Metagenome / Metatranscriptome Family F097107

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097107
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	57 residues
Representative Sequence	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Number of Associated Samples	94
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.95 %
% of genes near scaffold ends (potentially truncated)	32.69 %
% of genes from short scaffolds (< 2000 bps)	79.81 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (40.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.192 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.23% β-sheet: 0.00% Coil/Unstructured: 39.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00005	ABC_tran	47.12
PF07730	HisKA_3	13.46
PF00440	TetR_N	6.73
PF01061	ABC2_membrane	3.85
PF13207	AAA_17	0.96
PF01261	AP_endonuc_2	0.96
PF01545	Cation_efflux	0.96
PF12698	ABC2_membrane_3	0.96
PF00507	Oxidored_q4	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	13.46
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	13.46
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	13.46
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	13.46
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.96
COG0838	NADH:ubiquinone oxidoreductase subunit 3 (chain A)	Energy production and conversion [C]	0.96
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.96
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.31 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.31 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.31 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.81 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.92 %
Unclassified	root	N/A	32.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36.54 %
Unclassified	root	N/A	32.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	5.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.92 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	5.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	5.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Rugosimonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora	0.96 %
Labedaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Labedaea	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Nocardia colli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia colli	5.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Streptomyces natalensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces natalensis	0.96 %
Rugosimonospora africana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana	0.96 %
Labedaea rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Labedaea → Labedaea rhizosphaerae	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02FIPSH	Not Available	557	Open in IMG/M
2199352024\|deeps__Contig_109123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	688	Open in IMG/M
2199352025\|deepsgr__Contig_182429	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105626309	Not Available	893	Open in IMG/M
3300005162\|Ga0066814_10029622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	813	Open in IMG/M
3300005171\|Ga0066677_10105690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1496	Open in IMG/M
3300005327\|Ga0070658_10219382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1608	Open in IMG/M
3300005328\|Ga0070676_10127018	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M
3300005340\|Ga0070689_100287004	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300005354\|Ga0070675_100894602	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300005436\|Ga0070713_101643704	Not Available	623	Open in IMG/M
3300005436\|Ga0070713_101793799	Not Available	595	Open in IMG/M
3300005437\|Ga0070710_10596070	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005437\|Ga0070710_11474293	Not Available	510	Open in IMG/M
3300005457\|Ga0070662_100742920	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300005530\|Ga0070679_100139783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2402	Open in IMG/M
3300005560\|Ga0066670_10393912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	848	Open in IMG/M
3300005614\|Ga0068856_101303456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	741	Open in IMG/M
3300005616\|Ga0068852_100179997	All Organisms → cellular organisms → Bacteria	1987	Open in IMG/M
3300005616\|Ga0068852_102166619	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300005764\|Ga0066903_100752963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia colli	1731	Open in IMG/M
3300006028\|Ga0070717_12151890	Not Available	502	Open in IMG/M
3300006755\|Ga0079222_10077051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1665	Open in IMG/M
3300006854\|Ga0075425_101288072	Not Available	829	Open in IMG/M
3300006854\|Ga0075425_102263545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300009092\|Ga0105250_10225867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia colli	795	Open in IMG/M
3300009551\|Ga0105238_13002330	Not Available	507	Open in IMG/M
3300010048\|Ga0126373_10125143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2410	Open in IMG/M
3300010329\|Ga0134111_10440444	Not Available	563	Open in IMG/M
3300010358\|Ga0126370_10237484	Not Available	1404	Open in IMG/M
3300010375\|Ga0105239_10572511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1287	Open in IMG/M
3300010400\|Ga0134122_10285713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1409	Open in IMG/M
3300010401\|Ga0134121_11336998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	724	Open in IMG/M
3300011106\|Ga0151489_1454050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia colli	1068	Open in IMG/M
3300012198\|Ga0137364_11351920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300012201\|Ga0137365_11225658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300012206\|Ga0137380_10825546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	799	Open in IMG/M
3300012491\|Ga0157329_1011548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	709	Open in IMG/M
3300012498\|Ga0157345_1057503	Not Available	510	Open in IMG/M
3300012501\|Ga0157351_1054047	Not Available	536	Open in IMG/M
3300012502\|Ga0157347_1034905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300012515\|Ga0157338_1067847	Not Available	550	Open in IMG/M
3300012910\|Ga0157308_10280224	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012929\|Ga0137404_10399145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300012957\|Ga0164303_10054137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1795	Open in IMG/M
3300012985\|Ga0164308_10164991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1653	Open in IMG/M
3300012986\|Ga0164304_10419148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	956	Open in IMG/M
3300013297\|Ga0157378_10269009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1638	Open in IMG/M
3300013297\|Ga0157378_10430255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia colli	1306	Open in IMG/M
3300014325\|Ga0163163_10212782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1982	Open in IMG/M
3300014326\|Ga0157380_10142420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces natalensis	2061	Open in IMG/M
3300015372\|Ga0132256_102578716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300019877\|Ga0193722_1011936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2217	Open in IMG/M
3300020002\|Ga0193730_1190524	Not Available	509	Open in IMG/M
3300020070\|Ga0206356_10121157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1224	Open in IMG/M
3300020081\|Ga0206354_10550528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	851	Open in IMG/M
3300020082\|Ga0206353_11845281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1193	Open in IMG/M
3300021178\|Ga0210408_10037481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3815	Open in IMG/M
3300021403\|Ga0210397_10021189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3996	Open in IMG/M
3300021404\|Ga0210389_10187923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1609	Open in IMG/M
3300021560\|Ga0126371_10330580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Labedaea → Labedaea rhizosphaerae	1656	Open in IMG/M
3300024323\|Ga0247666_1022776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1335	Open in IMG/M
3300025885\|Ga0207653_10005737	All Organisms → cellular organisms → Bacteria	3870	Open in IMG/M
3300025909\|Ga0207705_10303829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1224	Open in IMG/M
3300025912\|Ga0207707_11079431	Not Available	655	Open in IMG/M
3300025926\|Ga0207659_11672660	Not Available	542	Open in IMG/M
3300025928\|Ga0207700_10133785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2028	Open in IMG/M
3300025936\|Ga0207670_10296820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1264	Open in IMG/M
3300025940\|Ga0207691_10285540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1420	Open in IMG/M
3300025941\|Ga0207711_12027130	Not Available	518	Open in IMG/M
3300026075\|Ga0207708_10177293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1691	Open in IMG/M
3300026075\|Ga0207708_10688673	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300026142\|Ga0207698_12436872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	534	Open in IMG/M
3300026899\|Ga0209326_1003505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia colli	1207	Open in IMG/M
3300026995\|Ga0208761_1009224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana	823	Open in IMG/M
3300027725\|Ga0209178_1171227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	758	Open in IMG/M
3300028807\|Ga0307305_10173249	Not Available	995	Open in IMG/M
3300028819\|Ga0307296_10247240	Not Available	970	Open in IMG/M
3300028824\|Ga0307310_10211176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	920	Open in IMG/M
3300028828\|Ga0307312_11057491	Not Available	537	Open in IMG/M
3300031545\|Ga0318541_10010989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	4072	Open in IMG/M
3300031679\|Ga0318561_10066871	Not Available	1833	Open in IMG/M
3300031716\|Ga0310813_10406222	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300032074\|Ga0308173_11023842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300032174\|Ga0307470_10886723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300032205\|Ga0307472_102532556	Not Available	522	Open in IMG/M
3300032770\|Ga0335085_10354272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia colli	1719	Open in IMG/M
3300032770\|Ga0335085_10417962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1551	Open in IMG/M
3300032770\|Ga0335085_12352782	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300032898\|Ga0335072_10152414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2832	Open in IMG/M
3300032898\|Ga0335072_11678650	Not Available	531	Open in IMG/M
3300033134\|Ga0335073_10435968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1519	Open in IMG/M
3300034818\|Ga0373950_0110547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.04%
Host-Associated	Host-Associated	25.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.04%
Plants	Host-Associated → Plants	25.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.73%
Roots	Host-Associated → Plants → Roots	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.88%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026899	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_02363930	2189573000	Grass Soil	MLLGTLHPAIRLVVGVAVVVIGVAIHKVYLDVIGGAIVALSAFQWMTRQRGFTGSTSLRR
deeps_01942350	2199352024	Soil	MLLGTLHPAIRLVVGSPSWSSAWRCTRCYLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
deepsgr_03122450	2199352025	Soil	MLLGTLHPAIRLVVGVAVVVIGVAMHKVYLDVIGGAVVALSAFQWMTRQRGFTGSKGLRR
INPhiseqgaiiFebDRAFT_1056263092	3300000364	Soil	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWXTRQXGFTGSKGLRX
Ga0066814_100296221	3300005162	Soil	MLLGTLHPAIRLVAGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
Ga0066677_101056901	3300005171	Soil	MLLGTLHPAIRLVVGVAVVVIGVALHKVFLDVIGGAVVVLSAVQWMSRQKGFKGMRR*
Ga0070658_102193823	3300005327	Corn Rhizosphere	LVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ*
Ga0070676_101270181	3300005328	Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGPRR
Ga0070689_1002870042	3300005340	Switchgrass Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRR
Ga0070675_1008946022	3300005354	Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVIVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0070713_1016437041	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSA
Ga0070713_1017937992	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRFVVGVAVVVIGVAVHKVYLDVIGGAVVALSAFQWMTRQRGFTGSKGLRR
Ga0070710_105960702	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLR
Ga0070710_114742931	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVVGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQ
Ga0070662_1007429202	3300005457	Corn Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSALQW
Ga0070679_1001397831	3300005530	Corn Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMT
Ga0066670_103939122	3300005560	Soil	KEDNMLLGTLHPAIRLVVGVAVVVIGVALHKVFLDVIGGAVVVLSAVQWMSRQKGFKGMRR*
Ga0068856_1013034562	3300005614	Corn Rhizosphere	MLLGTVHPAIRLVVGVAVVVVGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRR
Ga0068852_1001799973	3300005616	Corn Rhizosphere	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVIALSAFQWMTRRKGFTGSKGLRR
Ga0068852_1021666191	3300005616	Corn Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQR
Ga0066903_1007529633	3300005764	Tropical Forest Soil	MLLGTLHPAVRLVAGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRGPGR*
Ga0070717_121518901	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLAVGVVIVVIGIAVHKVFLDVIGGAVVALSAFQWMTRQR
Ga0079222_100770512	3300006755	Agricultural Soil	MLLGILHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0075425_1012880722	3300006854	Populus Rhizosphere	MLLGTLHPAIRLAVGVVIVVIGIAVHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0075425_1022635452	3300006854	Populus Rhizosphere	DNMLLGTVHPAIKLVAGVAVVVVGVAMHKVFLDAIGGAVVAIGAFQWMTRQRGFTGSKGLRR*
Ga0105250_102258672	3300009092	Switchgrass Rhizosphere	VAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ*
Ga0105238_130023301	3300009551	Corn Rhizosphere	MLLGTLHPAIRFVVGVAVVVIGVAVHKVYLDVIGGAVVAISAFQWMTRQRGFTGSKGLRR
Ga0126373_101251435	3300010048	Tropical Forest Soil	MLLGTLHPAVRLVVGVVAVVTGVVMRKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRGPGR*
Ga0134111_104404442	3300010329	Grasslands Soil	MLLGTWHPAIRLAVGVVVVVIGITPHKVFLDAAGGVIVAISGYQWMGRQKGPAGPKALRR
Ga0126370_102374843	3300010358	Tropical Forest Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRG
Ga0126378_101170184	3300010361	Tropical Forest Soil	MLLGTLHPALRLVAGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRGPGR*
Ga0105239_105725112	3300010375	Corn Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVVGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0134122_102857132	3300010400	Terrestrial Soil	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWM
Ga0134121_113369982	3300010401	Terrestrial Soil	MLLGTLHPAIRLVAGVVVVVIGVATHKVFLDVIGGAVVALSAFQWMTCQRGFTGSKGLRQ
Ga0151489_14540502	3300011106	Soil	PAIRLVVGVAVVVIGVAVHKVYLDVIGGAVVALSAYQWMTRQKGFTGSKGLRR*
Ga0137364_113519202	3300012198	Vadose Zone Soil	LTAVHLVVGVAVVVIGVAVHKVYLDVIGGAVVALSAFQWITRQKGF
Ga0137365_112256581	3300012201	Vadose Zone Soil	MLLGTLHPAIRLVAGVAVVVIGVAMHKVFLDVIGGAVAVL
Ga0137380_108255462	3300012206	Vadose Zone Soil	MLLGTLHPAIRLVAGVAVVVIGVAMHKVFLDVIGGAVAVLSAVQWTTRQRGFKGLRR*
Ga0157329_10115482	3300012491	Arabidopsis Rhizosphere	AIRLAAGVAVVVIGVAMHKVFLDVIGGAIVALSAFQWMTRQRGVTGSKGLRQ*
Ga0157345_10575032	3300012498	Arabidopsis Rhizosphere	MLLGTLHPAIRLVAGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRHRGFTGSKGLRQ
Ga0157351_10540472	3300012501	Unplanted Soil	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRHRGFTGSKGLRQ
Ga0157347_10349052	3300012502	Arabidopsis Rhizosphere	VVGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRHRGFTGSKGLRQ*
Ga0157338_10678472	3300012515	Arabidopsis Rhizosphere	MLLGTLHPAIRLVAGVAVVVIGVAMHKVFLDVIGG
Ga0157308_102802241	3300012910	Soil	MVLGTVHPAIRLGVGVAVVVVGVAMHKVFLDVIGGAVVALSAFQWIARQKGFTGSKGLRQ
Ga0137404_103991452	3300012929	Vadose Zone Soil	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVVALSAFQWMTRQKGFAGSKGLRR
Ga0164303_100541371	3300012957	Soil	GTLHPAIRLVAGVVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRVFTGSKGLRQ*
Ga0164308_101649912	3300012985	Soil	MLLGTLHPAIRLVAGVVVVVIGVAMHKIFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0164304_104191482	3300012986	Soil	MLLGTLHPAIRLVAGVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ*
Ga0157378_102690092	3300013297	Miscanthus Rhizosphere	MLLGTLHPAIRLVVGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
Ga0157378_104302551	3300013297	Miscanthus Rhizosphere	RAIKGGNMLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ*
Ga0163163_102127822	3300014325	Switchgrass Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKIFLDVIGGAVVALSAFQWMTCQRGFTGSKGLRQ
Ga0157380_101424203	3300014326	Switchgrass Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGTVVALSAFQWMTRQRGFTGSKGLRQ
Ga0132256_1025787161	3300015372	Arabidopsis Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGMAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0182034_104818181	3300016371	Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRR
Ga0193722_10119364	3300019877	Soil	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
Ga0193730_11905242	3300020002	Soil	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVVALSAFQWMTRQKGFTGSRDLRR
Ga0206356_101211572	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTCQRGFTGSKGLRQ
Ga0206354_105505282	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0206353_118452812	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVVGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGPRR
Ga0210408_100374815	3300021178	Soil	MLLGTLHPAIRLVAGVAVVVIGVAMYKVFLDVIGGAVAVLSAVQWTTRQRGFKGLRR
Ga0210397_100211892	3300021403	Soil	MLLGTLHPAIRLVVGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0210389_101879231	3300021404	Soil	MLLGTLHPAIRLVVGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSK
Ga0126371_103305803	3300021560	Tropical Forest Soil	MLLGTLHPAVRLVAGVVAVVTAVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRGPGR
Ga0247666_10227761	3300024323	Soil	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQW
Ga0207653_100057372	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
Ga0207705_103038292	3300025909	Corn Rhizosphere	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVIALSAFQWMTRQKGFTGSKGLRR
Ga0207707_110794311	3300025912	Corn Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSALQWMTCQRG
Ga0207659_116726602	3300025926	Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVIVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
Ga0207700_101337851	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	PAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSALQWMTCQRGFTGSKGLRQ
Ga0207670_102968202	3300025936	Switchgrass Rhizosphere	MLLGTLHPAIRLVAGVIVVVIGAAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0207691_102855402	3300025940	Miscanthus Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWVTRQRGFTGSQGLR
Ga0207711_120271301	3300025941	Switchgrass Rhizosphere	MLLGTLHPAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKCLRQ
Ga0207708_101772931	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	AISLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0207708_106886732	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVIALSAFQWMTRQKGFTGSKGLRQ
Ga0207698_124368722	3300026142	Corn Rhizosphere	PAIRLVAGVVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTWSKGLRQ
Ga0209326_10035052	3300026899	Forest Soil	MKEPSKEDNMLLGTLHPAIRLAVGVVIVVIGIAAHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0208761_10092243	3300026995	Soil	IRLVVDVAVVVIGVAVHKVYLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
Ga0209178_11712272	3300027725	Agricultural Soil	MLLGTLHPAIRLVAGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGVTGSKGLRQ
Ga0307305_101732492	3300028807	Soil	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVVALSAFQWMTRQKGFT
Ga0307296_102472402	3300028819	Soil	MLLGTLHPAIRLVVGVAVVVIGVAVHKVYLDVIGGAVVALSAFQWMTRQKGFTG
Ga0307310_102111762	3300028824	Soil	MLLGTLHPAIRLVVGVAVVVIGVAVHMVYLDVIGGAVVALSAFQWMTRQKGFTGSKGLRR
Ga0307312_110574911	3300028828	Soil	MLLGTLHPAIRLVVGVAVVVIGVAVHMVYLDVIGGAVVALSAFQWMTRQKGFTGSRDLRR
Ga0318534_103603502	3300031544	Soil	MLLGTVHPAVRLVVGVVAVVIGEVMQKVFVDVAGAAVILLSAVQWLSRSRGAAGRGRRGPGR
Ga0318541_100109895	3300031545	Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGATPGRSRRGPGR
Ga0318561_100668714	3300031679	Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGA
Ga0318561_101619913	3300031679	Soil	RLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGATPGRSRRGPGR
Ga0310813_104062222	3300031716	Soil	MLLGTVHPAIRLVVGVAVVVVGVAMHKVFLDVIGGAVVALSAFQWMTRHRGFTGSKGLRQ
Ga0318526_102330142	3300031769	Soil	MLLGTVHPAVRLVVGVVAVVTGEVMQKVFVDVAGAAVILLSAVQWLSRSRGAAGRGRRGPGR
Ga0318508_10073531	3300031780	Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSGRG
Ga0306919_100755763	3300031879	Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRGPGR
Ga0306925_108135302	3300031890	Soil	RLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRGPGR
Ga0318545_100962803	3300032042	Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGATPG
Ga0318533_106036183	3300032059	Soil	MLLGTLHPAVRLVVGVVAVVTGVVMQKVFLDVAGAAVILLSAAQWLSRSRGAT
Ga0308173_110238422	3300032074	Soil	MLLGTLHPAIRLAVGVVIVVIGIAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0307470_108867232	3300032174	Hardwood Forest Soil	MLLGTLHPAIRLVAGIVVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRR
Ga0307472_1025325562	3300032205	Hardwood Forest Soil	MLLGTVHPVIKLIVGVAVVVIGVAMHKVFLDVIGGAVVALSAFQW
Ga0335085_103542722	3300032770	Soil	MLLGTVHPAIRLVAGVAVVVIGVAVHKVFLDVIGAAVVALSAFQWMTGQKGFTGSKGRR
Ga0335085_104179622	3300032770	Soil	MLLGTLHPAIRLVAGVAVVVIGVAVHKVFLDVIGGAVVALSAFQWMTRQKGFTGSKGRR
Ga0335085_123527821	3300032770	Soil	MLLGTLHPAIRLVAGVAVVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRQ
Ga0335072_101524142	3300032898	Soil	MLLGTLHPAIRVAVGAVIVVIGVVMHKMFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRP
Ga0335072_116786502	3300032898	Soil	MLLGTVHPAIKLVAGVVVVVIGVAMHKVFLDVIGGAIVALGAFQWITRQQGWPGSKGLRQ
Ga0335073_104359682	3300033134	Soil	MLLGTLHPAIRLAAGVVIVVIGVAMHKVFLDVIGGAVVALSAFQWMTRQRGFTGSKGLRP
Ga0318519_110368192	3300033290	Soil	MLLGTLHPAIRLVAGVVAVVIGEVMQKVFVDVAGAAVILLSAVQWLSRSRGAAGRGRRGPGR
Ga0373950_0110547_445_600	3300034818	Rhizosphere Soil	IRLVAGVVVVVIGVAMHKIFLDVIGGAVVALSALQWMTCQRGFTGSKGLRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097107

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences