Metagenome / Metatranscriptome Family F096948

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096948
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	67 residues
Representative Sequence	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT
Number of Associated Samples	79
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	29.13 %
% of genes near scaffold ends (potentially truncated)	49.04 %
% of genes from short scaffolds (< 2000 bps)	86.54 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.615 % of family members)
Environment Ontology (ENVO)	Unclassified (57.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.885 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.67% β-sheet: 0.00% Coil/Unstructured: 33.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04392	ABC_sub_bind	6.73
PF03401	TctC	2.88
PF05118	Asp_Arg_Hydrox	2.88
PF02586	SRAP	1.92
PF08388	GIIM	1.92
PF13340	DUF4096	1.92
PF00561	Abhydrolase_1	0.96
PF03466	LysR_substrate	0.96
PF00884	Sulfatase	0.96
PF16694	Cytochrome_P460	0.96
PF13442	Cytochrome_CBB3	0.96
PF01544	CorA	0.96
PF07683	CobW_C	0.96
PF07883	Cupin_2	0.96
PF13374	TPR_10	0.96
PF02738	MoCoBD_1	0.96
PF02518	HATPase_c	0.96
PF02796	HTH_7	0.96
PF04909	Amidohydro_2	0.96
PF00239	Resolvase	0.96
PF01135	PCMT	0.96
PF13614	AAA_31	0.96
PF01887	SAM_HAT_N	0.96
PF03992	ABM	0.96
PF00890	FAD_binding_2	0.96
PF13432	TPR_16	0.96
PF04199	Cyclase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.73
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.88
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	2.88
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.92
COG0523	Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family	General function prediction only [R]	0.96
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.96
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.96
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	0.96
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.96
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.96
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.96
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.96
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.65 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.96 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.96 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.96 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
Bradyrhizobium sp. AUGA SZCCT0283	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	0.96 %
unclassified Nonomuraea	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → unclassified Nonomuraea	0.96 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
Nonomuraea sp. FMUSA5-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → unclassified Nonomuraea → Nonomuraea sp. FMUSA5-5	0.96 %
Bradyrhizobium sp. AUGA SZCCT0283	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	0.96 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10003476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4275	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10102451	Not Available	705	Open in IMG/M
3300004152\|Ga0062386_100857570	Not Available	749	Open in IMG/M
3300004152\|Ga0062386_100996392	Not Available	694	Open in IMG/M
3300004633\|Ga0066395_10907552	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300005332\|Ga0066388_101343410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1236	Open in IMG/M
3300005363\|Ga0008090_10144619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	993	Open in IMG/M
3300005363\|Ga0008090_15307943	Not Available	574	Open in IMG/M
3300005713\|Ga0066905_100333959	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300005713\|Ga0066905_102127141	Not Available	522	Open in IMG/M
3300005764\|Ga0066903_101147476	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300005764\|Ga0066903_102787351	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300005764\|Ga0066903_103446569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	853	Open in IMG/M
3300005764\|Ga0066903_104984491	Not Available	704	Open in IMG/M
3300005993\|Ga0080027_10023135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2214	Open in IMG/M
3300006059\|Ga0075017_100585495	Not Available	852	Open in IMG/M
3300006797\|Ga0066659_11565371	Not Available	553	Open in IMG/M
3300006854\|Ga0075425_100361980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1670	Open in IMG/M
3300009012\|Ga0066710_100609847	Not Available	1656	Open in IMG/M
3300009038\|Ga0099829_10594031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	920	Open in IMG/M
3300009792\|Ga0126374_10267093	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300010047\|Ga0126382_11019650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300010048\|Ga0126373_10064504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3291	Open in IMG/M
3300010366\|Ga0126379_12897917	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300010376\|Ga0126381_101687272	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300012096\|Ga0137389_11494241	Not Available	571	Open in IMG/M
3300012189\|Ga0137388_10560555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1062	Open in IMG/M
3300012199\|Ga0137383_10347899	Not Available	1086	Open in IMG/M
3300012201\|Ga0137365_11021483	Not Available	599	Open in IMG/M
3300012207\|Ga0137381_11479772	Not Available	571	Open in IMG/M
3300012210\|Ga0137378_10980267	Not Available	759	Open in IMG/M
3300012210\|Ga0137378_11169709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300012362\|Ga0137361_11190494	Not Available	684	Open in IMG/M
3300016270\|Ga0182036_10595944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	886	Open in IMG/M
3300016270\|Ga0182036_10786310	Not Available	774	Open in IMG/M
3300016294\|Ga0182041_10758636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300016319\|Ga0182033_11184322	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300016341\|Ga0182035_10923770	Not Available	771	Open in IMG/M
3300016371\|Ga0182034_10160350	All Organisms → cellular organisms → Bacteria → Proteobacteria	1700	Open in IMG/M
3300016371\|Ga0182034_10216448	Not Available	1491	Open in IMG/M
3300016387\|Ga0182040_10478976	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300016387\|Ga0182040_10585380	Not Available	902	Open in IMG/M
3300016422\|Ga0182039_10959652	Not Available	765	Open in IMG/M
3300016422\|Ga0182039_11127986	Not Available	707	Open in IMG/M
3300016445\|Ga0182038_10648609	Not Available	915	Open in IMG/M
3300016445\|Ga0182038_11681831	Not Available	572	Open in IMG/M
3300018060\|Ga0187765_10260868	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300021559\|Ga0210409_11277541	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300021560\|Ga0126371_12605858	Not Available	612	Open in IMG/M
3300026281\|Ga0209863_10085130	Not Available	932	Open in IMG/M
3300026557\|Ga0179587_10685459	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300026852\|Ga0207838_106184	Not Available	650	Open in IMG/M
3300027680\|Ga0207826_1208691	Not Available	525	Open in IMG/M
3300027846\|Ga0209180_10280102	Not Available	957	Open in IMG/M
3300027911\|Ga0209698_10128241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → unclassified Nonomuraea → Nonomuraea sp. FMUSA5-5	2096	Open in IMG/M
3300028047\|Ga0209526_10470851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	823	Open in IMG/M
3300031543\|Ga0318516_10517059	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300031546\|Ga0318538_10238904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	974	Open in IMG/M
3300031561\|Ga0318528_10139394	All Organisms → cellular organisms → Bacteria → Proteobacteria	1288	Open in IMG/M
3300031572\|Ga0318515_10460592	Not Available	680	Open in IMG/M
3300031573\|Ga0310915_10053731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2610	Open in IMG/M
3300031679\|Ga0318561_10646919	Not Available	582	Open in IMG/M
3300031679\|Ga0318561_10765796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300031681\|Ga0318572_10409580	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300031719\|Ga0306917_10227531	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300031719\|Ga0306917_10603110	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300031744\|Ga0306918_10004622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7240	Open in IMG/M
3300031744\|Ga0306918_10420352	Not Available	1043	Open in IMG/M
3300031747\|Ga0318502_10745196	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300031748\|Ga0318492_10393452	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300031770\|Ga0318521_10637769	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300031771\|Ga0318546_11201724	Not Available	533	Open in IMG/M
3300031778\|Ga0318498_10029604	All Organisms → cellular organisms → Bacteria	2371	Open in IMG/M
3300031780\|Ga0318508_1168865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300031781\|Ga0318547_10913840	Not Available	548	Open in IMG/M
3300031782\|Ga0318552_10450547	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031795\|Ga0318557_10027598	All Organisms → cellular organisms → Bacteria → Proteobacteria	2270	Open in IMG/M
3300031797\|Ga0318550_10361324	All Organisms → cellular organisms → Bacteria → Proteobacteria	703	Open in IMG/M
3300031805\|Ga0318497_10492910	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300031819\|Ga0318568_10977181	Not Available	523	Open in IMG/M
3300031821\|Ga0318567_10208421	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300031821\|Ga0318567_10593428	Not Available	629	Open in IMG/M
3300031890\|Ga0306925_10307760	All Organisms → cellular organisms → Bacteria	1704	Open in IMG/M
3300031890\|Ga0306925_11598316	Not Available	634	Open in IMG/M
3300031897\|Ga0318520_10170074	All Organisms → cellular organisms → Bacteria → Proteobacteria	1273	Open in IMG/M
3300031897\|Ga0318520_10666044	Not Available	649	Open in IMG/M
3300031910\|Ga0306923_10041590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5023	Open in IMG/M
3300031942\|Ga0310916_11024311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	688	Open in IMG/M
3300031945\|Ga0310913_10107026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1898	Open in IMG/M
3300031946\|Ga0310910_10278192	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300031947\|Ga0310909_11397418	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031981\|Ga0318531_10262475	Not Available	780	Open in IMG/M
3300032041\|Ga0318549_10170186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	974	Open in IMG/M
3300032041\|Ga0318549_10381861	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300032041\|Ga0318549_10583579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300032042\|Ga0318545_10014269	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300032066\|Ga0318514_10747951	Not Available	520	Open in IMG/M
3300032261\|Ga0306920_100026446	All Organisms → cellular organisms → Bacteria	8203	Open in IMG/M
3300032261\|Ga0306920_100129098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	3761	Open in IMG/M
3300032261\|Ga0306920_100329202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2274	Open in IMG/M
3300032261\|Ga0306920_101870840	Not Available	845	Open in IMG/M
3300032261\|Ga0306920_104038872	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300033289\|Ga0310914_10562153	Not Available	1030	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.04%
Host-Associated	Host-Associated	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.19%
Aquatic	Environmental → Aquatic	3.85%
Plants	Host-Associated → Plants	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.19%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Sediment	Environmental → Aquatic → Sediment	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026852	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 62 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100034766	3300000597	Forest Soil	VFKLIGIILAAAPIVLFLRAIFKGQLKKRSQPLSEFKKQMDYLVWVILFFIGCGVVYSIGKLIYHFVT*
AF_2010_repII_A1DRAFT_101024512	3300000597	Forest Soil	VYKLLGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSIGKLFYQFLT*
Ga0062386_1008575701	3300004152	Bog Forest Soil	MYKLIGIILAAVPIVLFLRAIFMGQSKKKSQAISDFKRQMDYLVWVILFLIGCGVAYSIGKLLYHFVL*
Ga0062386_1009963921	3300004152	Bog Forest Soil	MYKLIGLILAGVPVVLFLRAIFVRHSSKTRSQAVSEFKKQMDYLVWVLLFLIGCGVAVSIGKLLYQFSS*
Ga0066395_109075522	3300004633	Tropical Forest Soil	VAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFLIGCGVAYSIGKLIYQFLT
Ga0066388_1013434103	3300005332	Tropical Forest Soil	IILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFFIGCGVAYSIGKLIYQFLT*
Ga0008090_101446191	3300005363	Tropical Rainforest Soil	VYKLLGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSIGKLFYQFLT
Ga0008090_153079431	3300005363	Tropical Rainforest Soil	VFKLIGIILAAAPIVLFLRAIFKGQLKKRSQPLSEFKKQMDYLVWVILFFIGCGVVYSIGKLIYHFVT
Ga0066905_1003339593	3300005713	Tropical Forest Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFLIGCGVAYSIGKLIYQFLT*
Ga0066905_1021271411	3300005713	Tropical Forest Soil	LIGIILAAAPIVLFLRAILKGQLKKRSEGLSDFTKQMDYLVWAILFFIGCGVAYSIGKL
Ga0066903_1011474764	3300005764	Tropical Forest Soil	VYKLIGIILAAAPIILFLRAIFKSQLKKKSQGLAEFKKQIDYLVWIILFVVGCGVVYSIGKLIYQFVT*
Ga0066903_1027873512	3300005764	Tropical Forest Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSEGLSDFAKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT*
Ga0066903_1034465692	3300005764	Tropical Forest Soil	VYKLIGIIVAAAPIVLFLRAIFKGRLKKRSQALSDFTKQIDYLVWAILLFIGCAVVYTIGKVIYQFLT*
Ga0066903_1049844911	3300005764	Tropical Forest Soil	LIGIILAAAPIVLFLRAILKGQLKKRSEGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQ
Ga0080027_100231352	3300005993	Prmafrost Soil	MYKLIGIILAAVPVVLFLRAIFPGQSKKRSQAVADFKKRFDYFLWAMLLLIGCGLVYSVGKLFLD*
Ga0075017_1005854951	3300006059	Watersheds	MYKLIGIIVAAIPLVLFLRAIFMGQSKKRWQAVSDFKKQVDYLVWAILFLIGCTVVYSIGKLILN*
Ga0066659_115653711	3300006797	Soil	MFKLIGIVVAVIPIVLFLRPFFMGQLKKRSQVKSDFQRQIDYLVWGILFFIGCGVAYAIAKLVFQFSLK*
Ga0075425_1003619804	3300006854	Populus Rhizosphere	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT*
Ga0066710_1006098471	3300009012	Grasslands Soil	MFKLIGIVVAVIPIVLFLRPFFMGQLKKRSQVKSDFQRQIDYLVWGILFFIGCGVAYAIAKLVFQFSLK
Ga0099829_105940311	3300009038	Vadose Zone Soil	VFKLIGILVAAVPIVLFLRAIFVRQSKKRSQAVSDFKKQMDYLVWVILFIIGCGIVYAIGKLIHQFLI*
Ga0126374_102670932	3300009792	Tropical Forest Soil	VYKLIGIIVAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFLIGCGVAYSIGKLIYQFLT*
Ga0126382_110196502	3300010047	Tropical Forest Soil	AAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSIGKLFYQFLT*
Ga0126373_100645041	3300010048	Tropical Forest Soil	MYKLIAIIIAAMPVVLFLRTVFGGQSKKRAQPMSGFKKQVDYLVWAMLFLIGCGFAYSIGKLILN*
Ga0126379_128979171	3300010366	Tropical Forest Soil	KNICVYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT*
Ga0126381_1016872721	3300010376	Tropical Forest Soil	KNICVYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDNLVWAILFFIGCGVAYSIGKLIYQFLT*
Ga0136449_1001167466	3300010379	Peatlands Soil	MYKLIGIIVAAIPFVLFLRTLLSGKPKKRSQAVSDFMRQVDYVVWVLLFLIGCGVVYSIGKLILS*
Ga0137389_114942411	3300012096	Vadose Zone Soil	VFKLIGILVAEVPIVLFLRAIFVRQSKKRSQAVSDFKKQMDYLVWVILFIIGCGIVYAIGKLIHQFLI*
Ga0137388_105605551	3300012189	Vadose Zone Soil	PIVLFLIAIFVRQSKKRSQAVSDFKKQMDYLVWVILFIIGCGIVYAIGKLIHQFLI*
Ga0137383_103478992	3300012199	Vadose Zone Soil	LYKLIGIILAAIPVVLFLRAVFFTGQSKKRSKVASEFKKQLDFLVWTILFWIGCGVAYSIWKLFLS*
Ga0137365_110214832	3300012201	Vadose Zone Soil	MFKLIGLIVAVIPIVLFLRPFFMGQAKKPSQGRSEFREQVDYFVWGLLFLIGCAVVYSIAKLV*
Ga0137381_114797722	3300012207	Vadose Zone Soil	LYKLIGIILAAIPVVLFLRAVFFTGQSKKRSKVASEFKKQLDFLVWAILFWIGCGVAYSIWKLFLS*
Ga0137378_109802672	3300012210	Vadose Zone Soil	LYKLIGIILAAIPVVLFLRAVFFTGQSKKRSKAASEFKKQLDFLVWAILFWIGCGVAYSIWKLFLS*
Ga0137378_111697091	3300012210	Vadose Zone Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYS
Ga0137361_111904942	3300012362	Vadose Zone Soil	MYKLIGIVVAVIPIVLFLRPFFIKQLKKRSQVKSDFLRQIDYLVWGILFFIGCGIAYSIAKLVFQF*
Ga0182036_105959443	3300016270	Soil	VYKFVGIVLAAAPIVLFLRAIFKGQLKKSQPFSEFKMQMDYLVWVILIVIGCGVAYSIGKLIYQFLT
Ga0182036_107863101	3300016270	Soil	VYKFIGIVLAVAPIVLFLRAIFKRQLKKSQPLSDFKKQMDYLVWVILFVIGCGVAYSIGKLIYQFLT
Ga0182041_107586362	3300016294	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYTIGKLFYQFLT
Ga0182033_111843221	3300016319	Soil	VYKLIGIILAAAPIVLFLRAIFKGRLKKRSQGLSDFKKQMDYLVWAVLFFIGCAVVYSIGKLIYQFLT
Ga0182035_109237701	3300016341	Soil	MKETSVYKLIGIILAAAPIVLFLRAIFKGRLKKRSQALSDFKKQIDYLVFAILVLIGCAVVYSIGKLIYQFLAR
Ga0182034_101603502	3300016371	Soil	MYKFIGIVLAAAPIVLFLRAIFKGQLKKRSQGLSEFKKQIDHLVWSILFFIGCGVVYSIGKLIYQFLT
Ga0182034_102164482	3300016371	Soil	KLIGIILAAAPIVLFLRALFRGQLQKRSLGLSDFRKQMDFFVWAILLFIGCAVVYAIGKLIYQFLT
Ga0182040_104789761	3300016387	Soil	VYKLLGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSIGKLF
Ga0182040_105853803	3300016387	Soil	VYKFIGIVLAVAPIVLFLRAIFKGQLKKSQPLSDFKKQMDYLVWVILFVIGCGVAYSIGKLIYQFLT
Ga0182039_109596521	3300016422	Soil	MYKLIGIIVAAVPIVLFLRAIFKGQSTKGSRAISDFRKQMDYLVWVVLFLIGCGVVYSLGKLIYQFLT
Ga0182039_111279861	3300016422	Soil	VYKFIGIVLAAAPIILFLRAIFKGQLKKRSQPLSDFKRQMDYLVWVILFVIGCGVAYSIGKLI
Ga0182038_106486092	3300016445	Soil	VYKFIGIVLAAAPIILFLRAIFKGQLKKRSQPLSDFKRQMDYLVWVILFVIGCGVAYSIGKLIYQFST
Ga0182038_116818311	3300016445	Soil	VYKLIGIILAAAPIVLFLRAIFKGQLAKRSKAVSEFRKQMDYLVWVILFFIGCGVVYSIGKLIYQFLT
Ga0187765_102608682	3300018060	Tropical Peatland	MYKLIGIILAAAPIVLFLRAIFKGQLQKRSQILSDFRKQMDFLVWAILFFIGCGVVYSIGKLIYQFLT
Ga0210409_112775411	3300021559	Soil	MFKLIGIILAAIPVVLFLRAIFAGQLKKRSQAVSDFKRQVDYMIWAMLFLIGCGFVYSIG
Ga0126371_126058582	3300021560	Tropical Forest Soil	VYKLLGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSI
Ga0209863_100851302	3300026281	Prmafrost Soil	MYKLIGIILAAVPVVLFLRAIFPGQSKKRSQAVADFKKRFDYFLWAMLLLIGCGLVYSVGKLFLD
Ga0179587_106854591	3300026557	Vadose Zone Soil	MYKLLGIMLAAIPIVLFLRAIFTTQSKKRSQAVSDFKKQIDYLVWAILFLIGCEVVYLVGTLIF
Ga0207838_1061841	3300026852	Tropical Forest Soil	MYKLIGLIVAAVPIVLFLRAIFKGQSKKGSKAISDFKKQMDYLVWVVLFLIGCGVVYSLGKLIYQFLT
Ga0207826_12086911	3300027680	Tropical Forest Soil	MYKLIGLIVAAVPIVLFLRAIFKGQSKKGSKAISDFRKQMDYLVWVVLFLIGCGVVYSLGKLIYQFLT
Ga0209180_102801022	3300027846	Vadose Zone Soil	VAAVPIVLFLRAIFVRQSKKRSQAVSDFKKQMDYLVWVILFIIGCGIVYAIGKLIHQFLI
Ga0209698_101282411	3300027911	Watersheds	MYKLIGIIVAAIPLVLFLRAIFMGQSKKRWQAVSDFKKQVDYLVWAILFLIGCTVVYSIGKLILN
Ga0209526_104708511	3300028047	Forest Soil	LIGIILAAAPIVLFLRAIFKGQLKKRSQGLSDFKKQMDYFVWAILFIIGCGVVYSIAKLIYQFLT
Ga0318516_105170592	3300031543	Soil	MYKLIGIILAAVPIVLFLRAVFIGQSKKRAQAVSDFKKQMNYLIWVMLFVIGCGVVYSIGKLVYQFLI
Ga0318538_102389043	3300031546	Soil	QNTSRVNYWSSTPFSKRTSPVYKFVGIVLAAAPIVLFLRAISKGQLKKSQPFSEFKMQMDYLVWVILIVIGCGVAYSIGKLIYQFLT
Ga0318528_101393943	3300031561	Soil	YRVSFMYKLIGIILAAVPIVLFLRAVFIGQSKKRAQAVSDFKKQMNYLIWVMLFVIGCGVVYSIGKLVYQFLI
Ga0318515_104605922	3300031572	Soil	PSRVDYRSPTPFSERISPVYKFIGIVLAVAPIVLFLRAIFKGQLKKSQPFSEFKMQMDYLVWVILIVIGCGVAYSIGKLIYQFLT
Ga0310915_100537316	3300031573	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYLIGKLFYQFLT
Ga0318561_106469192	3300031679	Soil	VYKFVGIVLAAAPIVLFLRAIFKGQLKKSQPLSEFKKQMDYLVWVILIIIGCGVAYSIGKLIYQFLT
Ga0318561_107657962	3300031679	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYLIGKLFY
Ga0318572_104095802	3300031681	Soil	VYRVSFMYKLIGIILAAVPIVLFLRAVFIGQSKKRAQAVSDFKKQMNYLIWVMLFVIGCGVVYSIGKLVYQFLI
Ga0306917_102275313	3300031719	Soil	NPSRVDYRSPTPFSERISPVYKFIGIVLAVAPIVLFLRAIFKGQLKKSQPLSDFKKQMDYLVWVILFVIGCGVAYSIGKLIYQFLT
Ga0306917_106031102	3300031719	Soil	VYKLIGIIVAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFLIGCGVAYSIGKLIYQFLT
Ga0306918_100046229	3300031744	Soil	QNTSRVNYWSSTPFSKRTSPVYKFVGIVLAAAPIVLFLRAIFKGQLKKSQPFSEFKMQMDYLVWVILIVIGCGVAYSIGKLIYQFLT
Ga0306918_104203521	3300031744	Soil	VYKLIGIIVAAAPIVLFLRAIFKGQSTKRSKAISDFKKQMDYLVWVILFVIGCGVVYSIGKLLYQFLT
Ga0318502_107451962	3300031747	Soil	VAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFLIGCGVAYSIGKLIYQF
Ga0318492_103934522	3300031748	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYTIGKLFY
Ga0318521_106377691	3300031770	Soil	TCVYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT
Ga0318546_112017241	3300031771	Soil	ILRVKGSLLVYKLIGIIVAAAPIVLFLRAIFKGQSTKRSKAISDFKKQMDYLVWVILFVIGCGVVYSIGKLLYQFLT
Ga0318498_100296041	3300031778	Soil	IVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSIGKLFYQFLT
Ga0318508_11688651	3300031780	Soil	LIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYTIGK
Ga0318547_109138401	3300031781	Soil	VYKFVGIVLAAAPIVLFLRAIFKGQLKKSQPLSEFKKQMDYLVWVILVVIGCGVAYSIGKLIYQFLT
Ga0318552_104505472	3300031782	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFFIGCGVAWSIGKLIYQFLT
Ga0318557_100275983	3300031795	Soil	VYKLLGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYTIGKLFYQFLT
Ga0318550_103613241	3300031797	Soil	MYKLIGIILAAVPIVLFLRAVFIGQSKKRAQAVSDFKKQMNYLIWVMLFVIGCGVVYSIGKLV
Ga0318497_104929101	3300031805	Soil	RTSVYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFFIGCGVAWSIGKLIYQFLT
Ga0318568_109771811	3300031819	Soil	PFSERISPVYKFIGIVLAVAPIVLFLRAIFKGQLKKSQPLSDFKKQMDYLVWVILFVIGCGVAYSIGKLIYQFLT
Ga0318567_102084211	3300031821	Soil	QIERTSVYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFFIGCGVAWSIGKLIYQFLT
Ga0318567_105934281	3300031821	Soil	GIVLAVAPIVLFLRAIFKRQLKKSQPLSDFKKQMDYLVWVILFVIGCGVAYSIGKLIYQFST
Ga0306925_103077601	3300031890	Soil	MKETSVYKLIGIILAAAPIVLFLRAIFKGRLKKRSQALSDFKKQIDYLVFAILVLIGCAVVYSIGKLIYQFLT
Ga0306925_115983162	3300031890	Soil	MYKLIGIIVAAVPIVLFLRAIFKGQSKKGSKAISDFRKQMDYLVWVVLFLIGCGVVYSLGKLIYQFLT
Ga0318520_101700741	3300031897	Soil	IVYRVSFMYKLIGIILAAVPIVLFLRAVFIGQSKKRAQAVSDFKKQMNYLIWVMLFVIGCGVVYSIGKLVYQFLI
Ga0318520_106660442	3300031897	Soil	YWSSTPFSKRTSPVYKFVGIVLAAAPIVLFLRAIFKGQLKKSQPFSEFKMQMDYLVWVILIVIGCGVAYSIGKLIYQFLT
Ga0306923_100415907	3300031910	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT
Ga0310916_110243111	3300031942	Soil	VYKLIGIILAAAPIVLLLRAIFKGQLKKRSQTLSDFKKQIDYLVFAILIFIGCAVVYSIGKLIYQFLI
Ga0310913_101070264	3300031945	Soil	AAPIVLFLRAISKGQLKKSQPFSEFKMQMDYLVWVILIVIGCGVAYSIGKLIYQFLT
Ga0310910_102781921	3300031946	Soil	QIENTCVYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT
Ga0310909_113974181	3300031947	Soil	YKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQFLT
Ga0318531_102624752	3300031981	Soil	VYKFIGIVLAAAPIVLFLRAIFKGQLKKSQPLSEFKKQMDYLVWVILIVIGCGVAYSIGKLIYQFLT
Ga0318549_101701862	3300032041	Soil	VYKLLGIILAAASIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSIGKLFYQFLT
Ga0318549_103818612	3300032041	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAVLFLIGCGVAYS
Ga0318549_105835792	3300032041	Soil	VYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFTKQMDYLVWAILFFIGCGVAYSIGKLIYQF
Ga0318545_100142691	3300032042	Soil	KNICVYKLIGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIGCGVAYSIGKLFYQFLT
Ga0318514_107479511	3300032066	Soil	SFMYKLIGIILAAVPIVLFLRAVFIGQSKKRAQAVSDFKKQMNYLIWVMLFVIGCGVVYSIGKLVYQFLI
Ga0306920_1000264461	3300032261	Soil	RVDYWSPTPFSERISPVYKFIGIVLAVAPIVLFLRAIFKRQLKKSQPLSDFKKQMDYLVWVILFVIGCGVAYSIGKLIYQFLT
Ga0306920_1001290982	3300032261	Soil	VYKLLGIFLAAAPIVLFLRAILKGQLKKRSQGLSDFKKQMDYLVWAILFFIACGLAYSIGKLFYQFLT
Ga0306920_1003292024	3300032261	Soil	IGIILAAAPIVLFLRAILKGQLKKRSQGLSDFKEQMDYLVWAILFFIGCGVAYTIGKLFYQFLT
Ga0306920_1018708402	3300032261	Soil	VYKLIGIILAAAPIVLFLRAIFKGRLKKRSQALSDFKKQIDYLVFAILIFIGCAVVYSIGKLIYQFLI
Ga0306920_1040388722	3300032261	Soil	YSTPFSKRTSPVYKFIGIVLAAAPIVLFLRAIFKGQLKKRSQPLSEFKKQMDYLVWVILVVIGCGVAYSIGKLIYQFLT
Ga0310914_105621532	3300033289	Soil	KETSVYKLIGIILAAAPIVLFLRAIFKGRLKKRSQALSDFKKQIDYLVFAILVLIGCAVVYSIGKLIYQFLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096948

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences