Metagenome Family F097095

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097095
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	95 residues
Representative Sequence	MRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR
Number of Associated Samples	85
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.84 %
% of genes near scaffold ends (potentially truncated)	34.62 %
% of genes from short scaffolds (< 2000 bps)	69.23 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (28.846 % of family members)
Environment Ontology (ENVO)	Unclassified (39.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.654 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 29.84% β-sheet: 4.84% Coil/Unstructured: 65.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00285	Citrate_synt	39.42
PF00296	Bac_luciferase	16.35
PF00330	Aconitase	3.85
PF02775	TPP_enzyme_C	3.85
PF00694	Aconitase_C	3.85
PF02776	TPP_enzyme_N	1.92
PF01593	Amino_oxidase	0.96
PF05193	Peptidase_M16_C	0.96
PF00762	Ferrochelatase	0.96
PF01208	URO-D	0.96
PF00378	ECH_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0372	Citrate synthase	Energy production and conversion [C]	39.42
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	16.35
COG0276	Protoheme ferro-lyase (ferrochelatase)	Coenzyme transport and metabolism [H]	0.96
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	50.00 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	50.00 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	50.00 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	50.00 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	50.00 %
Unclassified	root	N/A	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_105177120	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300003203\|JGI25406J46586_10024234	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300004268\|Ga0066398_10024448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1048	Open in IMG/M
3300005171\|Ga0066677_10003725	All Organisms → cellular organisms → Bacteria	5954	Open in IMG/M
3300005172\|Ga0066683_10030914	All Organisms → cellular organisms → Bacteria	3083	Open in IMG/M
3300005175\|Ga0066673_10020374	All Organisms → cellular organisms → Bacteria	3042	Open in IMG/M
3300005175\|Ga0066673_10022537	All Organisms → cellular organisms → Bacteria	2928	Open in IMG/M
3300005178\|Ga0066688_10135220	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300005184\|Ga0066671_10013142	All Organisms → cellular organisms → Bacteria	3416	Open in IMG/M
3300005184\|Ga0066671_10902093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	560	Open in IMG/M
3300005186\|Ga0066676_10022722	All Organisms → cellular organisms → Bacteria	3303	Open in IMG/M
3300005186\|Ga0066676_10258583	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300005187\|Ga0066675_10081179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2092	Open in IMG/M
3300005332\|Ga0066388_100250899	All Organisms → cellular organisms → Bacteria	2408	Open in IMG/M
3300005332\|Ga0066388_100772534	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300005332\|Ga0066388_102904754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	876	Open in IMG/M
3300005440\|Ga0070705_100027423	All Organisms → cellular organisms → Bacteria	3110	Open in IMG/M
3300005445\|Ga0070708_100163577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2074	Open in IMG/M
3300005445\|Ga0070708_101516422	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300005451\|Ga0066681_10012767	All Organisms → cellular organisms → Bacteria	4137	Open in IMG/M
3300005451\|Ga0066681_10017844	All Organisms → cellular organisms → Bacteria	3589	Open in IMG/M
3300005556\|Ga0066707_10145385	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300005559\|Ga0066700_10833087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300005561\|Ga0066699_10895685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300005566\|Ga0066693_10004478	All Organisms → cellular organisms → Bacteria	3583	Open in IMG/M
3300005566\|Ga0066693_10259578	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300005598\|Ga0066706_10702298	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	803	Open in IMG/M
3300005713\|Ga0066905_100993812	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	739	Open in IMG/M
3300005764\|Ga0066903_105993692	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	637	Open in IMG/M
3300005937\|Ga0081455_10154411	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300006049\|Ga0075417_10046606	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300006049\|Ga0075417_10235477	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	875	Open in IMG/M
3300006755\|Ga0079222_10400124	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	955	Open in IMG/M
3300006755\|Ga0079222_11576156	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300006791\|Ga0066653_10005671	All Organisms → cellular organisms → Bacteria	4048	Open in IMG/M
3300006794\|Ga0066658_10330937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	813	Open in IMG/M
3300006797\|Ga0066659_10335544	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300006844\|Ga0075428_100022489	All Organisms → cellular organisms → Bacteria	6982	Open in IMG/M
3300006845\|Ga0075421_101663534	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	692	Open in IMG/M
3300006846\|Ga0075430_100541197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	960	Open in IMG/M
3300006854\|Ga0075425_101175031	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	872	Open in IMG/M
3300006854\|Ga0075425_102314151	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	597	Open in IMG/M
3300006904\|Ga0075424_101580474	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	695	Open in IMG/M
3300006904\|Ga0075424_102414103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	551	Open in IMG/M
3300006954\|Ga0079219_10042804	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300007255\|Ga0099791_10163933	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300007265\|Ga0099794_10022121	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2897	Open in IMG/M
3300009012\|Ga0066710_102140759	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	820	Open in IMG/M
3300009012\|Ga0066710_103590728	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300009012\|Ga0066710_104829167	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300009100\|Ga0075418_10019832	All Organisms → cellular organisms → Bacteria	7415	Open in IMG/M
3300009156\|Ga0111538_12740715	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300009162\|Ga0075423_11316797	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	772	Open in IMG/M
3300010043\|Ga0126380_11653734	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300010046\|Ga0126384_10023606	All Organisms → cellular organisms → Bacteria	4002	Open in IMG/M
3300010047\|Ga0126382_10057049	All Organisms → cellular organisms → Bacteria	2322	Open in IMG/M
3300010047\|Ga0126382_10571845	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	924	Open in IMG/M
3300010325\|Ga0134064_10022233	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1806	Open in IMG/M
3300010325\|Ga0134064_10209781	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	703	Open in IMG/M
3300010335\|Ga0134063_10339038	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300010337\|Ga0134062_10005149	All Organisms → cellular organisms → Bacteria	4670	Open in IMG/M
3300010359\|Ga0126376_10022478	All Organisms → cellular organisms → Bacteria	4147	Open in IMG/M
3300010359\|Ga0126376_12216648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300010360\|Ga0126372_10545691	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1100	Open in IMG/M
3300011271\|Ga0137393_10184737	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300012202\|Ga0137363_10477557	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300012285\|Ga0137370_10075156	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300012362\|Ga0137361_11148596	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	698	Open in IMG/M
3300012582\|Ga0137358_11080634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	513	Open in IMG/M
3300012685\|Ga0137397_10182334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1560	Open in IMG/M
3300012917\|Ga0137395_10848726	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300012930\|Ga0137407_10654437	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	988	Open in IMG/M
3300012944\|Ga0137410_10669394	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	863	Open in IMG/M
3300015264\|Ga0137403_10191096	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300015357\|Ga0134072_10187033	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	707	Open in IMG/M
3300015371\|Ga0132258_10443042	All Organisms → cellular organisms → Bacteria	3236	Open in IMG/M
3300017654\|Ga0134069_1021768	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300018433\|Ga0066667_10007357	All Organisms → cellular organisms → Bacteria	5016	Open in IMG/M
3300018468\|Ga0066662_12995796	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300020170\|Ga0179594_10193917	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300025910\|Ga0207684_10000931	All Organisms → cellular organisms → Bacteria	33094	Open in IMG/M
3300025922\|Ga0207646_11860638	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300026305\|Ga0209688_1078937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300026312\|Ga0209153_1067630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1296	Open in IMG/M
3300026323\|Ga0209472_1019761	All Organisms → cellular organisms → Bacteria	3235	Open in IMG/M
3300026324\|Ga0209470_1147247	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300026329\|Ga0209375_1008509	All Organisms → cellular organisms → Bacteria	6544	Open in IMG/M
3300026343\|Ga0209159_1001856	All Organisms → cellular organisms → Bacteria	15389	Open in IMG/M
3300026538\|Ga0209056_10402294	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	840	Open in IMG/M
3300026542\|Ga0209805_1220609	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	795	Open in IMG/M
3300026547\|Ga0209156_10007083	All Organisms → cellular organisms → Bacteria	7733	Open in IMG/M
3300026550\|Ga0209474_10019574	All Organisms → cellular organisms → Bacteria	5255	Open in IMG/M
3300026551\|Ga0209648_10033349	All Organisms → cellular organisms → Bacteria	4489	Open in IMG/M
3300027671\|Ga0209588_1062785	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1201	Open in IMG/M
3300027748\|Ga0209689_1164892	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300027873\|Ga0209814_10198186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	867	Open in IMG/M
3300027880\|Ga0209481_10046987	All Organisms → cellular organisms → Bacteria	1992	Open in IMG/M
3300027880\|Ga0209481_10104613	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1370	Open in IMG/M
3300027909\|Ga0209382_10545208	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1271	Open in IMG/M
3300027909\|Ga0209382_11380825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300031716\|Ga0310813_10196200	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300031820\|Ga0307473_10734749	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300032421\|Ga0310812_10080130	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.77%
Host-Associated	Host-Associated	19.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.77%
Plants	Host-Associated → Plants	19.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.35%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	34.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	28.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1051771202	3300000956	Soil	MRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRSGKGDVDRTQNPDRKRR*
JGI25406J46586_100242342	3300003203	Tabebuia Heterophylla Rhizosphere	MRAALVVVSFALLAASPTLAYAGGDARGGKPYKCNPQAECLARASKLQGPAAAAARRDCERMPTSGTCFSPDDTQADRGGRTDRDRSDKRR*
Ga0066398_100244481	3300004268	Tropical Forest Soil	DDSTGVRPLGDNERMRVVSTAVALALIVITPPLAYAANGKPYKCNPQAECLARASKLQGAAAAAARRDCARMPTSGTCFSPDDSQADRSGKSDVDRTQNPDRKRR*
Ga0066677_100037255	3300005171	Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAVAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066683_100309141	3300005172	Soil	MRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066673_100203743	3300005175	Soil	MLIAVALLLVVATPPLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARRDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR*
Ga0066673_100225371	3300005175	Soil	PPLAYAAGREARNDKPYACNPRAECLARAAGLDGPAAAAAKRDCGRMPKSGTCFSPDDTQADRGGRTDVDRADTVERKRR*
Ga0066688_101352202	3300005178	Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARHDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066671_100131423	3300005184	Soil	MRVVLTAVAVALVVATPPLAYAAGREARNGKPYKCNPQAECLARAAGLNGPAAAAGKKDCGRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR*
Ga0066671_109020931	3300005184	Soil	MRAALIAVTLSLVVTAPTLAYAGGGARNGKPYKCNPQAECLARAERLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRAGRTDLDRSDNSDRKRR*
Ga0066676_100227223	3300005186	Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066676_102585832	3300005186	Soil	MRAALIAFAFALVIATPPLAYAAGRDGRNGKPYKCNPQAECLARANKLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRPGRTDLDRADSPDRKRR*
Ga0066675_100811792	3300005187	Soil	MRAALIAAAALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARRDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR*
Ga0066388_1002508993	3300005332	Tropical Forest Soil	MNAMRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGKGDVDRAKNPERKRQ*
Ga0066388_1007725342	3300005332	Tropical Forest Soil	MRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGKGDVDRAQNQDRKRR*
Ga0066388_1029047542	3300005332	Tropical Forest Soil	DESTGVRPFRENDRMRVVWTVVALALVAITPPLAYAADRDARNGKPYKCNPQAECLARASRLQGAAAAAARRDCGRMPTSGTCFSPDDAHADRPTKSDADRTENPDRKRR*
Ga0070705_1000274232	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRAVFIAVVLALVVTTPPLAYAADRNARNGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTAGTCFSPDEAQADRPGKTDVDRAENSDRKRR*
Ga0070708_1001635773	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRAVLTAVAVTLVVAAPPLAYATGREARNGKPYTCNPRAECLARATGLKGPAAAAAKKDCGRMPTSGTCFSPDDTQADRGGRTDVDRADTLERKRR*
Ga0070708_1015164221	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TLTALTLALVVAAPTLAYAGGREPRNGKPYACNPQAECLARAAQLKGPAAAAAQRDCSRMPTAGTCFSPDDTQADRGGRTDFDRTDTADRKRK*
Ga0066681_100127674	3300005451	Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADR
Ga0066681_100178443	3300005451	Soil	MRVVLTAVAVALVVATPPLAYAAGRETRNGKPYKCNPQAECLARAAGLKGPAAAAAKKDCGRMPTSGTCFSPDDTQADRGGRTDVDRADTVERKRR*
Ga0066707_101453852	3300005556	Soil	MRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARHDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066700_108330871	3300005559	Soil	MRAVLTAVALALVVATPPLAYATGREPRNGKPYACNPQAECLGRAAGLKGPAAVAATKDCGRMPTSGTCFSPDDTQADRGGRIDIDRADTLERKRR*
Ga0066699_108956852	3300005561	Soil	MRALLIAVAFVLVVATPPLAYAGGRDARNGKPYKCNPQAECLARASRLEGPAAVAARRDCGRMPTSGTCFSPDDAQADRPGRTDLDRVDTSDRKRR*
Ga0066693_100044782	3300005566	Soil	MRAALIAVALGLVVTAPTLAYADDRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066693_102595781	3300005566	Soil	MTGMLIAVALLLVVATPPLAYAGGRDARNGKPYKCNPQAECLERANRLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRPGRSDLDRAADPSDRKRR*
Ga0066706_107022981	3300005598	Soil	VTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066905_1009938122	3300005713	Tropical Forest Soil	RLNIDHSTGVRPFGDNDRMRAVLIAAALALVVAVPPFAYAAGRDGRSGKPYKCNPQAECLARANQLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRSDTDRKRR*
Ga0066903_1059936921	3300005764	Tropical Forest Soil	MRGVLTVVALALVVVTPPLAYAADRDARNGKPYKCNPQAECLARASRLQGAAAAAARRDCGRMPTSGTCFSPDDAHADRPGKTDVDRTENPDRKRR*
Ga0081455_101544112	3300005937	Tabebuia Heterophylla Rhizosphere	MRAVLIAAALALVVATPPLAYAGSRDARNGKPYKCNPQAECLARASKLQGPAADAARRDCGRMPTSGTCFSPDDTQGDRSGRTDFDRIDSDRKRR*
Ga0075417_100466062	3300006049	Populus Rhizosphere	MRVVLTVVALALVVIAPPLAYAAGRDARNGKPYKCNPQAECLARASRLQGAAAAAARRDCGRMPTSGTCFAPDDTHADRPGKTDAESPDRKRR*
Ga0075417_102354772	3300006049	Populus Rhizosphere	MRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDEAQADRSGKGDVDRAQNPDRKRR*
Ga0079222_104001242	3300006755	Agricultural Soil	VASPVMAYASGRDGRSGQHYACNPQAECLARAATLRGTAGDAARKDCGRMPKQGTCLSSDDTQGDRASGRTDFDRTDSPDRRRR*
Ga0079222_115761561	3300006755	Agricultural Soil	MTVVLAAVALALVLTTPPLAYAAGRDPRGGKGYNCNPQAECLARANRLQGAAAEAARRDCGRMPTSGTCFSPDDTQADRAGRG
Ga0066653_100056713	3300006791	Soil	MRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0066658_103309371	3300006794	Soil	LVVTTPPLAYAAGREARNDKPYACNPRAECLARAAGLDGPAAAAAKKDCSRMPKSGTCFSPDDTQADRGGRTDVDRADTLERKRR*
Ga0066659_103355442	3300006797	Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQA
Ga0075428_1000224896	3300006844	Populus Rhizosphere	MRAALISLALALVLATPPLAYAAGREGKPYKCNPRAECLARASRLQGPAAAAAQRDCARMPTSGTCFSPDDTQGDRSGRTDLDRSNGPDRKRR*
Ga0075421_1016635341	3300006845	Populus Rhizosphere	MRVVSTAVALALIVITPPLAYAANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGKSDVDRAQNSDRKRR*
Ga0075430_1005411973	3300006846	Populus Rhizosphere	RAALISLALALVLATPPLAYAAGREGKPYKCNPRAECLARASRLQGPAAAAAQRDCARMPTSGTCFSPDDTQGDRSGRTDLDRSNGPDRKRR*
Ga0075425_1011750313	3300006854	Populus Rhizosphere	MTVVLAAIALTLLLTTPPLAYADSRDPRSGKAYKCNPQAECLARTSRLQGAAADAARRDCGRMPTSGTCFSPDDTQADRAGRSDFDRVDTPDRNKRR*
Ga0075425_1023141512	3300006854	Populus Rhizosphere	MRAVFVAVVLALVVTTPPLAYAADRNARNGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTAGTCFSPDEAQADRPGKTDVDRAENSDRKRR*
Ga0075424_1015804741	3300006904	Populus Rhizosphere	MRAALIVVILGLVVTAPSLAYAGGRDARNGKPYKCNPQAECLARANQLQGAAADAARRDCGRMPTSGTCFSPDDAQADRAGRTDLDRTDNSDRKRR*
Ga0075424_1024141031	3300006904	Populus Rhizosphere	PRIGDNDRMTVVLAAIALTLLLTTPPLAYADSRDPRSGKAYKCNPQAECLARTSRLQGAAADAARRDCGRMPTSGTCFSPDDTQADRAGRSDFDRVDTPDRNKRR*
Ga0079219_100428043	3300006954	Agricultural Soil	MTVVLAAVALALVLTTPPLAYAAGRDPRGGKGYNCNPQAECLARANRLQGAAADAARRDCGRMPTSGTCFSPDDTQADRAGRGDLDRVDTSDRKRR*
Ga0099791_101639332	3300007255	Vadose Zone Soil	LAYATGREPRNGKPYACNPQAECLARAAGLDAPAAAAAKKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR*
Ga0099794_100221212	3300007265	Vadose Zone Soil	MRAVLTAVALTLVVATPPLAYATGREPRNGKPYACNPQAECLARAAGLDAPTAAAAKKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR*
Ga0066710_1021407592	3300009012	Grasslands Soil	ALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARHDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR
Ga0066710_1035907281	3300009012	Grasslands Soil	MRVVLTAVAVALVVATPPLAYAAGREARNGKPYKCNPQAECLARAAGLNGPAAAAGKKDCGRMPTSGTCFSPDDTQADRGGRTDVDRADTVERKRR
Ga0066710_1048291671	3300009012	Grasslands Soil	MLIAVALLLVVATPPLAYAGGRDARNGKPYKCNPQAECLERANRLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRPGRTDLDRADSPDRKRR
Ga0075418_100198325	3300009100	Populus Rhizosphere	LNIDHSTGVTRFEDNDRMRAALISLALALVLATPPLAYAAGREGKPYKCNPRAECLARASRLQGPAAAAAQRDCARMPTSGTCFSPDDTQGDRSGRTDLDRSNGPDRKRR*
Ga0111538_127407152	3300009156	Populus Rhizosphere	MRVALIVVILGLVVTAPSLAYAGGRDARNGKPYKCNPQAECLARANQLQGAAADAARRDCGRMPTSGTCFSPDDAQADRAGRTDLDRTDNSDRKRR*
Ga0075423_113167973	3300009162	Populus Rhizosphere	DDSTGVPRIGDNDRMTVVLAAIALTLLLTTPPLAYADSRDPRSGKAYKCNPQAECLARTSRLQGAAADAARRDCGRMPTSGTCFSPDDTQADRAGRSDFDRVDTPDRNKRR*
Ga0126380_116537341	3300010043	Tropical Forest Soil	MRAVLVAAALALVVAVPPFAYAAGRDGRSGKPYKCNPQAECLARANQLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADTDRKRR*
Ga0126384_100236061	3300010046	Tropical Forest Soil	MRAVLIAAALALVVATPPLAYAGGRDGRSGKPYKCNPQAECLARANQLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADTDRKRR*
Ga0126382_100570493	3300010047	Tropical Forest Soil	MRAVLIAAALALVVAVPPFAYAAGRDGRSGKPYKCNPQAECLARANQLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADTDRKRR*
Ga0126382_105718452	3300010047	Tropical Forest Soil	MRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGKSDVDRAQNSDRKRR*
Ga0134064_100222331	3300010325	Grasslands Soil	STGVPRFEDNDRMRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARHDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR*
Ga0134064_102097812	3300010325	Grasslands Soil	MRVVLTAVAVVLVVATPPLAYAAGREARNGKPYKCNPQAECRARAAGLDGPAAAASRKDCGRMPTSGTCFSPDDTQADRGGRTDVDRADTVERKRR*
Ga0134063_103390382	3300010335	Grasslands Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRS
Ga0134062_100051495	3300010337	Grasslands Soil	MRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARHDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR*
Ga0126376_100224782	3300010359	Tropical Forest Soil	MRVVSTAVALVLIVITPPLAYANGKPYKCNPQTECLARASKLQGAAAAAARRDCARMPTSGTCFSPDDAQADRSGKSDVDRAQNSDRKRR*
Ga0126376_122166482	3300010359	Tropical Forest Soil	MRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGKGDVDRAKNPERKRQ*
Ga0126372_105456911	3300010360	Tropical Forest Soil	RRWNIDDSTGVRAFRDNDDMRVVLATVALALIVITPPLAYAADRDAKNGKGYSCNPQAECLARANKLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGKGNVDRTQNPDRKKR*
Ga0137393_101847372	3300011271	Vadose Zone Soil	MRAVLTAVALTLVVATPPLAYATGREPRNGKPYACNPQAECLARAAGLDAPTAAAATKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR*
Ga0137363_104775572	3300012202	Vadose Zone Soil	MRAVLTAVALALVVATPPLAYATGREPRNGKPYACNPQAECLARAAGLDAPTAAAAKKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR*
Ga0137370_100751563	3300012285	Vadose Zone Soil	MRALLIAVAFVLVVATPPLAYAGGRDARNGKPYKCNPQAECLARASRLEGPAAVAARRDCGRMPTSGTCFSPDDAQADRPGRTDLDRLDTSDRKRR*
Ga0137361_111485961	3300012362	Vadose Zone Soil	MRAVLTAVALALVVATPPLAYATGREPRNGKPYACNPQAECLGRAAGLKGPAAAAAKKDCGRMPTSGTCFSPDDTQADRGGRIDIDRADTLERKRR*
Ga0137358_110806341	3300012582	Vadose Zone Soil	AVALTLVVATPPLAYATGREPRNGKPYACNPQAECLARAAGLDAPTAAAAKKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKGR*
Ga0137397_101823342	3300012685	Vadose Zone Soil	MRAVLTAVALTLVVATPPLAYATGREPRNGKPYACNPQAECLARAAGLDAPTAAAAKKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKGR*
Ga0137395_108487261	3300012917	Vadose Zone Soil	MRAVLTAVALALVVATPPLAYATGREPRNGKPYACNPQAECLGRAAGLKGPAAAAAKKDCGRMPTSGTCFSPDDTQADRGGRIDI
Ga0137407_106544372	3300012930	Vadose Zone Soil	ISITRPASDLFEDNDRMRAALIGVAFALVIATPPLAYAAGRDGRNGKPYKCNPQAECLARANKLQSPAAAAARRDCGRMPTSGTCFSPDDAQADRPGRTDLDRADSPDRKRR*
Ga0137410_106693941	3300012944	Vadose Zone Soil	VALALVVAAPPLAYAAGREPRNGKPYACNPQAECLARAAGLKGPAAATAKKDCGRMPTRGTCFSPDDTQADRSGRTDVDRADTSERKRR*
Ga0137403_101910961	3300015264	Vadose Zone Soil	VALALVVATPPLAYAASREPRNGKPYACNPRAECLARAAGLKGPAAAAAKKDCGRMPTQGTCFSPDDTQADRGGRTDFDRADDNDRKRR*
Ga0134072_101870332	3300015357	Grasslands Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQAAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR*
Ga0132258_104430422	3300015371	Arabidopsis Rhizosphere	LNIDHSTGVTRFEDNDRMTAVLVAVALMLIVATPPLAYAGGRDGGNGKPYTCNPQAECLARAKKLQGPAAEAARRDCSRMPTSGTCFSPDDTQADRPGRTDVGREPDRKRR*
Ga0134069_10217682	3300017654	Grasslands Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAADAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR
Ga0066667_100073573	3300018433	Grasslands Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAADAARRDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR
Ga0066662_129957961	3300018468	Grasslands Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR
Ga0179594_101939171	3300020170	Vadose Zone Soil	LAYAAGREARNDKPYACNPRAECLARAAGLDAPAAAAAKKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR
Ga0207684_1000093114	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRAVFIAVVLALVVTTPPLAYAADRNARNGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTAGTCFSPDEAQADRPGKTDVDRAENSDRKRR
Ga0207646_118606381	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ARVCGDRVPDFWRPGAKLARTAPEYDRSTGVRPFEDNERMRAVLTAVAVTLVVAAPPLAYATGREARNGKPYTCNPRAECLARATGLKGPAAAAAKKDCGRMPTSGTCFSPDDTQADRGGRTDVDRADTFERKRR
Ga0209688_10789371	3300026305	Soil	MRAALIAVALGLVVTAPTLAYADDRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDR
Ga0209153_10676301	3300026312	Soil	VRRFEDNDRMRAALIAVALGLVVTAPTLAYADDRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR
Ga0209472_10197613	3300026323	Soil	MRVVLTAVAVALVVATPPLAYAAGRETRNGKPYKCNPQAECLARAAGLKGPAAAAAKKDCGRMPTSGTCFSPDDTQADRGGRTDVDRADTVERKRR
Ga0209470_11472472	3300026324	Soil	MRAALIAFAFALVIATPPLAYAAGRDGRNGKPYKCNPQAECLARANKLQGPAAAAARRDCGRMPTSGTCFSPDDAQADRPGRTDLDRADSPDRKRR
Ga0209375_10085092	3300026329	Soil	MRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARHDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR
Ga0209159_10018565	3300026343	Soil	MRAALIAVALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR
Ga0209056_104022942	3300026538	Soil	AWANIDQSTGVPRFEDNDRMRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGRTDLDRADNSDRKRR
Ga0209805_12206092	3300026542	Soil	MRAALIAVALGLVVTAPTLAYADGRDARNGKPYKCNPQAECLARANRLQGAAAAAARRDCGRMPTSGTCFSPDDAQVDRSGRTDLDRADNSDRKRR
Ga0209156_100070835	3300026547	Soil	MRAALIAAAALGLVVTAPTLAYAGGRDARNGKPYKCNPQAECLARANRLQGAAADAARRDCGRMPTSGTCFSPDDAQADRTGRTDLDRADNSDRKRR
Ga0209474_100195741	3300026550	Soil	TTPPLAYAAGREARNDKPYACNPRAECLARAARLDGPAAAAAKRDCGRMPKSGTCFSPDDTQADRGGRTDVDRAGTVERKRR
Ga0209648_100333493	3300026551	Grasslands Soil	MRAVLTAVALTLVVATPPLAYATGREPRNGKPYACNPQAECLARAAGLDAPTAAAAKKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR
Ga0209588_10627851	3300027671	Vadose Zone Soil	MRAVLTAVALTLVVATPPLAYATGREPRNGKPYACNPQAECLARAAGLDAPTAAAATKDCRRMPTSGTCFSPDDTQADRGGRTDVDRAGTVERKRR
Ga0209689_11648922	3300027748	Soil	MRAVLTAVALALVVATPPLAYATGREPRNGKPYACNPQAECLGRAAGLKGPAAVAATKDCGRMPTSGTCFSPDDTQADRGGRIDIDRADTLERKRR
Ga0209814_101981861	3300027873	Populus Rhizosphere	MRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDEAQADRSGKGDVDRAQNPDRKRR
Ga0209481_100469872	3300027880	Populus Rhizosphere	MRAALISLALALVLATPPLAYAAGREGKPYKCNPRAECLARASRLQGPAAAAAQRDCARMPTSGTCFSPDDTQGDRSGRTDLDRSNGPDRKRR
Ga0209481_101046132	3300027880	Populus Rhizosphere	MRVVLTVVALALVVIAPPLAYAAGRDARNGKPYKCNPQAECLARASRLQGAAAAAARRDCGRMPTSGTCFAPDDTHADRPGKTDAESPDRKRR
Ga0209382_105452081	3300027909	Populus Rhizosphere	MRVVSTAVALALIVITPPLAYANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDEAQADRSGKGDVDRAQN
Ga0209382_113808252	3300027909	Populus Rhizosphere	MRVVSTAVALALIVITPPLAYAANGKPYKCNPQAECLARASKLQGAAAAAARRDCGRMPTSGTCFSPDDAQADRSGKSDVDRAQNSDRKRR
Ga0310813_101962002	3300031716	Soil	MTAALVAVALMLIVATPPLAYAGGRDGGNGKPYTCNPQAECLARAKKLQGPAAEAARRDCNRMPTSGTCFSPDDTQADRPGRTDVGREPDRKRR
Ga0307473_107347491	3300031820	Hardwood Forest Soil	LVTTPPLAYAADRDARNGKPYKCNPQAECLARASTLQGAAAAAARRDCGRMPTSGTCFSPENAQADRSGKTDLDRVDTSDRKRR
Ga0310812_100801302	3300032421	Soil	MTAALVAVALMLIVATPPLAYAGGRDGGNGKPYTCNPQAECLARAKKLQGPAAEAARRDCNRMPTSGTCFSPDDTQAD
Ga0364940_0004255_500_802	3300034164	Sediment	VDNTRVNALLAVALALVVITPAPASASGRDLGGGKPYVCNPQAECLARATRLQGSAAEAARRDCARMPTAGTCFAPDDTPADRGPRLDFNRPESPDRPRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097095

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences