Metagenome / Metatranscriptome Family F097048

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F097048
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	42 residues
Representative Sequence	MLVIGADHVAAATGADAILLLAIPVLWIIGVIVFVALKFHSR
Number of Associated Samples	80
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	18.27 %
% of genes from short scaffolds (< 2000 bps)	78.85 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (92.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.961 % of family members)
Environment Ontology (ENVO)	Unclassified (35.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.269 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.57% β-sheet: 0.00% Coil/Unstructured: 51.43%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF03741	TerC	58.65
PF01425	Amidase	16.35
PF01381	HTH_3	7.69
PF13560	HTH_31	2.88
PF11528	DUF3224	1.92
PF13482	RNase_H_2	1.92
PF09369	MZB	0.96
PF06824	Glyco_hydro_125	0.96
PF05163	DinB	0.96
PF00583	Acetyltransf_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0861	Tellurite resistance membrane protein TerC	Inorganic ion transport and metabolism [P]	58.65
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	16.35
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG3538	Meiotically up-regulated gene 157 (Mug157) protein (function unknown)	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	69.23 %
Unclassified	root	N/A	7.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	66.35 %
Unclassified	root	N/A	7.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	59.62 %
Unclassified	root	N/A	7.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	59.62 %
Unclassified	root	N/A	7.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_2468490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1045	Open in IMG/M
3300004643\|Ga0062591_100948947	Not Available	812	Open in IMG/M
3300005172\|Ga0066683_10078988	All Organisms → cellular organisms → Bacteria	1980	Open in IMG/M
3300005172\|Ga0066683_10435795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	805	Open in IMG/M
3300005172\|Ga0066683_10717644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	590	Open in IMG/M
3300005174\|Ga0066680_10007742	All Organisms → cellular organisms → Bacteria	5338	Open in IMG/M
3300005176\|Ga0066679_10189105	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300005186\|Ga0066676_10415987	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300005338\|Ga0068868_101684666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	597	Open in IMG/M
3300005339\|Ga0070660_101054970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	687	Open in IMG/M
3300005440\|Ga0070705_101104177	Not Available	649	Open in IMG/M
3300005445\|Ga0070708_100031456	All Organisms → cellular organisms → Bacteria	4593	Open in IMG/M
3300005445\|Ga0070708_100409680	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300005446\|Ga0066686_10278117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1134	Open in IMG/M
3300005447\|Ga0066689_10515381	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005450\|Ga0066682_10881108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	535	Open in IMG/M
3300005467\|Ga0070706_100181369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1966	Open in IMG/M
3300005467\|Ga0070706_100861658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	837	Open in IMG/M
3300005468\|Ga0070707_100029250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5246	Open in IMG/M
3300005471\|Ga0070698_100974950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	794	Open in IMG/M
3300005518\|Ga0070699_100611482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	994	Open in IMG/M
3300005536\|Ga0070697_100184661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1768	Open in IMG/M
3300005536\|Ga0070697_100547242	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300005553\|Ga0066695_10382465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	877	Open in IMG/M
3300005561\|Ga0066699_10440683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	932	Open in IMG/M
3300005568\|Ga0066703_10023724	All Organisms → cellular organisms → Bacteria	3206	Open in IMG/M
3300005574\|Ga0066694_10389249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	657	Open in IMG/M
3300005578\|Ga0068854_101013406	Not Available	736	Open in IMG/M
3300006791\|Ga0066653_10343321	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300006791\|Ga0066653_10563053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	577	Open in IMG/M
3300006797\|Ga0066659_11265249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	615	Open in IMG/M
3300006854\|Ga0075425_100762613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1110	Open in IMG/M
3300006904\|Ga0075424_101064443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	862	Open in IMG/M
3300007258\|Ga0099793_10264299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	832	Open in IMG/M
3300007258\|Ga0099793_10296959	Not Available	784	Open in IMG/M
3300007258\|Ga0099793_10376982	Not Available	695	Open in IMG/M
3300009012\|Ga0066710_100053179	All Organisms → cellular organisms → Bacteria	5034	Open in IMG/M
3300009012\|Ga0066710_101847279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	909	Open in IMG/M
3300009012\|Ga0066710_102158807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	815	Open in IMG/M
3300009090\|Ga0099827_10062591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2843	Open in IMG/M
3300009090\|Ga0099827_11233406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	650	Open in IMG/M
3300009137\|Ga0066709_100056444	All Organisms → cellular organisms → Bacteria → Proteobacteria	4486	Open in IMG/M
3300009137\|Ga0066709_100394458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1918	Open in IMG/M
3300009137\|Ga0066709_101729689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	884	Open in IMG/M
3300009137\|Ga0066709_102731882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	657	Open in IMG/M
3300010333\|Ga0134080_10448678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	604	Open in IMG/M
3300010335\|Ga0134063_10189815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	964	Open in IMG/M
3300010335\|Ga0134063_10243758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	854	Open in IMG/M
3300010371\|Ga0134125_11377347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	769	Open in IMG/M
3300010373\|Ga0134128_11370546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	779	Open in IMG/M
3300011270\|Ga0137391_11028016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	670	Open in IMG/M
3300012198\|Ga0137364_11116013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	593	Open in IMG/M
3300012203\|Ga0137399_10133653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1963	Open in IMG/M
3300012206\|Ga0137380_10178593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1931	Open in IMG/M
3300012207\|Ga0137381_10531082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1026	Open in IMG/M
3300012211\|Ga0137377_11064856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	739	Open in IMG/M
3300012211\|Ga0137377_11433463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	618	Open in IMG/M
3300012360\|Ga0137375_10924204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	691	Open in IMG/M
3300012363\|Ga0137390_10355829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1445	Open in IMG/M
3300012685\|Ga0137397_10040020	All Organisms → cellular organisms → Bacteria	3352	Open in IMG/M
3300012685\|Ga0137397_10611573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	811	Open in IMG/M
3300012918\|Ga0137396_10458233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	945	Open in IMG/M
3300012922\|Ga0137394_10317379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1331	Open in IMG/M
3300012922\|Ga0137394_10807075	Not Available	786	Open in IMG/M
3300012922\|Ga0137394_10823466	Not Available	777	Open in IMG/M
3300012925\|Ga0137419_10042300	All Organisms → cellular organisms → Bacteria	2883	Open in IMG/M
3300012927\|Ga0137416_10212912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1558	Open in IMG/M
3300012944\|Ga0137410_10046919	All Organisms → cellular organisms → Bacteria	3066	Open in IMG/M
3300012977\|Ga0134087_10232635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	838	Open in IMG/M
3300015245\|Ga0137409_10056758	All Organisms → cellular organisms → Bacteria	3698	Open in IMG/M
3300015245\|Ga0137409_10828028	Not Available	761	Open in IMG/M
3300017657\|Ga0134074_1159145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	792	Open in IMG/M
3300017657\|Ga0134074_1354726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300018027\|Ga0184605_10001960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6825	Open in IMG/M
3300018027\|Ga0184605_10013490	All Organisms → cellular organisms → Bacteria	3178	Open in IMG/M
3300018028\|Ga0184608_10001555	All Organisms → cellular organisms → Bacteria	6736	Open in IMG/M
3300018028\|Ga0184608_10478405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	534	Open in IMG/M
3300018054\|Ga0184621_10324795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300018071\|Ga0184618_10075433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1279	Open in IMG/M
3300018431\|Ga0066655_10450918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	849	Open in IMG/M
3300018433\|Ga0066667_10025209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3246	Open in IMG/M
3300019255\|Ga0184643_1074822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	522	Open in IMG/M
3300019879\|Ga0193723_1022943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1905	Open in IMG/M
3300020006\|Ga0193735_1182553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	516	Open in IMG/M
3300020015\|Ga0193734_1054413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	730	Open in IMG/M
3300021080\|Ga0210382_10009664	All Organisms → cellular organisms → Bacteria	3245	Open in IMG/M
3300022756\|Ga0222622_10245698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1210	Open in IMG/M
3300023058\|Ga0193714_1002773	All Organisms → cellular organisms → Bacteria	2884	Open in IMG/M
3300025910\|Ga0207684_10180858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1818	Open in IMG/M
3300025910\|Ga0207684_10735446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	837	Open in IMG/M
3300026301\|Ga0209238_1175277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	632	Open in IMG/M
3300026310\|Ga0209239_1245809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	618	Open in IMG/M
3300026313\|Ga0209761_1143287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1135	Open in IMG/M
3300026332\|Ga0209803_1017251	All Organisms → cellular organisms → Bacteria	3638	Open in IMG/M
3300026523\|Ga0209808_1030554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2595	Open in IMG/M
3300026536\|Ga0209058_1031349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3278	Open in IMG/M
3300027882\|Ga0209590_10392061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	896	Open in IMG/M
3300028536\|Ga0137415_10110625	All Organisms → cellular organisms → Bacteria	2595	Open in IMG/M
3300028796\|Ga0307287_10083634	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300028811\|Ga0307292_10293608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	680	Open in IMG/M
3300028814\|Ga0307302_10332741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	748	Open in IMG/M
3300028828\|Ga0307312_10813184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	619	Open in IMG/M
3300028881\|Ga0307277_10001783	All Organisms → cellular organisms → Bacteria	8342	Open in IMG/M
3300031720\|Ga0307469_10148449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1751	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.23%
Host-Associated	Host-Associated	5.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.58%
Aquatic	Environmental → Aquatic	8.65%
Plants	Host-Associated → Plants	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.58%
Sediment	Environmental → Aquatic → Sediment	6.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Freshwater	Environmental → Aquatic → Freshwater	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.04%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0779.00000620	2162886012	Miscanthus Rhizosphere	MLVIGADHVAAAAGPDAIALLLVPLLWILGVIVFVAFKLHFR
Ga0062591_1009489472	3300004643	Soil	MLVIGTDHVAAAAGSDAILLLAIPVLWVVGVIVFVAFKFHSR*
Ga0066683_100789883	3300005172	Soil	MLMIGADHVAAAAGADAILFLAIPVIWIIGVIVFVAFKLHSR*
Ga0066683_104357951	3300005172	Soil	MLVMGADHVAAAAGGEAILILAMPVLWILGVIAFVALKLRSR*
Ga0066683_107176441	3300005172	Soil	MLVMGADHVVAAAGDEAILILAMPVLWILGVIVSVALKLRSR*
Ga0066680_100077425	3300005174	Soil	MLVIGTDHVVAAAGDEAILILAIPVLWILGVIVSVALKLRSR*
Ga0066679_101891052	3300005176	Soil	MLVIGTDHVVAAAGDEAILILAIPVLWILGAIVSVAVQLRSR*
Ga0066676_104159871	3300005186	Soil	MLMIGADHVAAAAGADAILFLAIPVIWIIGVIVFVAFKFHSR*
Ga0068868_1016846661	3300005338	Miscanthus Rhizosphere	MLVMGADHVAAAAGPDAIALLLVPLLWILGVIVFVAFKLHSR*
Ga0070660_1010549701	3300005339	Corn Rhizosphere	MLVIGADHVAAAAGPDAIALLLVPLLWILGVIVFVAFKLHSR*
Ga0070705_1011041772	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MGADHVAAAAGPDAIALLLVPLLWILGVIVFVAFKLHSR*
Ga0070708_1000314563	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPAIGADHVAAASGGDAILLLAIPVLWMIGVVVFVAFKFHSR*
Ga0070708_1004096802	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLVIGADHVAAAAGVDAIVLLAIPVLWVVGVVVFVAFKLRAR*
Ga0066686_102781173	3300005446	Soil	MLMMGADHVAAAAGGEAILILAIPVLWILGVIAFVALKLRSR*
Ga0066689_105153812	3300005447	Soil	MMLVMAADHVAAAVGGDALFLLAIPVLWLIGVVLLIAFKFRSR*
Ga0066682_108811081	3300005450	Soil	MLMIGADHVAAAAGADAILFLAIPVIWIIGVIVIVAFKFHSR*
Ga0070706_1001813693	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAVIGADHVSAAAGGDALLLLAIPVLWIIGVVVLVAFKFRSR*
Ga0070706_1008616582	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLVIGADHIAAASGGDAILLLAIPVLWMIGVIVFVAFKFHSR*
Ga0070707_1000292505	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLVIGADHVAAAAGVDAIVLLAIPVLWVVGVIVFVAFKLRAR*
Ga0070698_1009749501	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	IGADHVAAAAGVDAIVLLAIPVLWVVGVVVFVAFKLRAR*
Ga0070699_1006114821	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLLIGADHVASAAGADAIVLLAIPVLWMVGVVLFVAFKFHRR*
Ga0070697_1001846613	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPAIGADHIAAASGGDAILLLAIPVLWMIGVVVFVAFKFHSR*
Ga0070697_1005472423	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLAMGADHIAAAAGGDAILILAMPVLWMLGVILFVVLKLRSHQR*
Ga0066695_103824652	3300005553	Soil	MLVIGADHVAAATGADAILLLAIPVLWIIGVIVFVALKFHSR*
Ga0066699_104406832	3300005561	Soil	MLVIGTDHVVAAAGDEAILILAMPVLWILGVIVSVALKLRSR*
Ga0066703_100237244	3300005568	Soil	MLVIGADHVAASAGGDALLLLAIPVLWIIGVVILVAFKFRAR*
Ga0066694_103892491	3300005574	Soil	MLVMGADHVAAAAGGEAILILAIPVLWILGVIVFVALKLRSR*
Ga0068854_1010134061	3300005578	Corn Rhizosphere	IGADHVAAAAGGDAMALLLVPLLWMLGVIVFVAFKLHSR*
Ga0066653_103433212	3300006791	Soil	MLVIGADHVAAATGADAILLLAIPVLWIIGVIVVVALKFHSR*
Ga0066653_105630532	3300006791	Soil	MLVIGTDHVVAAAGDEAILILAIPVLWILGVIAFVALKLRSR*
Ga0066659_112652492	3300006797	Soil	GADHVVAAAGDEAILILAMPVLWILGVIVSVALKLRSR*
Ga0075425_1007626133	3300006854	Populus Rhizosphere	VLVIGADHVTTAGGADAAFLLAIPALWLVGVILVVVYKYRSR*
Ga0075424_1010644432	3300006904	Populus Rhizosphere	HVPAAVGLDGIVVLAVPVLWVVGVIVFVAFKLRAR*
Ga0099793_102642993	3300007258	Vadose Zone Soil	MGTDHVAAAAGADAVLLLAFPVLWIIGVIVFVAFKFSR*
Ga0099793_102969592	3300007258	Vadose Zone Soil	MVDADHVAAAAGGDASLFLAIPALWIVGVIVLVALKFHSR*
Ga0099793_103769821	3300007258	Vadose Zone Soil	MLVIGVDHAAPAADGDALLLLAIPVLWIVGVVVLVAFKFRSR*
Ga0066710_1000531793	3300009012	Grasslands Soil	MLVMGADHVAAATGGEAVLILAMPVLWILGVIVFVAIKLRSR
Ga0066710_1018472792	3300009012	Grasslands Soil	VIGADHVAAAAGADAILFLAIAALWIVGVVIFVAFKLHSR
Ga0066710_1021588072	3300009012	Grasslands Soil	IGADHVAAAGGADAILFLAIPVIWIIGVIVFVAFKFHSR
Ga0099827_100625913	3300009090	Vadose Zone Soil	MLLIGADHVAAAAGGDAMLFLAIPVLWIIGVIVFVAFKFRSR*
Ga0099827_112334062	3300009090	Vadose Zone Soil	MLVMGTDHVTAASGSEAMLLVATPLLWIVGVIVFVAFKLRSR*
Ga0066709_1000564445	3300009137	Grasslands Soil	MLVMGADHVAAATGGEAVLILAMPVLWILGVIVFVAIKLRSR*
Ga0066709_1003944583	3300009137	Grasslands Soil	MMGADHVAAAAGGEAILILAIPVLWILGVIAFVALKLRSR*
Ga0066709_1017296892	3300009137	Grasslands Soil	MLVVGADHVAAAVGGDAILLLAIPVTWIIGVIVFVAFKFHSR*
Ga0066709_1027318822	3300009137	Grasslands Soil	MLVIGADHVAAAAGADAILFLAIAALWIVGVVVFVAFKLHSR*
Ga0134080_104486782	3300010333	Grasslands Soil	MLMIGADHVTAAAGADAILFLAIPVIWIIGVIVIVAFKFHSR*
Ga0134063_101898153	3300010335	Grasslands Soil	MLVMGADDVVAAAGDEAILILAIQVLWILGVIVFVALKLRSR*
Ga0134063_102437581	3300010335	Grasslands Soil	HVVAAAGDEAILILAIPVLWILGVIVSVALKLRSR*
Ga0134125_113773472	3300010371	Terrestrial Soil	MLVMGADHVAAAAGGDAITLLLVPLLWMLGVIVFVAFKLHSR*
Ga0134128_113705462	3300010373	Terrestrial Soil	MLVIGADHVAAAAGPDAIALLLVPLLWILGVIVFVAFKLHFR*
Ga0137391_110280162	3300011270	Vadose Zone Soil	MLVIGPDHVAAAAGADAVVLLAIPVVWVVGVIVFVAFKLRAR*
Ga0137364_111160131	3300012198	Vadose Zone Soil	MLVIGADHVASATGADAILLLAIPVLWIIGVIVFVALKFHSR*
Ga0137399_101336532	3300012203	Vadose Zone Soil	MVDADHVAAAAGGEVLLLLAIPALWIVGVIVLVALKFHSR*
Ga0137380_101785931	3300012206	Vadose Zone Soil	DAMLVIGADHVAAVGGVDAILLLAIPVLWVVGVVVCVAFKLRAR*
Ga0137381_105310823	3300012207	Vadose Zone Soil	MLVIGPDHVASAAGADAIVLLAIPVLWIVGVVLFVVFKFHRR*
Ga0137377_110648562	3300012211	Vadose Zone Soil	MLVIGADHVAAAGGADAILFLAIPVIWIIGVIVFVAFKFHSR*
Ga0137377_114334632	3300012211	Vadose Zone Soil	MLVMGADHVAAAAGGEAILILAIPVLWILGVIAFVALKLRSR*
Ga0137375_109242042	3300012360	Vadose Zone Soil	MLVISADHVAAVAGSDAILFLAIPVLWIAGVVLLIAFKFRSR*
Ga0137390_103558292	3300012363	Vadose Zone Soil	MLVIGADHVAAAAGVDAIVLLAIPVLWVVGVIVFVAFKLRTR*
Ga0137397_100400201	3300012685	Vadose Zone Soil	MFVIGADHVATAIGADAVLLLAIPVLWIIGVIVFVVFKLHSR*
Ga0137397_106115732	3300012685	Vadose Zone Soil	MLVIGADHVAAATGADAVLLLAIPVLWMIGVIVIVAFKFLSR*
Ga0137396_104582332	3300012918	Vadose Zone Soil	MLVIGTDHVAAATGADAVLLLAIPVLWIIGVVILVAFKFHAR*
Ga0137394_103173792	3300012922	Vadose Zone Soil	MLVIGADHVAAAAGGDALLLLAVPVLWIIGVVILVAIKFHAR*
Ga0137394_108070752	3300012922	Vadose Zone Soil	MFVIGADHVATAIGADAVLLLAIPVLWMIGVIVLVAFKLHSR*
Ga0137394_108234662	3300012922	Vadose Zone Soil	MLVIGADHIAAASGGDAILFLVIPVLWMIGVIVFVAFKFHSR*
Ga0137419_100423005	3300012925	Vadose Zone Soil	MLVIGTDHVAAAAGADAVLLLAIPVLWIIGVIVFVAFKFHSR*
Ga0137416_102129123	3300012927	Vadose Zone Soil	MLVIGTDHVAAAAGADAVLLLAIPVLWIIGVIVFVAFKFSR*
Ga0137410_100469195	3300012944	Vadose Zone Soil	MLVIGADHVATAIGADAILLLAIPVLWIIGVIVFVAFKFSR*
Ga0134087_102326352	3300012977	Grasslands Soil	MLVIGTDHVVAAAGDEAILILAIPVLWILGVICSVALKLRSR*
Ga0137409_100567585	3300015245	Vadose Zone Soil	MLVISADHVAAATGADVVLLLAIPVLWIIGVIVFVAFKFSR*
Ga0137409_108280281	3300015245	Vadose Zone Soil	TMLSIAADHVAAAAGGDALLLAIPVLWIIGVVILVAFKFRSR*
Ga0134074_11591452	3300017657	Grasslands Soil	MLVIGTDHVVAAAGDEAILILAMPVLWILGVIAFVALKLRSR
Ga0134074_13547261	3300017657	Grasslands Soil	MLMIGADHVAAAAGADAILFLAIPVIWIIGVIVIVAFKFHSR
Ga0184605_100019604	3300018027	Groundwater Sediment	MFMIGADHVAAATGADAILLLAIPVLWIIGVIVFVAFKFHSR
Ga0184605_100134905	3300018027	Groundwater Sediment	MLVIGADHVATAIGGDAILFLAIPVLWMIGIIVLVAFKFHSR
Ga0184608_100015555	3300018028	Groundwater Sediment	MLVIGADHVATAIGGDAILFLAIPVLWMIGVIVLVAFKFHSR
Ga0184608_104784051	3300018028	Groundwater Sediment	MFVIGADHVAAASGNDAILFLAIPVLWIIGVIVFVAFKFRTR
Ga0184621_103247952	3300018054	Groundwater Sediment	MLVIGADHVATAIGGDAILLLAIPVLWMIGVIVLVAFKFHSR
Ga0184618_100754333	3300018071	Groundwater Sediment	MFMIGADHVAAATGADAILLLAIPVLWIIGVIVFVAFKFR
Ga0066655_104509182	3300018431	Grasslands Soil	MLVMGADHVVAAAGDEAILILAMPVLWILGVIVSVALKLRSR
Ga0066667_100252093	3300018433	Grasslands Soil	MLVIGTDHVVAAAGDEAILILAIPVLWILGVIVSVALKLRSR
Ga0184643_10748222	3300019255	Groundwater Sediment	MGADHVATAIGGDAILFLAIPVLWMIGVIVLVAFKFHSR
Ga0193723_10229432	3300019879	Soil	MLVIGADHVAAVAGTDAIVLLAIPLLWIAGVIAFVAFKLRSR
Ga0193735_11825532	3300020006	Soil	MLVIGADHVAAVAGTDAIVLLAIPLLWIAGVIGFV
Ga0193734_10544131	3300020015	Soil	ADHVAAVTGGDAMLLLAIPVAWILGVIVFVAVKLHSR
Ga0210382_100096642	3300021080	Groundwater Sediment	MLVMGADHVATAIGGDAILFLAIPVLWMIGVIVLVAFKFHSR
Ga0222622_102456982	3300022756	Groundwater Sediment	MLVIGADHVAAASGNDAILFLAIPVLWIIGVIVFVAFKFRTR
Ga0193714_10027734	3300023058	Soil	MLVIGADHIAAAAGGDAIALLLVPVLWILGVIVFVALKLHSR
Ga0207684_101808583	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPAIGADHVAAASGGDAILLLAIPVLWMIGVVVFVAFKFHSR
Ga0207684_107354462	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLVIGADHIAAASGGDAILLLAIPVLWMIGVIVFVAFKFHSR
Ga0209238_11752771	3300026301	Grasslands Soil	MLVIGADHVAASAGGDALLLLAIPVLWIIGVVILVAFKFRAR
Ga0209239_12458092	3300026310	Grasslands Soil	MLVMGADHVAAAAGGEAILILAMPVLWILGVIAFVALKLRSR
Ga0209761_11432872	3300026313	Grasslands Soil	MLVIGADHVAAAADGDALLLLAIPVLWIVGVVVLVAFKFRTR
Ga0209803_10172511	3300026332	Soil	MLVIGTDHVVAAAGDEAILILAIPVLWILGVIVIVALKLRSR
Ga0209808_10305545	3300026523	Soil	MLVIGTDHVVAAAGDEAILILAIPVLWILGVIVSVALK
Ga0209058_10313492	3300026536	Soil	MMLVMAADHVAAAVGGDALFLLAIPVLWLIGVVLLIAFKFRSR
Ga0209590_103920613	3300027882	Vadose Zone Soil	MMLLIGADHVAAAAGGDAMLFLAIPVLWIIGVIVFVAFKFRSR
Ga0137415_101106252	3300028536	Vadose Zone Soil	MLVIGTDHVAAAAGADAVLLLAIPVLWIIGVIVFVAFKFHSR
Ga0307287_100836341	3300028796	Soil	TFMFVIGADHVAAASGNDAILFLAIPVLWIIGVIVFVAFKFRTR
Ga0307292_102936082	3300028811	Soil	IIGADHVAAASSGEVMFLLAIPVLWIVGVIVFVAFKFHSR
Ga0307302_103327412	3300028814	Soil	RVSILTLMLVIGADHVAAASGNDAILFLAIPVLWIIGVIVFVAFKFRTR
Ga0307312_108131841	3300028828	Soil	MRQYTDIMLVIGADHVAAAAGGDALLLLAIPVLWIVG
Ga0307277_100017839	3300028881	Soil	MLVIGADHIAAASGGDAILFLAIPVLWMIGVIVFVAFKFHSR
Ga0307469_101484492	3300031720	Hardwood Forest Soil	MLVIGADHVASAAGADAIVLLAVPVLWIVGVVLFVAFKLHRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097048

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences