Metagenome / Metatranscriptome Family F096934

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096934
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	70 residues
Representative Sequence	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNEPMPPSMYEYFHGAVWQRKKLP
Number of Associated Samples	83
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	25.00 %
% of genes near scaffold ends (potentially truncated)	33.65 %
% of genes from short scaffolds (< 2000 bps)	89.42 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (20.192 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.62% β-sheet: 10.31% Coil/Unstructured: 69.07%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF02517	Rce1-like	11.54
PF04959	ARS2	11.54
PF04392	ABC_sub_bind	9.62
PF07883	Cupin_2	2.88
PF13419	HAD_2	0.96
PF01425	Amidase	0.96
PF16864	Dimerisation2	0.96
PF11684	DUF3280	0.96
PF16694	Cytochrome_P460	0.96
PF13308	YARHG	0.96
PF07813	LTXXQ	0.96
PF13242	Hydrolase_like	0.96
PF01255	Prenyltransf	0.96
PF08450	SGL	0.96
PF02371	Transposase_20	0.96
PF01165	Ribosomal_S21	0.96
PF00011	HSP20	0.96
PF01220	DHquinase_II	0.96
PF00578	AhpC-TSA	0.96
PF05239	PRC	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	11.54
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	11.54
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	9.62
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.85
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	0.96
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0757	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.96
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.96
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.96
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.73 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	75.96 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	66.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.81 %
Unclassified	root	N/A	2.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	66.35 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.88 %
Unclassified	root	N/A	2.88 %
Thalassobaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	66.35 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.88 %
Unclassified	root	N/A	2.88 %
Thalassobaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Thalassobaculum	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	66.35 %
Unclassified	root	N/A	2.88 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1.92 %
Thalassobaculum salexigens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Thalassobaculum → Thalassobaculum salexigens	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c1012123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633	Open in IMG/M
3300000956\|JGI10216J12902_100403181	All Organisms → cellular organisms → Bacteria → Proteobacteria	2081	Open in IMG/M
3300001545\|JGI12630J15595_10085640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300002917\|JGI25616J43925_10087112	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300005166\|Ga0066674_10543459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300005167\|Ga0066672_10091916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1835	Open in IMG/M
3300005174\|Ga0066680_10152938	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300005186\|Ga0066676_10898202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300005332\|Ga0066388_103492935	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300005439\|Ga0070711_100808333	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300005444\|Ga0070694_101808576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300005454\|Ga0066687_10858456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300005471\|Ga0070698_100864193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	849	Open in IMG/M
3300005553\|Ga0066695_10109438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1699	Open in IMG/M
3300005554\|Ga0066661_10265724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300005558\|Ga0066698_10466269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300005559\|Ga0066700_10309984	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300005764\|Ga0066903_100382715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2301	Open in IMG/M
3300005764\|Ga0066903_101532558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1260	Open in IMG/M
3300005764\|Ga0066903_104894991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300005764\|Ga0066903_105754617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651	Open in IMG/M
3300005764\|Ga0066903_108102720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300006031\|Ga0066651_10771302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300006800\|Ga0066660_10774808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	782	Open in IMG/M
3300006804\|Ga0079221_11261542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300006871\|Ga0075434_100938957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300006953\|Ga0074063_10037346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300007076\|Ga0075435_101625481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300009012\|Ga0066710_100171795	All Organisms → cellular organisms → Bacteria	3048	Open in IMG/M
3300009137\|Ga0066709_101556617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	950	Open in IMG/M
3300009143\|Ga0099792_10643858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	680	Open in IMG/M
3300009162\|Ga0075423_12781704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300010043\|Ga0126380_10056320	All Organisms → cellular organisms → Bacteria	2153	Open in IMG/M
3300010046\|Ga0126384_10468615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1079	Open in IMG/M
3300010047\|Ga0126382_10047929	Not Available	2482	Open in IMG/M
3300010047\|Ga0126382_10059712	All Organisms → cellular organisms → Bacteria	2282	Open in IMG/M
3300010047\|Ga0126382_10307951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1193	Open in IMG/M
3300010303\|Ga0134082_10213026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300010358\|Ga0126370_12674310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300010359\|Ga0126376_11033210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300010360\|Ga0126372_11164175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300010360\|Ga0126372_13152565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300010361\|Ga0126378_12327877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300010362\|Ga0126377_11107852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Thalassobaculum → Thalassobaculum salexigens	861	Open in IMG/M
3300010366\|Ga0126379_10019552	All Organisms → cellular organisms → Bacteria → Proteobacteria	5040	Open in IMG/M
3300010366\|Ga0126379_11069848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	912	Open in IMG/M
3300010376\|Ga0126381_100941606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1244	Open in IMG/M
3300010376\|Ga0126381_101552809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	956	Open in IMG/M
3300010376\|Ga0126381_101642876	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300010376\|Ga0126381_103767824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300010398\|Ga0126383_13247828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300011270\|Ga0137391_10948971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300012198\|Ga0137364_10540333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	877	Open in IMG/M
3300012200\|Ga0137382_10191376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1403	Open in IMG/M
3300012201\|Ga0137365_11036275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300012205\|Ga0137362_10076895	All Organisms → cellular organisms → Bacteria	2776	Open in IMG/M
3300012205\|Ga0137362_10972883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	723	Open in IMG/M
3300012205\|Ga0137362_11714330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300012208\|Ga0137376_10391063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1208	Open in IMG/M
3300012208\|Ga0137376_10411992	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300012211\|Ga0137377_10775251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300012349\|Ga0137387_10974887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300012356\|Ga0137371_10132323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1952	Open in IMG/M
3300012356\|Ga0137371_11069465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300012361\|Ga0137360_10296002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1342	Open in IMG/M
3300012362\|Ga0137361_10380444	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300012582\|Ga0137358_11093611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300012960\|Ga0164301_10940581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	674	Open in IMG/M
3300012971\|Ga0126369_11573655	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300012971\|Ga0126369_12804706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300012976\|Ga0134076_10526124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300015359\|Ga0134085_10312290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300015371\|Ga0132258_11094015	All Organisms → cellular organisms → Bacteria → Proteobacteria	2015	Open in IMG/M
3300015371\|Ga0132258_11429923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1747	Open in IMG/M
3300016422\|Ga0182039_10122174	All Organisms → cellular organisms → Bacteria → Proteobacteria	1966	Open in IMG/M
3300016445\|Ga0182038_10187577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1616	Open in IMG/M
3300018431\|Ga0066655_10131977	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300018482\|Ga0066669_10088091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2114	Open in IMG/M
3300021560\|Ga0126371_10596547	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300025910\|Ga0207684_10469543	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300025916\|Ga0207663_10998623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300026309\|Ga0209055_1107395	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300026310\|Ga0209239_1009727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5160	Open in IMG/M
3300026325\|Ga0209152_10130981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	955	Open in IMG/M
3300026330\|Ga0209473_1132621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1026	Open in IMG/M
3300027548\|Ga0209523_1033627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1033	Open in IMG/M
3300027548\|Ga0209523_1053330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300028718\|Ga0307307_10073356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1023	Open in IMG/M
3300028720\|Ga0307317_10073018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1120	Open in IMG/M
3300028828\|Ga0307312_10137042	Not Available	1545	Open in IMG/M
3300031544\|Ga0318534_10252067	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300031546\|Ga0318538_10341559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	808	Open in IMG/M
3300031716\|Ga0310813_11086007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300031771\|Ga0318546_10745375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	689	Open in IMG/M
3300031890\|Ga0306925_10686425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1073	Open in IMG/M
3300031890\|Ga0306925_12236780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300031890\|Ga0306925_12286456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300031894\|Ga0318522_10139760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	910	Open in IMG/M
3300031910\|Ga0306923_10857125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	998	Open in IMG/M
3300031941\|Ga0310912_10335115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1173	Open in IMG/M
3300031944\|Ga0310884_10929641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300032059\|Ga0318533_10157865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1608	Open in IMG/M
3300033289\|Ga0310914_10280493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1500	Open in IMG/M
3300033289\|Ga0310914_10651794	Not Available	947	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.19%
Host-Associated	Host-Associated	4.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.19%
Plants	Host-Associated → Plants	4.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.73%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_10121231	2228664021	Soil	MPHPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIAXEHXXXMPPSMYXYFXGAVWQRKKLP
JGI10216J12902_1004031814	3300000956	Soil	MPDPKDDPKSSEWRPYTFARDQWHCRICGDRFQSSEMVRKHIANEHNEIMPPSMYGYFHGAIWQRKKFP*
JGI12630J15595_100856401	3300001545	Forest Soil	DPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
JGI25616J43925_100871121	3300002917	Grasslands Soil	KMSNPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0066674_105434591	3300005166	Soil	MPDPKDDPKSSEWRPYIFASDQWHCRISGDRFLYSEMVRKHIADAHDENMPPSMYEYFHG
Ga0066672_100919164	3300005167	Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0066680_101529382	3300005174	Soil	MPDAKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0066676_108982022	3300005186	Soil	RLGHEIYLIIKMSDPKDDPKSSEWRPYAFARDQWHCRICGDRFLYSEMVRKHIASEHNETMPPTMYEYFRGAVWHRKKLP*
Ga0066388_1034929352	3300005332	Tropical Forest Soil	MADPKDDPKSSEWRPYIFARDQRHCRICGDRFLYSEMVRKHIANEHNETMPPSMYEYFQGAV
Ga0070711_1008083332	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MGCVDEEIKMPDPKDDHKSPEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNEIMPPSMYEYFQGAGRQRKKRP*
Ga0070694_1018085761	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MIASKRSPTADYYMPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETTPPSMYEYFHGAVWQRKKLP*
Ga0066687_108584561	3300005454	Soil	AAASHTGFIKMPDPKDDPKRSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHDETMPPSMYEYCHGAVWQRKKLP*
Ga0070698_1008641932	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPKDDPKSSEWRPYIFTRDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0066695_101094384	3300005553	Soil	MPDPKDDPKSSEWRPYIFTRDQWHCRICGDRFLVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0066661_102657242	3300005554	Soil	MSNPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANDHNETMPPSMYEYFHGAVWQRKKLP*
Ga0066698_104662692	3300005558	Soil	MPDSKADPRSSDWRPYMFARDQWHCRICGDRFLYSETVRKHIANGHNETMPPSMYEYFHGAVWQRKKLP*
Ga0066700_103099841	3300005559	Soil	IKMPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0066903_1003827152	3300005764	Tropical Forest Soil	MPHPKDDPKSPEWRPYIFARDQWHCRICGDRFLYCEMVRKHIATEHNETMPPSMFEYFRGAVWQRKKIP*
Ga0066903_1015325583	3300005764	Tropical Forest Soil	MPDPKDDPKSSEWRPYTFARDQWHCRICGDRFQNSEMVRKHIANEHNEIMPLSMYEYFYDAIWQRKKLS*
Ga0066903_1048949912	3300005764	Tropical Forest Soil	LRDPKMPSPKADPRSPEWRPYIFAANEWRCRICGDRFQYSETVRKQIADAHDENLPPSMYEYFRGAVWQRKKVP*
Ga0066903_1057546171	3300005764	Tropical Forest Soil	MPNPKDDPKSIEGRSYIFARDQWHCRICGDRVQYSETVRKHIAHAHDENIPPSMYEYFRGAVWQRKKIP*
Ga0066903_1081027202	3300005764	Tropical Forest Soil	MPHPKDDPKKPEWRPYIFARDQWHWRICGDRFLYSEMVRKHIANDHNETMPPSMYEYFHGAVWQRKKLH*
Ga0066651_107713021	3300006031	Soil	MPDPKDDPKSSEWRPYIFASDQWHCRISGDRFLYSEMVRKHIADAHDENMPPSMYEYFHGAVWQRKKMP*
Ga0066660_107748082	3300006800	Soil	VGRIVWASIYLIKMSDPKDDPKSSEWRPYAFARDQWHCRICGDRFLYSEMVRKHISSEHNETMPPPTYEYFRGAVWHRKKLP*
Ga0079221_112615422	3300006804	Agricultural Soil	MPNPKDDPKSPEWRPYIFARDQWHCRICGDRFQYSETVRKHIAHANDENMPPSMYEYFRGEVWQRKKIP*
Ga0075434_1009389572	3300006871	Populus Rhizosphere	LCKVLIKILIIKMPDPKDDPKSSEWRPYTFARDQWHCRICGDRFQSSEIVRKHIANEHNEIMPPSMYGYFHGAIWQRKKFP*
Ga0074063_100373461	3300006953	Soil	MPDPKDDPKSSEWRPYMFARDQWHCRICGDRFLYSEMVRKHIANDHNETMPPSVYEYFHGAVWQRKKFR*
Ga0075435_1016254811	3300007076	Populus Rhizosphere	MSDPKDDPKSSEWRPYVFARDQWHCRIFGDRFLYSETVRKHIANGHNETMPPSMYEYFHGAVWQRKKLP*
Ga0066710_1001717952	3300009012	Grasslands Soil	MPDPKDDSKSCEWRPYIFASDQWHCRISGDRFLYSEMVRKHIADAHDENMPPSMYEYFHGAVWQPRKMP
Ga0066709_1015566172	3300009137	Grasslands Soil	MPDPKDDPKSSEWRPYIFASDQWHCRISGDRFLYSEMVRKHIADAHDENMPPSMYEYFHGAVWQPRKMP*
Ga0099792_106438582	3300009143	Vadose Zone Soil	MSNPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0075423_127817041	3300009162	Populus Rhizosphere	LIKILIIKMPDPKDDPKSSEWRPYTFARDQWHCRICGDRFQSSEIVRKHIANEHNEIMPPSMYGYFHGAIWQRKKFP*
Ga0126380_100563202	3300010043	Tropical Forest Soil	MPHPKDDPKKPEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANDHNETMPPSMYEYFHGAVWQRKKLH*
Ga0126384_104686151	3300010046	Tropical Forest Soil	MPNPKDDPKSPEWRPYIFACDQWHCRICGDRFQYSEAVRKHVAHAHHENMPPSMYEYFR
Ga0126382_100479293	3300010047	Tropical Forest Soil	MPIPKDDPKSPEWRPYIFAGDEWHCRICGDRFQYSEWVRKHIAHAHDENIPPSMYEYFRGAVWQ*
Ga0126382_100597124	3300010047	Tropical Forest Soil	MKMPHPKDDPKKPEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANDHNETMPPSMYEYFHGAVWQRKKLH*
Ga0126382_103079511	3300010047	Tropical Forest Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNEPMPPSMYEYFHGAVWQRKKLP*
Ga0134082_102130262	3300010303	Grasslands Soil	MPDPKDDPKSSEWRPYIFASDQWHCRISGDRFLYSEMVRKHIANEHDETMPPSMYEYCHGAVWQRKKLP*
Ga0126370_126743101	3300010358	Tropical Forest Soil	FIKMPDPKDDPKKPEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANDHNETMPPSMYEYFHGAVWQRKKLH*
Ga0126376_110332101	3300010359	Tropical Forest Soil	LQDLKMPIPKDDPKSPEWRPYIFAGDEWHCRICGDRFQYSEWVRKHIAHAHDENIPPSMYEYFRGAVWQRKKIP*
Ga0126372_111641751	3300010360	Tropical Forest Soil	KDDPKSSEWRPYIFAQDQWHCRICRFLYSEMVRKHIANEHNETMPPSMYEYFRGAVWRRNMRGHG*
Ga0126372_131525651	3300010360	Tropical Forest Soil	VYLIIKMPDPKDDPKSSEWRPYVFAREQWYCRICGASFLYSETVRKHIANEHNEIMPPSMYEYFRGAIWQRKKLP*
Ga0126378_123278771	3300010361	Tropical Forest Soil	SEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANVHNETIPPSMYEYFHGAVWQRKKLP*
Ga0126377_111078523	3300010362	Tropical Forest Soil	HPYAFASHEWHCRICGDRFQYSETVRKHIADVHDESMPPTMFEYFRGAVWQRKKIA*
Ga0126379_100195523	3300010366	Tropical Forest Soil	MPIPKDYPKSPEWRPYIFAGDEWHCRICGDRFQYSESVRKHIAHAHDENIPSMYEYFRGAVWQ*
Ga0126379_110698481	3300010366	Tropical Forest Soil	MADPKDDPKSSEWRPYIFARDQRHCRICGDRFLYSEMVRKHIANEHNETMPPSMYEYFQGAVWQRKQLP*
Ga0126381_1009416062	3300010376	Tropical Forest Soil	MPDPKDGPKSSEWRPYVFGRDQWHCRICGDRFLYSETVRKHIATEHNETMPPSIYEYFHGAVWQRKKLL*
Ga0126381_1015528093	3300010376	Tropical Forest Soil	LRLDSDGTIIKTMPDPKDDQKSPEWRPYIFARDQWHCRICGDRFQYSEAVGKHVAHAQHENMPPSMYEYFRGAVWHRKKIP*
Ga0126381_1016428762	3300010376	Tropical Forest Soil	MADPKDDPKSSEWRPYIFARDQRHCRICGDRFLYSEMVRKHIANEHNETMPPSMYEYFQGAVW
Ga0126381_1037678241	3300010376	Tropical Forest Soil	LPALGCQALAAAIIKMPDPKDDPNSPEWRPYIFARDQWHRRICGDRFLYSEMVRKHIATEHNETMPPSMYEYFQGAVWQRKKLP*
Ga0126383_132478281	3300010398	Tropical Forest Soil	MPDPKDDPKSSEWRPYIFAGDQWHCRICGDRFLYSEMVGKHIANEHNETMPPSMYEYFHGTIWQRKKLP*
Ga0137391_109489712	3300011270	Vadose Zone Soil	MSDPKDDPKSSKWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETKPPSMYEYFHGAVWQRKKFP*
Ga0137364_105403331	3300012198	Vadose Zone Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYCEMVRKHIANEHNETMPPSMYEYFHGAVWQRKKLP*
Ga0137382_101913763	3300012200	Vadose Zone Soil	MPDAKDDPKSSEWRPYIFARDQWHCRICSDRVLYSEMVRKHIADAHDEGMPPSMYDYFHGAVWQ
Ga0137365_110362752	3300012201	Vadose Zone Soil	MPDPKDDPKSSEWRPYTFASDQSHCRICGDRFLYSEMVRKHIADAHDENMPPSMYEYFRGAVWQRKK
Ga0137362_100768952	3300012205	Vadose Zone Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWKRKKLP*
Ga0137362_109728831	3300012205	Vadose Zone Soil	MPDPKDDPKSSEWRPYIFARDQWHCRIYGDRFLYSEMVRKHIVNEHNETMPPSMYEYFHGAVWQRKKLP*
Ga0137362_117143301	3300012205	Vadose Zone Soil	SARRRLIIKMSNPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIADAHDEGMPPSMYDYFHGAVWQRKKMP*
Ga0137376_103910632	3300012208	Vadose Zone Soil	MPDPKDNPKSPEWRPYIFARDQWHCRICGDRFLYSEMVRKRIANEHNETMPPSMYEYFQGAVWQRKKLS*
Ga0137376_104119921	3300012208	Vadose Zone Soil	DDPKSSEWRPYIFARDQWHCRICGDRFLYSELVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0137377_107752512	3300012211	Vadose Zone Soil	MPDPKDDPKSSEWRPYIFASDQWHCRICGDRFLYSEMVRKHIAAAHDENKPPSMYEYFHGAVWQRKKMP*
Ga0137387_109748871	3300012349	Vadose Zone Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNEIMPPSMYEYFRGAVWQ
Ga0137371_101323233	3300012356	Vadose Zone Soil	LIIKMPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYCEMVRKHIANEHNETMPPSMYEYFHGAVWQRKKLP*
Ga0137371_110694652	3300012356	Vadose Zone Soil	MLDPKDDPKSSEWRPYIFARDLWHCRICGEHIANEHNETMPPSMYEYFRGAVWQRKNLP*
Ga0137360_102960024	3300012361	Vadose Zone Soil	MSDPKDDPKSSKWRPYIFARDQWHCRICGDSFLYSEMVRKHIANEHNETKPPSMYEYFHGAVWQRKKFP*
Ga0137361_103804441	3300012362	Vadose Zone Soil	KDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0137358_110936111	3300012582	Vadose Zone Soil	RVDLQMPHPKDDPKSSEWRPYIFARDQRHCRICGDRFLYSEMVRKHIADEHDENMPPSMYEYFRGAVWQRKKMPWLKN*
Ga0164301_109405811	3300012960	Soil	MPNPKDDPKSPEWRPYIFARDQWHCRICGDPFQYSETVRKHIAHAHDENMPPSMYEYFRGAVWQRKKIS*
Ga0126369_115736552	3300012971	Tropical Forest Soil	MPHPKDDPKKPEWRPYIFACDQWHCRICGDGFLYSEMVRKHIADAHDENIPPSMYEYFHGAVWQRKKMP*
Ga0126369_128047061	3300012971	Tropical Forest Soil	MPNPKDDPKSPEWRPYIFAHDQWHCRICGDRFPYSEAVRKHVAHAHHENMPPSMYEYFRGAVWHRKKIP*
Ga0134076_105261241	3300012976	Grasslands Soil	MPDPKDDPKSSEWRPYIFVRDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP*
Ga0134085_103122901	3300015359	Grasslands Soil	MPDPKDDLKSSEWRPYIFVRDQWHCRICGDRFLYSEMVPKHIANEHDETMPPSMYEYFHGAVWQRKKLP*
Ga0132258_110940154	3300015371	Arabidopsis Rhizosphere	MRDPKDDSKSSEWRPYIFARDQWHCRICGDRFSYSEMVRAYIANEHKETMPPSMYEYFHGAVWQRKKVP*
Ga0132258_114299234	3300015371	Arabidopsis Rhizosphere	MPHSKDDPKDPEWRPYIFAREQWHCRICGGRFQYSETVRKHIADAHDENMPPGMYEYFRGTLWQRKKIP*
Ga0182039_101221741	3300016422	Soil	MPHPKDDPKSPEWRPYIFARDQWHWRICGDRFHYSQTVRKHIAHAHDENIPPSMYEYFRGAVW
Ga0182038_101875772	3300016445	Soil	MPNPKDDPKSPEWRPYIFARDQWHCRICGDRFQYSETVRKHIAHAHDENIPPSTYEYFRGAVWQRKKIHDLAAKTYRRA
Ga0066655_101319771	3300018431	Grasslands Soil	SARRRLIIKMPDPKDDPKSSEWRPYIFTRDQWHCRICGDRFLVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP
Ga0066669_100880911	3300018482	Grasslands Soil	MSDPKNDPKSSEWRPYAFARDQWHCRICGDRFLYSEMVRKHISSEHNETMPPPTYEYFRGAVWHRKKLP
Ga0126371_105965471	3300021560	Tropical Forest Soil	MPHPKDDPKKPEWRPYIFARDQWHWRICGDRFLYSEMVRKHIANDHNETMPPSMYEYFHG
Ga0207684_104695433	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPKDDPKSSEWRPYIFTRDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP
Ga0207663_109986231	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MGCVDEEIKMPDPKDDHKSPEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNEIMPPSMYEYFQGAGRQRKKRP
Ga0209055_11073952	3300026309	Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP
Ga0209239_10097274	3300026310	Grasslands Soil	MPDPKDDPKSSEWRPYIFASDQWHCRISGDRFLYSEMVRKHIADAHDENMPPSMYEYFHGAVWQPRKMP
Ga0209152_101309812	3300026325	Soil	MADRKGDPKSSGWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP
Ga0209473_11326211	3300026330	Soil	MPDPKDDPKSSEWRPYIFVRDQWHCRICGDRFLYSEMVPKHIANEHDETMPPSMYEYFHGAVWQRKKLPFFRLMPRGPA
Ga0209523_10336271	3300027548	Forest Soil	PKDDPKSSEWRPYIFARDQRHCRICGDRFLYSEMVRKHIANEHNETMPPSMYEYFHGAVWQRKKLP
Ga0209523_10533303	3300027548	Forest Soil	MSDPKDDPKSSEWRPYVFARDQWHCRICGDRFLYSETVRKHIANGHNETMPPSMYEYFHGAVWQRKKLP
Ga0307307_100733561	3300028718	Soil	MPHPKDDPKSSEWRPYIFVRDQWHCRICGDRFLYSEMVRKHIADEHDENMPSSMYEYFRGAVWQRKKIS
Ga0307317_100730181	3300028720	Soil	MIFEMPHPKDDPKGPEWRPYIFARDQWHCRICGDRFLYSEMVRKHIADEHDENMPSSMYEYFRGAVWQRKKIS
Ga0307312_101370422	3300028828	Soil	MPQENPKSPEWRPYTFARHQWHCRICGDLFQYSETVRKHIAEAHDEDMPPSMYEYFRGAVWQRKKIP
Ga0318534_102520671	3300031544	Soil	MPIPKDDPKSPEWRPYIFAGDEWHCRICGDRLQYSESVRKHIAHAHDENIPPSMYEYFRGAVWQ
Ga0318538_103415591	3300031546	Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSETVRKRIANEHNETMPPSMYEYFHGAVWQRKKLP
Ga0310813_110860071	3300031716	Soil	HQRFAARRVDLQMPHPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFHGAVWQRKKLP
Ga0318546_107453751	3300031771	Soil	PKSSEWRPYMFARDQWHCRICGDRLLYSEMVRKHIANEHNETMPPSMYEYFHGAIWQRKKLP
Ga0306925_106864252	3300031890	Soil	MPDPKEDPKGSEWRPYVFARDQWHCRICGDRFLYSEMVRKHIANVHNETMPPSMYEYFHGAVWQRKKLP
Ga0306925_122367801	3300031890	Soil	MPDPKDDPKSSEWRPYSFAQDQWHCRICGDRFLYSEMVRKHIANEHNETMPPSIYEYFRGAVWQRKKLP
Ga0306925_122864561	3300031890	Soil	MREDDPKRSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANEHNEIMPPSMYEYFHGAVWQRKKVP
Ga0318522_101397601	3300031894	Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSEMVRKHIANKHNETMPPSMYGYFHGAVWQRKKLP
Ga0306923_108571253	3300031910	Soil	AQDLKMPNPKDDPKSPEWRPYIFAHDQWHCRICGDRFQYSEAVRKHVAHAHHENMPPSMYEYFRGAVWHRKKIP
Ga0310912_103351151	3300031941	Soil	MPDPKDDPKSSEWRPYIFARDQWHCRICGDRFLYSETVRKRIANEHNETMPPSMYEYF
Ga0310884_109296412	3300031944	Soil	STRIAAQALLQDLKMPHSKDDPKDPEWRPYIFVREQWHCRICGDRFQYSETVRIHIADAHDENMPPSMYEYFRGAVWQRNKIP
Ga0318533_101578653	3300032059	Soil	MPNPKDDPKSPEWRPYIFAHDQWHCRICGDRFQYSEAVRKHVAHAHHENMPPSMYEYFRGAVWHRKKIP
Ga0310914_102804931	3300033289	Soil	PKDDPKSPEWRPYIFAHDQWHCRICGDRFQYSEAVRKHVAHAHHENMPPSMYEYFRGAVWHRKKIP
Ga0310914_106517943	3300033289	Soil	WIIEMPDPKEDPKGSEWRPYVFARDQWHCRICGDRFLYSEMVRKHIANVHNETMPPSMYEYFHGAVWQRKKLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096934

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences