Metagenome / Metatranscriptome Family F096855

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096855
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	72 residues
Representative Sequence	MAEVTISLRHQPASEEQPCGVCGAPFVPAEDSGSRVLGLKSGTQEFGFLMCGGCHSKWTHGATVRVRSMPA
Number of Associated Samples	79
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.04 %
% of genes near scaffold ends (potentially truncated)	25.96 %
% of genes from short scaffolds (< 2000 bps)	83.65 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.346 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.11% β-sheet: 23.23% Coil/Unstructured: 65.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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SCOP family	SCOP domain	Representative PDB	TM-score
g.39.1.12: Glucocorticoid receptor-like (DNA-binding domain)	d1uw0a_	1uw0	0.58
g.39.1.12: Glucocorticoid receptor-like (DNA-binding domain)	d1uw0a_	1uw0	0.58
d.190.1.3: Chorismate lyase-like	d2nwia1	2nwi	0.55
d.190.1.2: Chorismate lyase-like	d2pkha1	2pkh	0.55
c.60.1.0: Phosphoglycerate mutase-like	d4arua_	4aru	0.55
b.69.12.1: Sema domain	d6wvzm1	6wvz	0.55
d.190.1.3: Chorismate lyase-like	d2nwia1	2nwi	0.55
d.190.1.2: Chorismate lyase-like	d2pkha1	2pkh	0.55
c.60.1.0: Phosphoglycerate mutase-like	d4arua_	4aru	0.55
b.69.12.1: Sema domain	d6wvzm1	6wvz	0.55

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF12704	MacB_PCD	10.58
PF02687	FtsX	8.65
PF03551	PadR	7.69
PF00326	Peptidase_S9	5.77
PF03807	F420_oxidored	5.77
PF04972	BON	2.88
PF00246	Peptidase_M14	1.92
PF01989	AcnX_swivel_put	1.92
PF00141	peroxidase	1.92
PF00085	Thioredoxin	0.96
PF10518	TAT_signal	0.96
PF13366	PDDEXK_3	0.96
PF08241	Methyltransf_11	0.96
PF00069	Pkinase	0.96
PF00484	Pro_CA	0.96
PF07676	PD40	0.96
PF07589	PEP-CTERM	0.96
PF04237	YjbR	0.96
PF12706	Lactamase_B_2	0.96
PF13515	FUSC_2	0.96
PF09844	DUF2071	0.96
PF03544	TonB_C	0.96
PF00486	Trans_reg_C	0.96
PF13483	Lactamase_B_3	0.96
PF00856	SET	0.96
PF00034	Cytochrom_C	0.96
PF05193	Peptidase_M16_C	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	7.69
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	7.69
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	7.69
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.85
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	1.92
COG1786	Mevalonate 5-phosphate dehydratase subunit 2, swiveling domain (modified mevalonate pathway)	Lipid transport and metabolism [I]	1.92
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.96
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.96
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.35 %
Unclassified	root	N/A	8.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.35 %
Unclassified	root	N/A	8.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.35 %
Unclassified	root	N/A	8.65 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	46.15 %
Unclassified	root	N/A	8.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.77 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	38.46 %
Unclassified	root	N/A	8.65 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.81 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	8.65 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.81 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	1.92 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	8.65 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.81 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	8.65 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1.92 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.46 %
Unclassified	root	N/A	8.65 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1.92 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8975851	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
2170459006\|GBPF9FW01BEAFA	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14085065	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300003987\|Ga0055471_10185534	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300003999\|Ga0055469_10243967	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300004114\|Ga0062593_100193069	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300004114\|Ga0062593_101902062	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300004114\|Ga0062593_102583160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300004157\|Ga0062590_101471801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300004463\|Ga0063356_100000822	All Organisms → cellular organisms → Bacteria	22002	Open in IMG/M
3300004463\|Ga0063356_103991868	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	635	Open in IMG/M
3300004463\|Ga0063356_104110577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	626	Open in IMG/M
3300005434\|Ga0070709_11349277	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005436\|Ga0070713_100053586	All Organisms → cellular organisms → Bacteria	3343	Open in IMG/M
3300005436\|Ga0070713_101102903	Not Available	767	Open in IMG/M
3300005518\|Ga0070699_100016525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	6335	Open in IMG/M
3300005530\|Ga0070679_100608324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1036	Open in IMG/M
3300005534\|Ga0070735_10019043	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4986	Open in IMG/M
3300005561\|Ga0066699_10899281	Not Available	618	Open in IMG/M
3300005764\|Ga0066903_101081916	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300005764\|Ga0066903_102318879	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1037	Open in IMG/M
3300005764\|Ga0066903_103338363	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300006028\|Ga0070717_10214809	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1689	Open in IMG/M
3300006806\|Ga0079220_10874633	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300006854\|Ga0075425_100128792	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2893	Open in IMG/M
3300006876\|Ga0079217_10001734	All Organisms → cellular organisms → Bacteria → Proteobacteria	5972	Open in IMG/M
3300006903\|Ga0075426_11115770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300006914\|Ga0075436_100024135	All Organisms → cellular organisms → Bacteria	4180	Open in IMG/M
3300006914\|Ga0075436_101152599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300007004\|Ga0079218_10420502	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300007004\|Ga0079218_10880807	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300009093\|Ga0105240_10402432	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300009153\|Ga0105094_10021831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3473	Open in IMG/M
3300009153\|Ga0105094_10096043	All Organisms → cellular organisms → Bacteria → Proteobacteria	1669	Open in IMG/M
3300009789\|Ga0126307_11256765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300010359\|Ga0126376_10923223	Not Available	865	Open in IMG/M
3300010937\|Ga0137776_1305360	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300012206\|Ga0137380_10570807	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300012207\|Ga0137381_11056133	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300012354\|Ga0137366_11162508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300012964\|Ga0153916_10288632	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300013104\|Ga0157370_11761872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300014267\|Ga0075313_1198317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300015371\|Ga0132258_12743686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1228	Open in IMG/M
3300015374\|Ga0132255_104472182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300016445\|Ga0182038_10735319	Not Available	861	Open in IMG/M
3300018422\|Ga0190265_10610369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1210	Open in IMG/M
3300018422\|Ga0190265_11002812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300018432\|Ga0190275_10839602	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300020070\|Ga0206356_10754676	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300021560\|Ga0126371_13070452	Not Available	565	Open in IMG/M
3300021560\|Ga0126371_13895015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300022467\|Ga0224712_10111054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1176	Open in IMG/M
3300025324\|Ga0209640_10152380	All Organisms → cellular organisms → Bacteria	1979	Open in IMG/M
3300025906\|Ga0207699_10418287	Not Available	957	Open in IMG/M
3300025921\|Ga0207652_10505766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1088	Open in IMG/M
3300025924\|Ga0207694_10678379	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300025928\|Ga0207700_11923394	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300025944\|Ga0207661_11340247	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300026116\|Ga0207674_11463399	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300027636\|Ga0214469_1008786	All Organisms → cellular organisms → Bacteria → Proteobacteria	3610	Open in IMG/M
3300027691\|Ga0209485_1010800	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300027713\|Ga0209286_1175688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300027731\|Ga0209592_1158399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300027886\|Ga0209486_11289398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300027986\|Ga0209168_10029437	All Organisms → cellular organisms → Bacteria	3042	Open in IMG/M
3300028587\|Ga0247828_10006319	All Organisms → cellular organisms → Bacteria	4196	Open in IMG/M
3300030006\|Ga0299907_10015240	All Organisms → cellular organisms → Bacteria → Proteobacteria	5649	Open in IMG/M
3300030006\|Ga0299907_10343090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1211	Open in IMG/M
3300030006\|Ga0299907_10984545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300030006\|Ga0299907_11173912	Not Available	553	Open in IMG/M
3300031228\|Ga0299914_10031380	All Organisms → cellular organisms → Bacteria	4431	Open in IMG/M
3300031228\|Ga0299914_10054128	All Organisms → cellular organisms → Bacteria	3433	Open in IMG/M
3300031228\|Ga0299914_10215149	All Organisms → cellular organisms → Bacteria → Acidobacteria	1703	Open in IMG/M
3300031228\|Ga0299914_10474363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300031228\|Ga0299914_11266289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300031229\|Ga0299913_10300032	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300031547\|Ga0310887_10888292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300031548\|Ga0307408_100245318	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300031548\|Ga0307408_101348302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300031548\|Ga0307408_101921731	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031564\|Ga0318573_10063311	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
3300031716\|Ga0310813_10977916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300031731\|Ga0307405_12097313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300031781\|Ga0318547_10331433	Not Available	927	Open in IMG/M
3300031824\|Ga0307413_11498040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300031901\|Ga0307406_10189895	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300031901\|Ga0307406_11853552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300031903\|Ga0307407_10801953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300031903\|Ga0307407_11490219	Not Available	535	Open in IMG/M
3300031908\|Ga0310900_11084672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300031911\|Ga0307412_11381393	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	637	Open in IMG/M
3300031938\|Ga0308175_100211357	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300031996\|Ga0308176_10432138	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300032001\|Ga0306922_11216103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300032002\|Ga0307416_102800773	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300032002\|Ga0307416_102934341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300032003\|Ga0310897_10630594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300032005\|Ga0307411_10384691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1155	Open in IMG/M
3300032261\|Ga0306920_102903828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300033412\|Ga0310810_10002186	All Organisms → cellular organisms → Bacteria	20836	Open in IMG/M
3300033475\|Ga0310811_10107208	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3607	Open in IMG/M
3300033475\|Ga0310811_10205988	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300033550\|Ga0247829_10945252	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.00%
Host-Associated	Host-Associated	25.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.31%
Plants	Host-Associated → Plants	25.00%
Aquatic	Environmental → Aquatic	7.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.23%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.77%
Freshwater	Environmental → Aquatic → Freshwater	4.81%
Marine	Environmental → Aquatic → Marine	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.23%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.23%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.73%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	6.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.81%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.96%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_03152010	2088090015	Soil	MAEVTMSLKHLPDTREQACSVCGASFIAAEDSGSRLLGLKSGPQEFTFLMCGGCHSKWAHGTTVRMKSVPA
L01_01899030	2170459006	Grass Soil	MAAVTISLKHQPASEEQTCGVCGAAFIPVEDSGSRVLGLKSGTQEFAFLMCGGCHSKWTHGATVTVRSMQPV
ICChiseqgaiiFebDRAFT_140850652	3300000363	Soil	MAEVTISLRHAPDAEEQVCGICGATFVPGEDSGSRILGLKSGAQEFGFLMCGGCYSKWTHGATVRVRSMR*
Ga0055471_101855342	3300003987	Natural And Restored Wetlands	MAEVTISLKHQPSGDEQVCGVCRAAFVPAEDSGSRVLGLKTGPQEFTFVMCGGCHSKWSHGAAVRIRSAPA*
Ga0055469_102439672	3300003999	Natural And Restored Wetlands	MAEVTISLRHQPDFGELPCGVCGSPFIAAEDSGSRVLGLKSGAQEFSFLMCGGCHSKWVHGTS
Ga0062593_1001930692	3300004114	Soil	MAELTISLKHHPASDELPCGVCGATFIPGEDSGSRVLDVKSGTQAFGFLMCGGCHSKWVHGAVVKVRSMPPSGA*
Ga0062593_1019020622	3300004114	Soil	MAEVTISLRHAPESAEQACGICGATFVPAEDSGSRILGLKSGSQEFGFLMCGGCHSKWTHGATVKIRSRS*
Ga0062593_1025831602	3300004114	Soil	MAEVTISLRHDAAADERPCGVCGALFIPAEDSGSRVLGLKSGTQEFGFLLCGGCHSKWSHGATVTVRSMPTPARG*
Ga0062590_1014718012	3300004157	Soil	MAEVTISLKGHREPGEYTCGVCGSQFPPSEDSGSRVLGLKSGSQEFSFLMCGGCYSKWSHGATVRIRSMNG*
Ga0063356_10000082215	3300004463	Arabidopsis Thaliana Rhizosphere	MAEVTMSLKHLPDTREQACSVCGASFIAAEDSGSRLLGLKSGPQEFTFLMCGGCHSKWAHGTTVRMKSVPA*
Ga0063356_1039918681	3300004463	Arabidopsis Thaliana Rhizosphere	MAEVTISLRHAPEPAEQACGICGATFVPAEDSGSRVLGLKSGSQEFAFLMCGGCHSKWTHGATVRIRSRS*
Ga0063356_1041105772	3300004463	Arabidopsis Thaliana Rhizosphere	TLTEMAEVTMSLKHVPSNDEQPCGVCGAAFVPGEDSGSRVLWLKSGSQEFSFLLCGGCHSKWSHGGAVRMRSASTT*
Ga0070709_113492772	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MASVTISLRHQPAAEEQPCGVCGAAFVPAEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGATVSVRLMVA*
Ga0070713_1000535862	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MASVTISLRHQPAAEEQPCGVCGAAFVPAEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGATVSVRSMVA*
Ga0070713_1011029032	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MASVTVSLRHQPASDEQPCGVCGAAFVPSEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGTSVTVRSMPA*
Ga0070699_1000165259	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAEITIGLLHRPTPDEQPCGVCGARFIPGEDSGSRVLTLTSGTQDFSFLMCGGCHSKWSHGATVRIRSVPPGV*
Ga0070679_1006083242	3300005530	Corn Rhizosphere	MAEVTISLRHDAAADERPCGVCGALFIPAEDSGSRVLGLKSGTQEFGFLLCGGCHSKWSH
Ga0070735_100190434	3300005534	Surface Soil	MAAVTIALRHRPAPEELPCGVCGAAFVPAEDSGSRVLDLKSGAQEFSFLMCGGCHSKWTHGATVTVRSMPA*
Ga0066699_108992811	3300005561	Soil	MAEVTISLRHQPASDEQPCGVCGAAFVPAEDSGSRVLGLKSGAQEFRFLMCGGCHSKWTHGATVRIRSMPV*
Ga0066903_1010819162	3300005764	Tropical Forest Soil	MASVTISLRHQAAPEEQPCGVCGAAFVPAEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGSIVSVRSMAA*
Ga0066903_1023188792	3300005764	Tropical Forest Soil	MASVTISLRHQPATEEQPCGVCGASFIPAEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGAIVSVRSIAA*
Ga0066903_1033383631	3300005764	Tropical Forest Soil	MASVTISLRHQPAPGEQSCGVCGASFIPEEDSGSRVLGLKSGTQEFAFLLCGGCHSKWTHGATVTVRSMPAP*
Ga0070717_102148092	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MASVTISLRHQPAAEDQPCGVCGAAFVPAGDSGSRVLGLKSGTQEFFFLMCGGCHSKWAHGAVVTVRSQTA*
Ga0079220_108746332	3300006806	Agricultural Soil	MASVTISLRHQPTPEEQPCGVCGAVFVPAEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGAIFSVRSMAA*
Ga0075425_1001287922	3300006854	Populus Rhizosphere	MASVTISLRHQPAHEEQPCGVCGALFVPAEDSGSHVLGLKSGAQEFFFLMCGGCHSKWMHGAVVTVRSQAA*
Ga0079217_100017343	3300006876	Agricultural Soil	MHPRYHASVAEVTVSLKHHPAADEQPCGACGAAFIPVEDSGSRVLGLKSGAQEFAFLMCGGCHSKWVHGNSLRLRSMPPV*
Ga0075426_111157702	3300006903	Populus Rhizosphere	MAEITIGLLHRPSPDEQPCGVCGARFIPGEDSGSRVLALTSGTQDFSFLMCGGCHSKWSHGATVRIRSVPSGV*
Ga0075436_1000241353	3300006914	Populus Rhizosphere	MASVTISLRHQPAPEEQPCGVCGAVFVPAEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGAIFSVRSMAA*
Ga0075436_1011525992	3300006914	Populus Rhizosphere	ACEYTGRMAEITIGLVHRPTPDEQPCGVCGARFIPGEDSGSRVLALTSGTQDFSFLMCGGCHSKWSHGATVRIRSVPSGV*
Ga0079218_104205022	3300007004	Agricultural Soil	MAEVTISLKHHPAAEEQSCGVCGASFVAAEDSGSRVFGLKSGAQEFAFLMCGGCHSKWAHGSTVRIRSTPTS*
Ga0079218_108808072	3300007004	Agricultural Soil	MAEVTMSLKHLPETREQTCGVCGASFVAAEDSGSRMLGLKSGPQEFTFLMCGGCHSKWAHGTTVRMKSVPA*
Ga0105240_104024322	3300009093	Corn Rhizosphere	MAEVTISLKHQPAAEELACGVCGAAFIPVEDAGSRVLGLKSGTQEFGFLMCGGCHSKWTHGAVVRIRSMPAPAGA*
Ga0105094_100218312	3300009153	Freshwater Sediment	MAEVTISLRHQPESAEQTCGVCGAAFIAAEDSGSRVLGLKSGAQDFAFLMCGGCHSKWSHGSALRIRSIPTT*
Ga0105094_100960433	3300009153	Freshwater Sediment	MAEVTVSLTHRPITDEQPCGVCGASFCPTEDSVSRVLGLKSGQQEFAFLMCGGCHSKWTHGSTVTVRSMRP*
Ga0126307_112567652	3300009789	Serpentine Soil	MAEVTISLRHAPEAGERSCGVCGASFVPQEDSGSRVLGLKSGAQEFGFLMCGGCHSKWMHGATVRIRSMG*
Ga0126376_109232232	3300010359	Tropical Forest Soil	MASVTVSLRHQPATEEQPCGVCGAAFVPAEDSGSRVLGLKSGPQEFFFLMCGGCHSKWTHGAIVSVRSMTA*
Ga0137776_13053602	3300010937	Sediment	MAAVTISLRHHPAPEEQACGVCGAPFIPVEDSGSRVLGLKSGTQEFAFLMCGGCHSKWSHGATVTVRSMNAA*
Ga0137380_105708072	3300012206	Vadose Zone Soil	MAEVTISLRHQPASEEQPCGVCGAPFVPAEDSGSRVLGLKSGTQEFGFLMCGGCHSKWTHGATVRVRSMPV*
Ga0137381_110561332	3300012207	Vadose Zone Soil	MAEVTISLRHQPASEEQPCGVCGAPFVPAEDSGSRVLGLKSGTQEFGFLMCGGCHSKWTHGATVRVRSMPA*
Ga0137366_111625081	3300012354	Vadose Zone Soil	ISLRHQPASEEQPCGVCGAAFIPAEDSGSRVLGLKSGTQEFGFLMCGGCHSKWTHGTTVRVRSMPA*
Ga0153916_102886323	3300012964	Freshwater Wetlands	MAEVTVSLRHHPAAEELTCGVCGAAFVPVEDSGSRVLGLKSGTQDFSFLMCGGCHSKWTHGAAVKIRSMPA*
Ga0157370_117618722	3300013104	Corn Rhizosphere	MAEVTISLRHDAAADERPCGVCGALFIPAEDSGSRVLGLKSGTQEFGFLLCGGCHSKWSHGATVTVRSVAAPARG*
Ga0075313_11983172	3300014267	Natural And Restored Wetlands	MAEVTISLKHQPSGDEQVCGVCRAAFVPAEDSGSRVLGLKTGPQEFTFVMCGGCHSKWSHGAAVRVRSAPA*
Ga0132258_127436862	3300015371	Arabidopsis Rhizosphere	MADVTISLRHQPAPDEQPCGVCGAPFIPAEDSGSRVLGLRSGNQEFAFLLSGGCHSKWTHGTTVRIRSMP*
Ga0132255_1044721821	3300015374	Arabidopsis Rhizosphere	MAEVTVSLRHLAANDERECGVCGAAFVPSEDSGSRVLGLKSGAQEFSFLLCGGCHSKWVHGAVTRVRSMPIATGTGS*
Ga0182038_107353192	3300016445	Soil	MASVTISLRHQPATEEQPCGVCGAAFVPGEDSGSRVLGLKSGAQEFFFLMCGGCHSK
Ga0190265_106103691	3300018422	Soil	THRMAEVTLSLRHHPTAAEQRCGVCTASFVAAEDSGSRVLGLKTGSQDFSFLMCGGCHSKWSHGTTIRIRSIPGD
Ga0190265_110028121	3300018422	Soil	MAEVTLSLRHHPAADEQVCGVCGASFVAAEDSGSRVLGLKTGSQEFSFLMCGGCHSKWSHGTTIRIRSSPTA
Ga0190275_108396022	3300018432	Soil	MAEVTISLKHHPSNDELTCGACGASFVAAEDSGSRVLGLKSGQQEFAFLMCGGCHSKWAHGTTVRVQSMRTPIPAK
Ga0206356_107546763	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MAEVTISLRHDAAADERPCGVCGALFIPAEDSGSRVLGLKSGTQEFGFLLCGGCHSKWSHGATVTVRSMPTPARG
Ga0126371_130704522	3300021560	Tropical Forest Soil	MASVTISLRHQPANEEQPCGVCGAAFVPGEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGVAVSVRSMPA
Ga0126371_138950151	3300021560	Tropical Forest Soil	APQGDHAVHRREKDYTKRMAELTISLRHQPSDSQMFCGVCGANFIPVEDSGSRLLGLKSGTQEFDFLLCGGCHSKWAHGAIMRIRSLPVNTASSTSPQAT
Ga0224712_101110541	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	TISLRHDAAADERPCGVCGALFIPAEDSGSRVLGLKSGTQEFGFLLCGGCHSKWSHGATVTVRSMPTPARG
Ga0209640_101523802	3300025324	Soil	MTISLEHQAAADERPCGVCGATFVAAEDSGSRVLGVKTATQALSFLMCGGCHSKWSHGVPVRIRSAPAS
Ga0207699_104182872	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MASVTISLRHQPAAEEQPCGVCGAAFVPAEDSGSRVLGLKSGAQEFFFLM
Ga0207652_105057662	3300025921	Corn Rhizosphere	MAEVTISLRHDAAADERPCGVCGALFIPAEDSGSRVLGLKSGTQEFGFLLCGGCHSKWSHGA
Ga0207694_106783791	3300025924	Corn Rhizosphere	MAEVTISLKHQPAAEELACGVCGAAFIPVEDAGSRVLGLKSGTQEFGFLMCGGCHS
Ga0207700_119233942	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DARVQGILAIMASVTISLRHQPASEEQSCGVCGASFIPVEDSGSRMLGLKSGTQEFSFLMCGGCHSKWTHGATVTIRSVRT
Ga0207661_113402471	3300025944	Corn Rhizosphere	MAEVTISLKHQPAAEELACGVCGAAFIPVEDAGSRVLGLKSGTQEFGFLMCGGCHSKWTHGAVVRIRSMPAPAGA
Ga0207674_114633991	3300026116	Corn Rhizosphere	TLKVMAEVTISLKHQPAAEELACGVCGAAFIPVEDAGSRVLGLKSGTQEFGFLMCGGCHSKWTHGAVVRIRSMPAPAGA
Ga0214469_10087862	3300027636	Soil	MAFGDCHIRVHCAMAEVTISLKHQPASDEQPCGVCGAPFIPDEDSGSRVLGLKTGTQEFAFMMCGGCHSKWSHGTPVRIRSAPA
Ga0209485_10108003	3300027691	Agricultural Soil	MHPRYHASVAEVTVSLKHHPAADEQPCGACGAAFIPVEDSGSRVLGLKSGAQEFAFLMCGGCHSKWVHGNSLRLRSMPPV
Ga0209286_11756882	3300027713	Freshwater Sediment	MAEVTISLRHQPESAEQTCGVCGATFIAAEDSGSRVLGLKSGAQDFAF
Ga0209592_11583991	3300027731	Freshwater Sediment	MAEVTISLRHQPESAEQTCGVCGATFIAAEDSGSRVLGLKSGAQDFAFLMCGGCHSKWSHGSAVRIRSIPAI
Ga0209486_112893981	3300027886	Agricultural Soil	MAEVTMSLKHLPETREQTCGVCGASFVAAEDSGSRMLGLKSGPQEFTFLMCGGCHSKWAHGTTVRMKSVPA
Ga0209168_100294372	3300027986	Surface Soil	MAAVTIALRHRPAPEELPCGVCGAAFVPAEDSGSRVLDLKSGAQEFSFLMCGGCHSKWTHGATVTVRSMPA
Ga0247828_100063192	3300028587	Soil	MAEVTISLRHAPESAEQACGICGATFVPAEDSGSRILGLKSGSQEFGFLMCGGCHSKWTHGATVKIRSRS
Ga0299907_100152407	3300030006	Soil	MAEVTISLKHQPAAEEQSCGVCGASFVAAEDSGSRVLGLKSGAQEFAFVMCGGCHSKWSHGATVRIRSAATS
Ga0299907_103430902	3300030006	Soil	MAEVTISLRHHPAREEQPCGVCGAPFVAAEDSGSRMLGLKTGSQDFSFLMCGGCHSKWTHGHAVRIRSMPA
Ga0299907_109845452	3300030006	Soil	MAEVTISLRHHPVRDERPCGVCGASFVAAEDSGSRMLGLKTGSQDFTFLMCGGCHSKWSHGHAVRIRSMPES
Ga0299907_111739121	3300030006	Soil	MAEVTISLKHQPAAEEQSCGVCGASFVAAEDSGSRVLGLKSGAQEFAFVMCGGCHSKWSH
Ga0299914_100313803	3300031228	Soil	MAEVTISLRHHPAAEEQTCGVCGAVFVSAEDSGSRILGLKSGPQDFTFLLCGGCHSKWAHGTSVRVRSMPA
Ga0299914_100541282	3300031228	Soil	MAEVTITLKHQPASEDQRCGVCAETFVPAEDSGSRVLGLKTGSQEFAFVMCGGCHSKWSHGTTVRIRSAPA
Ga0299914_102151493	3300031228	Soil	MAEVTISLRHHPVRDERPCGVCGASFVAAEDSGSRMLGLKTGSQDFTFLLCGGCHSKWSHGHAVRIRSMPES
Ga0299914_104743632	3300031228	Soil	MAEVTISLKHQPASDEQSCGVCGAPFIPVEDSGSRVLGLKTGTQEFAFMMCGGCHSKWSHGTPVRIRSAPA
Ga0299914_112662892	3300031228	Soil	MADVTITLKHQPASEQQRCGVCAATFVPAEDSGSRVLGLRTGTQEFAFVMCGGCHSKWSHGTTVKIRSAPA
Ga0299913_103000323	3300031229	Soil	MAEVTISLKHQPASDEQPCGVCGAPFIPVEDSGSRVLGLKTGSQEFAFMMCGGCHSKWSHGTPVRIRSVPA
Ga0310887_108882922	3300031547	Soil	MAEVTISLRHAPESAEQACGICGATFVPAEDSGSRILGLKSGSQEFGFLMCGGCHSKW
Ga0307408_1002453182	3300031548	Rhizosphere	MPHNPECDEWWDRTRLRRYTSCMAEVTISLRHTPERDERPCGVCGASFVPAEDSGSRLFGLKSGAQEFAFLMCGGCHSKWTHGASVRIRSMS
Ga0307408_1013483021	3300031548	Rhizosphere	MAEVTISLRHHPETEEQTCGVCRAAFVAAEDSGSRVFGLKSGPQEFSFLMCGGCHSKWAHGTSVRVQSMPVPPGTK
Ga0307408_1019217311	3300031548	Rhizosphere	MAEVTISLKHLAAAHEQSCGVCGASFVAAEDSGSRVLGLKSGAQEFSFLMCGGCHSKWSHGSTVKIQSLPPA
Ga0318573_100633113	3300031564	Soil	MASVTISLRHQPATEEQPCGVCGAAFVPGEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGAIVSVRSMVA
Ga0310813_109779162	3300031716	Soil	VSQVAVTGRCGYTGVMADVTISLRHQPAPDEQPCGVCGAPFIPAEDSGSRVLGLRSGNQEFAFLLCGGCHSKWTHGTTVRIRSMP
Ga0307405_120973131	3300031731	Rhizosphere	YTPWMAEVTISLKGHREPGEYTCGVCGSQFPPSEDSGSRVLGLKSGSQEFSFLMCGGCYSKWSHGATVRIRSMNG
Ga0318547_103314331	3300031781	Soil	MASVTISLRHQPATEEQPCGVCGAAFVPGEDSGSRVLGLKSGAQEFFFLMCGGCHSKWTHGAIVSV
Ga0307413_114980402	3300031824	Rhizosphere	RVRYTPWMAEVTISLKGHREPGEYTCGVCGSQFPPSEDSGSRVLGLKSGSQEFSFLMCGGCYSKWSHGATVRIRSMNG
Ga0307406_101898952	3300031901	Rhizosphere	MAEVTISLRHTPERDERPCGVCGASFVPAEDSGSRLFGLKSGAQEFAFLMCGGCHSKWTHGASVRIRSMS
Ga0307406_118535521	3300031901	Rhizosphere	MAEVTISLKHHPATDDLTCGVCGASFVAAEDSGSRVLGLKSGAQEFAFLMCGGCHSKWTHGATVRIQSMRESSPAK
Ga0307407_108019532	3300031903	Rhizosphere	MAEVTISLKHHPATDDLTCGVCGASFVAAEDSGSRVLGLKSGAQEFAFLMCGGCHSKWAHGSTVRIQSMRESSPAK
Ga0307407_114902192	3300031903	Rhizosphere	MAEVTISLKGHREPGEYTCGVCGSQFPPSEDSGSRVLGLKSGSQEFSFLMCGGCYSKWLHGATVRIRSMNG
Ga0310900_110846722	3300031908	Soil	MAEVTISLRHAPESADQACGICGATFVPAEDSGSRILGLKSGSQEFAFLMCGGCHSKWTHGATVKIRSRS
Ga0307412_113813931	3300031911	Rhizosphere	VGWRRRYTAEMAEVTISLRHAPEPAEQTCGVCGAPFIPAEDSGSRILGLRSGPQEFGFLMCGGCHSKWAHGATVRIRSMS
Ga0308175_1002113572	3300031938	Soil	MRRSGYTGEMAEVTVSLRHDPAADERACGVCGALFVPAEDSGSRVLGLKSGTQEFEFLLCGGCHSKWSHGAVVKVRSMTTRAGA
Ga0308176_104321382	3300031996	Soil	MAELTISLKHQPAADELTCGVCSATFIPVEDSGSRVLDVKSGAQAFAFLMCGGCHSKWVHGAVVKVRSMPAPTGA
Ga0306922_112161031	3300032001	Soil	MAELTISLQHQPSDSQMFCGVCGASFIPVEDSGSRILGLKSGAQEFDFLLCGGCHSKWAHGAIMRIRSLPVNAASSSSPQAT
Ga0307416_1028007732	3300032002	Rhizosphere	MAEVTISLRHAPEPAEQTCGVCGAPFIPAEDSGSRILGLKSGPQEFGFLMCGGCHSKWAHGATVRIRSMS
Ga0307416_1029343411	3300032002	Rhizosphere	MAEVTISLRHAPESAEQVCGICGATFVPAEDSGSRILGLKSGSQEFGFLMC
Ga0310897_106305942	3300032003	Soil	MAEVTISLRHAPESADQACGICGATFVPAEDSGSRILGLKSGSQEFAFLMCGGCHSKWTHGATVRI
Ga0307411_103846913	3300032005	Rhizosphere	MAEVTISLKGHREPGEYTCGVCGSQFPPSEDSGSRVLGLKSGSQEFSFLMCGGCYSKWSHGATVRIRSMNG
Ga0306920_1029038282	3300032261	Soil	MVLRLSLILILQGILAVMASVTLSLRHQPANEEQPCGVCGAAFVPAEDSGSRILGLKSGAQEFFFLLCGGCHSKWTHGVAVSVRSMPA
Ga0310810_100021862	3300033412	Soil	VTGRCGYTGVMADVTISLRHQPAPDEQPCGVCGAPFIPAEDSGSRVLGLRSGNQEFAFLLCGGCHSKWTHGTTVRIRSMP
Ga0310811_101072081	3300033475	Soil	MADVTISLRHQPAPDEQPCGVCGAPFIPAEDSGSRVLGLRSGNQEFAFLLCG
Ga0310811_102059881	3300033475	Soil	PAPDEQPCGVCGAPFIPAEDSGSRVLGLRSGNQEFAFLLCGGCHSKWTHGTTVRIRSMP
Ga0247829_109452521	3300033550	Soil	MAEVTMSLKHLPETHEQLCGVCGASFVAAEDSGSRMLGLKSGPQEFSFLMCGGCHSKWAHGATLRMKSVPV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096855

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences