVSGTMHTPGARTIEGGAGGDAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNEQ
Ga0207669_109815062	3300025937	Miscanthus Rhizosphere	AEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWALDD
Ga0207704_116718782	3300025938	Miscanthus Rhizosphere	VGVMETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWNES
Ga0207689_104379312	3300025942	Miscanthus Rhizosphere	MSQVTGWLSGTVCAADGHTVPGGAGGDTARTLVDVIETHLTSGDAEVRELITLSFLDAIDASPANEVLRLHFGPSLRAEAARRDGWALDD
Ga0207689_116292111	3300025942	Miscanthus Rhizosphere	LALHDALLPELFITQVAGWLSGTMHAAGEQTIPGGAAGDAARTLVGVIETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD
Ga0207703_122494811	3300026035	Switchgrass Rhizosphere	PGAHTIEGGAAGEAARTLVAVIETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWIES
Ga0207676_102666423	3300026095	Switchgrass Rhizosphere	THLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Ga0209486_105124972	3300027886	Agricultural Soil	EHLALHDALLPDVFMTQITEWLSGTRYAADAGTIPGGAGGEEARTVVGVIETHLASGDAEVRELISLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWLDG
Ga0268265_112885822	3300028380	Switchgrass Rhizosphere	PEIFMAQVAGWLSGTTRTPGALAIEGGAAGDAARTLVGVFENHLTSGDAEVRELITLSFLGSIDASPANEVLRLHFGPSLRAEAARRDGWVDD
Ga0247828_111309171	3300028587	Soil	SGTVCPSAAHTVPGGAGGDTARTLVDVIETHLTSGDAEVRELITLSFLDAIDASPANEVLRLHFGPSLRAEAARRDGWALDD
Ga0307408_1013566191	3300031548	Rhizosphere	DAARTVVGVIETHLTSGDAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWNYDASALEQSD
Ga0307410_114217481	3300031852	Rhizosphere	AAKTVVGVFENHLTSGDAEVKELITLSFLDSINASPANEVLRLHFGPSLRAEAARRDGWTDD
Ga0307406_100352911	3300031901	Rhizosphere	TIEGGAGGDAARTLVGVIETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWIES
Ga0307406_120008831	3300031901	Rhizosphere	GHTVPGGAAGDAARTLVTVIETHLTSGDAEVRELITLSFLDSVDASPANEVLRLHFGPSLKAEAARRDGWGLDD
Ga0307407_104476881	3300031903	Rhizosphere	LVGVIETHLTSGDAEVRELISLSFLDSIDASPANEVLRLHFGPSLRAEAARRDGWNYDASALEQSD
Ga0308174_104591451	3300031939	Soil	LIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD
Ga0310885_101489981	3300031943	Soil	SWVSGTMQAPGAHTIEGGAGGEAARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Ga0308176_110836002	3300031996	Soil	DAEVRELITLSFLDSIDASPANEVLRLHFGPSLRAEVARRDGWAPRA
Ga0310890_100252446	3300032075	Soil	ARTLVGVIETHLTSGDAEVRELIALSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTE
Ga0307472_1012251681	3300032205	Hardwood Forest Soil	LVGVIETHLTSGDAEVRELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWTES
Ga0310810_100649056	3300033412	Soil	RELISLSFLDSVDASPANEVLRLHFGPSLRAEAARRDGWIES
Ga0310811_107162362	3300033475	Soil	HDALLPELFITQVAGWLSGTMHAAGEHTIPGGAGGDAARTLVGVLETHMASGDAEVQELIALTFLDSVDASPANEVLRLHFGPSLRAEAAKRDGWVAD
Ga0247829_109221131	3300033550	Soil	VPGGAGGDTARTLVDVIETHLTSGDAEVRELITLSFLDAIDASPANEVLRLHFGPSLRAEAARRDGWALDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097284

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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