NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096890

Metagenome / Metatranscriptome Family F096890

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096890
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 51 residues
Representative Sequence MQEERLRLRALRVGALPILNHFIERMGLAAELTLALKNAGYADALLALIKN
Number of Associated Samples 84
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.885 % of family members)
Environment Ontology (ENVO) Unclassified
(39.423 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.962 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.
1ARSoilOldRDRAFT_0259722
2AF_2010_repII_A001DRAFT_101319482
3Ga0066396_100324603
4Ga0008090_143086581
5Ga0008090_144639411
6Ga0066903_1048686082
7Ga0066903_1073471871
8Ga0075028_1003297611
9Ga0075026_1004795723
10Ga0075017_1013919151
11Ga0075019_109976921
12Ga0075015_1004405763
13Ga0079221_103480111
14Ga0099792_109567832
15Ga0126374_111832221
16Ga0126380_103463681
17Ga0126384_105930581
18Ga0126384_110733071
19Ga0126384_123404662
20Ga0126373_116110602
21Ga0123356_126530341
22Ga0131853_112344251
23Ga0126370_105011753
24Ga0126370_121195391
25Ga0126370_125707901
26Ga0126376_118171181
27Ga0126376_129369902
28Ga0126372_116303381
29Ga0126372_118271252
30Ga0126379_104424273
31Ga0126379_118929753
32Ga0126381_1035675943
33Ga0126381_1045080081
34Ga0126381_1045911892
35Ga0137393_111495251
36Ga0137381_112120673
37Ga0126375_105941152
38Ga0126375_110067411
39Ga0126369_121800661
40Ga0137411_10861242
41Ga0182036_109882542
42Ga0182041_108233761
43Ga0182033_107348711
44Ga0182033_111076912
45Ga0182033_114408081
46Ga0182032_116467702
47Ga0182034_100742771
48Ga0182034_107418201
49Ga0182040_109550853
50Ga0182037_112551382
51Ga0182038_100208571
52Ga0187802_100880671
53Ga0187780_112835202
54Ga0187777_106163631
55Ga0187816_103741331
56Ga0187816_104510422
57Ga0187805_104529242
58Ga0187765_104332341
59Ga0187784_104978622
60Ga0179592_100560963
61Ga0213872_102174882
62Ga0210397_114550891
63Ga0126371_113206933
64Ga0126371_137651191
65Ga0213880_100987941
66Ga0257153_10669511
67Ga0207777_10653972
68Ga0209422_11295022
69Ga0209466_10465971
70Ga0209583_104432182
71Ga0307501_101987802
72Ga0170820_113189061
73Ga0318541_105715563
74Ga0318541_105797471
75Ga0310915_111096801
76Ga0318561_108361112
77Ga0318560_103327533
78Ga0306917_112680811
79Ga0318535_102500063
80Ga0318566_103321781
81Ga0318568_106383343
82Ga0307473_113504612
83Ga0310917_107957241
84Ga0318511_106142492
85Ga0318512_106827581
86Ga0318527_103824681
87Ga0318536_104849282
88Ga0310916_114500512
89Ga0310913_108113491
90Ga0310910_107091893
91Ga0310910_109052261
92Ga0310909_112170611
93Ga0318531_105917642
94Ga0306922_109588913
95Ga0306922_114875512
96Ga0318507_103305681
97Ga0318559_106064372
98Ga0318532_102724371
99Ga0318533_113187501
100Ga0318505_104303611
101Ga0318504_105514801
102Ga0318553_105174921
103Ga0307471_1027030532
104Ga0310914_111613982
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.23%    β-sheet: 0.00%    Coil/Unstructured: 41.77%
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Position

Original

Variant

5101520253035404550MQEERLRLRALRVGALPILNHFIERMGLAAELTLALKNAGYADALLALIKNSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Agricultural Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Tropical Peatland
Tropical Forest Soil
Forest Soil
Exposed Rock
Termite Gut
Rhizosphere
Arabidopsis Rhizosphere
Tropical Rainforest Soil
3.8%5.8%4.8%22.1%27.9%13.5%3.8%4.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ARSoilOldRDRAFT_02597223300000044Arabidopsis RhizosphereMQEERLRLRGLRVGALPILNRFIERMGLEEELTLALKNRGYADA
AF_2010_repII_A001DRAFT_1013194823300000793Forest SoilMQEERLRLRGLRVGALPILNHFIGRMGLEQELTLALRNTGY
Ga0066396_1003246033300004267Tropical Forest SoilMQEERLRLRGLRVGALPILNRFIERMGLEEELTLALKNRGYADALLALLKNIVVD
Ga0008090_1430865813300005363Tropical Rainforest SoilMQEENLRLHALRVGALPILNCIIERMGLAEELALALKSPGYAEVLLALTKNILVERN
Ga0008090_1446394113300005363Tropical Rainforest SoilVQEESLCLRAARVGALPILNHFIARIGLAEELTLALKNPGYA
Ga0066903_10486860823300005764Tropical Forest SoilMQEERLRLRGPRVGALPILHRFIERMELEQELTLALKNRGYWFTACA*
Ga0066903_10734718713300005764Tropical Forest SoilMQEERLRLRGLRVGALPILNRFIERMGLEEELTLALKNRGM*
Ga0075028_10032976113300006050WatershedsMQEEQLRLRGLRVGALPILNRFIERMGLEDELTLALKNPGYADALLALIKNILVERN
Ga0075026_10047957233300006057WatershedsMQEEQLRLRGLRVGALPILNRFIERMGLEEELIAALKNPGYTDALLALVKNILVERN
Ga0075017_10139191513300006059WatershedsMQEEQLRLRGLRVGGLPILNRFIERMGLEDELTLALKNPGYADALLALIKNI
Ga0075019_1099769213300006086WatershedsMQEEQLRLRGLRVGALPILNRFIERMGLEDELTLALKKPGYADAL
Ga0075015_10044057633300006102WatershedsMQEEQLRLRGLRVGALPILNRFIERMGLEDELTLALK
Ga0079221_1034801113300006804Agricultural SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAGYAEALLALVKN
Ga0099792_1095678323300009143Vadose Zone SoilMQEKNLRLRGVRVGALPILNDFSERMGLREEFTLALKNCDYADALLGLTKNILIDRNALY
Ga0126374_1118322213300009792Tropical Forest SoilMQEKRLRLRALRVGALPILNEFIERMGLEQELTLALKNSGYADALLA
Ga0126380_1034636813300010043Tropical Forest SoilMQEERLRLRALRVGALPILNRFIERLGLEEELTLALKNPGYAEALLALIKNILVDRNAIYAVGE*
Ga0126384_1059305813300010046Tropical Forest SoilMQEENLRLRALRVGALPILNCIIARMGLADELTLALKNP
Ga0126384_1107330713300010046Tropical Forest SoilMQEERLRLRGLRVGALPILNRFIERMGLEEELTLALKNRGYADALLALL
Ga0126384_1234046623300010046Tropical Forest SoilMQAESLSLRGFRVGAIPILNHFIARMGLDEELSLALQNPGYADALLALLKNIVV
Ga0126373_1161106023300010048Tropical Forest SoilMQQESLRLRALRVGALPILNQFIARMGLADELTLALKN
Ga0123356_1265303413300010049Termite GutMQQENLSLRALRVGALPILNSIIERMGVAEELTLALKNPTYVDALLALTKNMLADR
Ga0131853_1123442513300010162Termite GutMQAENLRLHALRVGALPILNCIIERMGLAEELALALKSSGYAE
Ga0126370_1050117533300010358Tropical Forest SoilMQEERLRLRALRVGALPILNHFIERMGLAAELTLALKNAGYADALLALIKNIVV
Ga0126370_1211953913300010358Tropical Forest SoilMQEENLRLRALRVGALPILNCIIERMGLAEELSLALKNPGYAEALLALIKNI
Ga0126370_1257079013300010358Tropical Forest SoilMQEKRLRLRALRVGALPILNEFIERMGLEQELTLALK
Ga0126376_1181711813300010359Tropical Forest SoilMQAESLSLRGFRVGAIPILNHFIARMGLDEELSLALKNPGYADALLALLKNIVVDRNALY
Ga0126376_1293699023300010359Tropical Forest SoilMQEERLRLRGPRVGALPILHRFIERMELEQELTLA*
Ga0126372_1163033813300010360Tropical Forest SoilMQEERLRLRALRVGALPILNHFIERMGLVAELTLALKNAGYADALLALIKNIVVERNALYAVG
Ga0126372_1182712523300010360Tropical Forest SoilMQEERLRLRALRVGALPILNHFIERMGLAAELTLALKNAGYADAL
Ga0126379_1044242733300010366Tropical Forest SoilMQGENLRLRALRVGALPILNCIIARIGLAEELSLALKNPGYAEALLALIKNILVERN
Ga0126379_1189297533300010366Tropical Forest SoilMQAESLSLRGFRVGAIPILNHFIARMGLDEELSLALTNPGYADALLALLKNIVVDRNALYAV
Ga0126381_10356759433300010376Tropical Forest SoilMQGESLRLRALRVGALPILNRIIARMGLAEELSLALKNPGYAEALLALIKNILVERN
Ga0126381_10450800813300010376Tropical Forest SoilMQEERLRLRGLRVGALPILNRFIERMGLEEELTLALKNRGYADALLALLKNIVVDRNALYAVGE
Ga0126381_10459118923300010376Tropical Forest SoilMQEENLHLHALRVGALPMLNCIIERMGLAEELALALQNPGYAEALLAL
Ga0137393_1114952513300011271Vadose Zone SoilMQEEKLRLRGLRVGALPIRNRFIERIGLEDELTLALKNPGYADALLALIKNI
Ga0137381_1121206733300012207Vadose Zone SoilMQERNLRLRGVRVGALPILNDFIERMGLREELTLALKNCDYADALLGL
Ga0126375_1059411523300012948Tropical Forest SoilRGLRVGALPILNRFIERMGLEEELTLALKNRGYADALLALLKGLRCLKWPT*
Ga0126375_1100674113300012948Tropical Forest SoilMQEEKLQLRALRIAALPIVNGFIERMGLEEELSAALKNPG
Ga0126369_1218006613300012971Tropical Forest SoilLRLHALRVGALPILDCIIERMALADELTLALKNSGYAEALLALIKNIL
Ga0137411_108612423300015052Vadose Zone SoilMQEEDLRLRGLRVGALPILNHFIERMGLAQELTLALKNCDYADALIGLSKNILIDRNA
Ga0182036_1098825423300016270SoilMQAQKFQLQALRVGALPILNRFIARMGIEEELALALKSAGYADALLALLKNI
Ga0182041_1082337613300016294SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKNILVDRNALYAVG
Ga0182033_1073487113300016319SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKNILVDRNAL
Ga0182033_1110769123300016319SoilMQEEKLRLHALRVGALPILNQFIARMGLADELTLALK
Ga0182033_1144080813300016319SoilMQEERLRLRALRVGTLPILNHFIERMGLAAELTLALKNAGYAEALLALIKNIV
Ga0182032_1164677023300016357SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKN
Ga0182034_1007427713300016371SoilMQEERLRLRALRVGALPILNHFIERMGLEQELTLALKNSGYADVLL
Ga0182034_1074182013300016371SoilMQEERLRLHALRVGALPILNQFIARMGLADELTLALKNAGYAE
Ga0182040_1095508533300016387SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALNNAG
Ga0182037_1125513823300016404SoilMQEERLRLRGLRVGALPILNHFIAHIGLAAELTLALKNAGYADALLALI
Ga0182038_1002085713300016445SoilMQEESLRLRALRVGALPILNQFIARMGLADELTLALKNA
Ga0187802_1008806713300017822Freshwater SedimentMQEESLRLRALRVGALPILNHFIDRMGLAAELTLALKNPSYADALL
Ga0187780_1128352023300017973Tropical PeatlandMQEERLRLRALRVGALPILNHFIERVGLAQELTLALNNAGYADALLALI
Ga0187777_1061636313300017974Tropical PeatlandMQEERLRLRALRVGALPILNHFIARMGLAAELTLALKNAGYADALLALMKNIVV
Ga0187816_1037413313300017995Freshwater SedimentMQEERLRLRALRVGALPILNHFMARMGLAAELTLALKNPGYADALLALIKNIVVERNALYAVGEW
Ga0187816_1045104223300017995Freshwater SedimentMQEESLRLRALRVGALPILNHFIDRMGLAAELTLALKNAGYADALLALIKNIVVER
Ga0187805_1045292423300018007Freshwater SedimentMQEERLRLRALRVGALPILNHFIARMGLAEELTLALKNAGYADALL
Ga0187765_1043323413300018060Tropical PeatlandMQEESLRLRALRVGALPILNHFIDRMGLAAELTLALKNPSYADALLALIKNIVVERNALYAVGE
Ga0187784_1049786223300018062Tropical PeatlandMQEERLRLRALRVGALPILNHFIDRMGLAAELTLALKNPSYADALLALIKNIVV
Ga0179592_1005609633300020199Vadose Zone SoilMQEEKLRLRGLRVGALPILNRFIERMGLEEELTLALKNPGYADALLALIKNILVERNALNAVGEWCTLR
Ga0213872_1021748823300021361RhizosphereMQKERYQLQDLRIGALPILNRFIERIGLEEELTLALRNAGYADALLALMKNILVDRNALYAISEWA
Ga0210397_1145508913300021403SoilMQAQKFQLQALRVGALPILNRFIARMGIEEELALALKNAGYAD
Ga0126371_1132069333300021560Tropical Forest SoilMQEERLRLRGLRVGALPILNRFIERMGLEEELTLALKNR
Ga0126371_1376511913300021560Tropical Forest SoilRLRLRGLRVGALPILNRFIERMGLEEELTLALKNRGM
Ga0213880_1009879413300021953Exposed RockMQEENLRLHALRVGALPILNCIIARMGLADELTLALKNPGYADALLALIKNILVERNA
Ga0257153_106695113300026490SoilMQEDKLRLRGLRVGALPILNRFIERIGLEDELTLALKNPGYADALLALIKNILVERNAL
Ga0207777_106539723300027330Tropical Forest SoilMQEERLRLRALRVGALPILNHFIERMGLAAELTLALKNAGYADALLALIKNIVVERNALYAV
Ga0209422_112950223300027629Forest SoilMQEEKLRLRGLRVGALPILNRFIERIGLEDELTLALKNP
Ga0209466_104659713300027646Tropical Forest SoilEERLRLRGPRVGALPILHRFIERMELEQELTLALKNRGYWFTACA
Ga0209583_1044321823300027910WatershedsMQEKNLRLRGLRVGALPILNDFIERMGLREELTIALRNFDYADALLGLIK
Ga0307501_1019878023300031152SoilMQEKNLRLRGVRVGALPILNDFIERMGLRDELTLA
Ga0170820_1131890613300031446Forest SoilMQEEKLRLRGLRVGALPILNRFIERIGLEDELTLALKNPGYADALLALIKNV
Ga0318541_1057155633300031545SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKN
Ga0318541_1057974713300031545SoilMQAQKFQLQALRVGALPILNRFIARMGIEEELALALKSAGY
Ga0310915_1110968013300031573SoilMQEERLRLRALRVGALPILNHFIARIGLAAELTLALKNAGYADALLALIKNIVVE
Ga0318561_1083611123300031679SoilMQKERYQLQDLRIGALPILNRFIERMGLEEGLTLALRNVGYADALLALMK
Ga0318560_1033275333300031682SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKNILVDRNALYAVGEWAAL
Ga0306917_1126808113300031719SoilMQKERYQLQDLRIGALPILNRFIERMGLEEELTLALRNAGYADALLALMKNILVDHNALYAISEWAALF
Ga0318535_1025000633300031764SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAGYAEALLALVKNIL
Ga0318566_1033217813300031779SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAG
Ga0318568_1063833433300031819SoilMQEERLRLHALRVGALPILNQFIARMGLADELTLALKNAGYAEAL
Ga0307473_1135046123300031820Hardwood Forest SoilMQKERYQLRGLRIGALPILNRFIERMGLEEELTLALRNAGYADALLALLKNILIERNALY
Ga0310917_1079572413300031833SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKNILVDRNALY
Ga0318511_1061424923300031845SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHY
Ga0318512_1068275813300031846SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAGYA
Ga0318527_1038246813300031859SoilMQEQNLRLRALRVGALPILNSIIERMGIAEELTLALKNPGYAEALLA
Ga0318536_1048492823300031893SoilMQEQNLRLRALRVGALPILNSIIERMGIAEELTLALKNPGYAEALLALIKNILVERNALYAIGEWAALY
Ga0310916_1145005123300031942SoilMQEERLRLRALRVGALPILNHFIERMGLEQELTLALKNSGYADVLLALLKNIV
Ga0310913_1081134913300031945SoilMQEERLRLRGLRVGALPILNHFIERMGLDEELTLALKNSGYADVLLALLKNIVV
Ga0310910_1070918933300031946SoilMQAQKFQLQALRVGALPILNRFIARMGIEEELALAL
Ga0310910_1090522613300031946SoilMQEERLRLRALRVGALPILNHFIERMGLAAELTLALKNAGYADALLALIKN
Ga0310909_1121706113300031947SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKNILVDRNRHE
Ga0318531_1059176423300031981SoilMQEQNLRLRALRVGALPILNSIIERMGIAEELTLALKNPG
Ga0306922_1095889133300032001SoilMQEERLRLRGLRVGALPILNHFIERMGLDEELTLALKNSGYADVLLALLKNIVVDRNALY
Ga0306922_1148755123300032001SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKNILVDRNALYAVGEWAALYD
Ga0318507_1033056813300032025SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAHYAEALLALVKNILVDRNALYAVGEWAALY
Ga0318559_1060643723300032039SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLAL
Ga0318532_1027243713300032051SoilMQAQKFQLQALRVGALPILNRFIARMGIEEELALALKSAGYADALLALLKNILVDRNALYAIGEWAE
Ga0318533_1131875013300032059SoilMQAQKFQLQALRVGALPILNRFIARMGIEEELALALKSAG
Ga0318505_1043036113300032060SoilMRVGALPILNHFIARIGLAAELTLALKNAGYADALLALIKNIVVERNALYAVGEWAALYDVGLVA
Ga0318504_1055148013300032063SoilMQEERLRLRALRVGALPILNHFIERMGLEQELTLALKNSGYADVL
Ga0318553_1051749213300032068SoilMQEERLRLRALRVGALPILNQFIARMGLADELTLALKNAGYAEALLA
Ga0307471_10270305323300032180Hardwood Forest SoilMQEEKLRLRGLRVGALPILNRFIERMGLEEELTLALKNPGYADALLALIKNILVERNA
Ga0310914_1116139823300033289SoilMQEQNLRLRALRVGALPILNSIIERMGIAEELTLALKNPGYAEALLALIKNI


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