Metagenome Family F096827

Overview

Basic Information

• Family ID: F096827
• Family Type: Metagenome
• Number of Sequences: 104
• Average Sequence Length: 54 residues
• Representative Sequence: MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAAKRAA
• Number of Associated Samples: 54
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 84.62 %
• % of genes near scaffold ends (potentially truncated): 27.88 %
• % of genes from short scaffolds (< 2000 bps): 84.62 %
• Associated GOLD sequencing projects: 47
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (52.885 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (31.731 % of family members)
• Environment Ontology (ENVO): Unclassified (66.346 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (69.231 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 21.69%
  β-sheet: 21.69%
  Coil/Unstructured: 56.63%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01717	Meth_synt_2	13.46
PF04226	Transgly_assoc	6.73
PF04126	Cyclophil_like	5.77
PF13594	Obsolete Pfam Family	4.81
PF01436	NHL	2.88
PF00294	PfkB	1.92
PF00923	TAL_FSA	1.92
PF00528	BPD_transp_1	1.92
PF13193	AMP-binding_C	0.96
PF07883	Cupin_2	0.96
PF13147	Obsolete Pfam Family	0.96
PF00158	Sigma54_activat	0.96
PF13416	SBP_bac_8	0.96
PF02265	S1-P1_nuclease	0.96
PF12706	Lactamase_B_2	0.96
PF02743	dCache_1	0.96
PF00378	ECH_1	0.96
PF01575	MaoC_dehydratas	0.96
PF01546	Peptidase_M20	0.96
PF04055	Radical_SAM	0.96
PF04392	ABC_sub_bind	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	13.46
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	6.73
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	1.92
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.96
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.88 %
Unclassified	root	N/A	47.12 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.88 %
Unclassified	root	N/A	47.12 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.88 %
Unclassified	root	N/A	47.12 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.12 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.54 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	4.81 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.12 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	4.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.12 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.12 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	4.81 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.12 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.81 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2032320006|FACEOR_FYWIORV02H1ZYY	Not Available	504
3300000559|F14TC_100468407	All Organisms → cellular organisms → Bacteria	845
3300000597|AF_2010_repII_A1DRAFT_10040032	Not Available	1243
3300004268|Ga0066398_10029179	Not Available	996
3300004268|Ga0066398_10189117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	537
3300004281|Ga0066397_10006166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1374
3300004633|Ga0066395_10372228	All Organisms → cellular organisms → Bacteria	799
3300004633|Ga0066395_10646791	Not Available	623
3300005093|Ga0062594_102279394	Not Available	588
3300005289|Ga0065704_10624319	All Organisms → cellular organisms → Bacteria	595
3300005332|Ga0066388_100008223	All Organisms → cellular organisms → Bacteria → Proteobacteria	7784
3300005332|Ga0066388_100060451	All Organisms → cellular organisms → Bacteria → Proteobacteria	4008
3300005332|Ga0066388_100125466	All Organisms → cellular organisms → Bacteria	3100
3300005332|Ga0066388_102288894	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	977
3300005332|Ga0066388_102452803	Not Available	947
3300005332|Ga0066388_106221414	Not Available	602
3300005332|Ga0066388_107380650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	552
3300005332|Ga0066388_108169383	Not Available	523
3300005332|Ga0066388_108571779	Not Available	509
3300005347|Ga0070668_100549143	All Organisms → cellular organisms → Bacteria	1005
3300005444|Ga0070694_100249028	All Organisms → cellular organisms → Bacteria	1343
3300005444|Ga0070694_100713733	Not Available	816
3300005444|Ga0070694_101063050	Not Available	674
3300005615|Ga0070702_100777699	All Organisms → cellular organisms → Bacteria → Proteobacteria	738
3300005713|Ga0066905_100009281	All Organisms → cellular organisms → Bacteria	4553
3300005713|Ga0066905_100136604	Not Available	1741
3300005713|Ga0066905_100232375	Not Available	1403
3300005713|Ga0066905_100349113	Not Available	1181
3300005713|Ga0066905_100381828	All Organisms → cellular organisms → Bacteria	1136
3300005713|Ga0066905_100554524	All Organisms → cellular organisms → Bacteria	965
3300005713|Ga0066905_100775761	Not Available	829
3300005713|Ga0066905_100886652	Not Available	779
3300005713|Ga0066905_101137146	Not Available	695
3300005713|Ga0066905_102162147	All Organisms → cellular organisms → Bacteria	518
3300005764|Ga0066903_100245769	All Organisms → cellular organisms → Bacteria	2752
3300005764|Ga0066903_101702563	Not Available	1201
3300005764|Ga0066903_102369409	All Organisms → cellular organisms → Bacteria	1026
3300005764|Ga0066903_102910222	Not Available	928
3300005764|Ga0066903_103921760	Not Available	798
3300005764|Ga0066903_104823528	All Organisms → cellular organisms → Bacteria	717
3300005843|Ga0068860_100281616	All Organisms → cellular organisms → Bacteria	1625
3300006049|Ga0075417_10014776	All Organisms → cellular organisms → Bacteria	3001
3300006049|Ga0075417_10071388	All Organisms → cellular organisms → Bacteria	1537
3300006058|Ga0075432_10086135	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1145
3300006844|Ga0075428_101133539	Not Available	825
3300006845|Ga0075421_102348689	Not Available	559
3300006853|Ga0075420_100371070	All Organisms → cellular organisms → Bacteria	1238
3300009100|Ga0075418_10812479	Not Available	1010
3300009100|Ga0075418_11871858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653
3300009553|Ga0105249_10531599	Not Available	1224
3300009792|Ga0126374_10027147	All Organisms → cellular organisms → Bacteria	2620
3300010043|Ga0126380_10102808	All Organisms → cellular organisms → Bacteria → Proteobacteria	1719
3300010043|Ga0126380_10594878	Not Available	870
3300010043|Ga0126380_11426868	Not Available	609
3300010046|Ga0126384_10321006	Not Available	1281
3300010046|Ga0126384_10636604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	938
3300010046|Ga0126384_10705407	All Organisms → cellular organisms → Bacteria	894
3300010047|Ga0126382_11302817	Not Available	657
3300010047|Ga0126382_11322151	Not Available	653
3300010047|Ga0126382_11965174	Not Available	555
3300010047|Ga0126382_11979333	Not Available	554
3300010048|Ga0126373_12808247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	543
3300010361|Ga0126378_10977247	Not Available	951
3300010362|Ga0126377_10820133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990
3300010362|Ga0126377_10963722	Not Available	918
3300010366|Ga0126379_10006817	All Organisms → cellular organisms → Bacteria → Proteobacteria	7736
3300010366|Ga0126379_10085630	All Organisms → cellular organisms → Bacteria	2749
3300010366|Ga0126379_10165015	All Organisms → cellular organisms → Bacteria	2085
3300010366|Ga0126379_10853261	Not Available	1012
3300010366|Ga0126379_12711386	Not Available	592
3300010366|Ga0126379_13486778	All Organisms → cellular organisms → Bacteria	527
3300010366|Ga0126379_13564185	Not Available	521
3300010398|Ga0126383_10157850	All Organisms → cellular organisms → Bacteria	2125
3300010398|Ga0126383_10250671	All Organisms → cellular organisms → Bacteria	1737
3300010398|Ga0126383_10859865	Not Available	992
3300010399|Ga0134127_12848584	Not Available	563
3300010403|Ga0134123_10461020	Not Available	1185
3300012948|Ga0126375_10097508	Not Available	1731
3300012948|Ga0126375_10467761	All Organisms → cellular organisms → Bacteria	931
3300012948|Ga0126375_11004332	Not Available	679
3300012948|Ga0126375_11170656	All Organisms → cellular organisms → Bacteria	638
3300012971|Ga0126369_10490967	All Organisms → cellular organisms → Bacteria	1284
3300012971|Ga0126369_12390339	All Organisms → cellular organisms → Bacteria	614
3300015371|Ga0132258_10138969	All Organisms → cellular organisms → Bacteria → Proteobacteria	5808
3300015371|Ga0132258_11235420	All Organisms → cellular organisms → Bacteria	1889
3300015372|Ga0132256_100458144	Not Available	1383
3300015374|Ga0132255_106281417	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	503
3300017792|Ga0163161_11629549	Not Available	570
3300025918|Ga0207662_10176026	All Organisms → cellular organisms → Bacteria	1375
3300027646|Ga0209466_1033667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1048
3300027654|Ga0209799_1049233	Not Available	942
3300027873|Ga0209814_10050062	All Organisms → cellular organisms → Bacteria	1743
3300027874|Ga0209465_10590218	Not Available	551
3300027907|Ga0207428_11290972	Not Available	506
3300028381|Ga0268264_10234018	All Organisms → cellular organisms → Bacteria	1698
3300028587|Ga0247828_10337532	All Organisms → cellular organisms → Bacteria	846
3300031543|Ga0318516_10005664	All Organisms → cellular organisms → Bacteria	5704
3300031720|Ga0307469_10224251	Not Available	1489
3300031740|Ga0307468_100029633	All Organisms → cellular organisms → Bacteria	2585
3300031740|Ga0307468_100067987	All Organisms → cellular organisms → Bacteria	1962
3300031747|Ga0318502_10021018	All Organisms → cellular organisms → Bacteria	3165
3300032001|Ga0306922_10035992	All Organisms → cellular organisms → Bacteria	5066
3300032063|Ga0318504_10533991	Not Available	562
3300032174|Ga0307470_10325237	Not Available	1055

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.77%
Host-Associated	Host-Associated	19.23%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.77%
Plants	Host-Associated → Plants	19.23%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.73%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.27%
Loam	Environmental → Terrestrial → Soil → Loam	37.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	31.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%

Habitat

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	31.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	29.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2032320006	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+	Environmental
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015372	Soil combined assembly	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORE_722450	2032320006	Soil	MEHKEVSMEHKKETFDAHEFLDLLGEVMDHDVTGVLNVRIHVRDGMAWAVSVQFNDAATRAA
F14TC_1004684072	3300000559	Soil	MEHEKEAFDARAFLDLLDEVVHHDVTGVLNVRIHVRDGMPWAVSVQFDNTAKKAA*
AF_2010_repII_A1DRAFT_100400322	3300000597	Forest Soil	MENEKEAFDGAGFFDLLGEVMTDHATGVVSVRIHVRDGMPWAVSVHFDKETEKAA*
Ga0066398_100291791	3300004268	Tropical Forest Soil	MDNEKRAFDSAGFFDLLGQVMTRHNTGVLSLRIHIRDGLPWAVSV
Ga0066398_101891171	3300004268	Tropical Forest Soil	MENEKKGFDGVAFFDLLGEVMTHHGTGVVSVRIHVRDGMPWAVSVHFDRETGKAA*
Ga0066397_100061661	3300004281	Tropical Forest Soil	MESEKKAFDSAGFFDLLGQVMTRHNTGVVSLRIHVRDGLPWAVSVDFERETGKAA*
Ga0066395_103722282	3300004633	Tropical Forest Soil	MDNEKRAFDSAGFFDLLGQVMTRHNTGVLSLRIHIRDGLPWAVSVDFDDTKEKAA*
Ga0066395_106467911	3300004633	Tropical Forest Soil	MEHEKEAFDAHAFLDLLDEVVHHDVTGVVNVRIHIRDGMPWAVSVQFDQKAA*
Ga0062594_1022793941	3300005093	Soil	MERKKEAFDAGGFLDLLSEVMDHEVTGVLNVQIHVRDGMAWAMSVHFNDAATRAA*
Ga0065704_106243191	3300005289	Switchgrass Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAAKRAA*
Ga0066388_1000082234	3300005332	Tropical Forest Soil	MDNEKRAFDSAGFFDLLGQVMTRHNTGVLSLRIHIRDGLPWAVSVDFDGTKEKAA*
Ga0066388_1000604512	3300005332	Tropical Forest Soil	MEPEKEAFDARAFLDLLGEVVHHEVTGVLNVRIHVRDGMPWAVSVQFDNTAKRAA*
Ga0066388_1001254663	3300005332	Tropical Forest Soil	MENEKKGFDGVAFFDLLGEVMTHHGTGVVSVRIHVRDGLPWAVSVHFDKETGKAA*
Ga0066388_1022888942	3300005332	Tropical Forest Soil	MEYETVAFDARGFLDLLTDVVHYEDTGVLNVRIHVRDGMPWAVSVQFDKAGKRAA*
Ga0066388_1024528032	3300005332	Tropical Forest Soil	MDNENEAFDGAGFFDLLGEVMTHHGTGVVSVRIHVRDGMPWAVSVHFDREAEKAA*
Ga0066388_1062214142	3300005332	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTYHATGVVSVRIHVRDGMPWAVSVHFDKEAEKAA*
Ga0066388_1073806502	3300005332	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTHHGTGVVSVRIHVRDGMPWAVSVHFDREAEKAA*
Ga0066388_1081693831	3300005332	Tropical Forest Soil	MDHENEAFDVHGFLDLLAEVVHHDVTGVVNVRIHVRDGLPWAVSVQFDDAGKRAA*
Ga0066388_1085717791	3300005332	Tropical Forest Soil	MENEKDAFDGAGFFDLLGEVMTYHGTGVVSVRIHVRDGMPWAVSVHFDKEAEKAA*
Ga0070668_1005491433	3300005347	Switchgrass Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAARRAA*
Ga0070694_1002490281	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDA
Ga0070694_1007137332	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MEHEKEGFDARGFLDLLAEVAHHELTGVVNVRIHVRDGMPWALSVQFDNAAERAA*
Ga0070694_1010630501	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VEHKEEAFDAHRFLDLLGEVMDHDVTGVLNVRIHVRDGMAWAVSVQFNDAAERAA*
Ga0070702_1007776992	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MEREQEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDATKRAA*
Ga0066905_1000092814	3300005713	Tropical Forest Soil	MEHEKEGFDARGFLDLLGEVVHHDLTGVVNVRIHVRDGSPWAVSVQFDDERAA*
Ga0066905_1001366041	3300005713	Tropical Forest Soil	MEHEKEFDARAFLDLLDEVVHHDVTGVVNIRIHIRDGMPWAMSVQFDNAAKKAA*
Ga0066905_1002323752	3300005713	Tropical Forest Soil	MELEKEAFDPRAFLDLLGEVVHHDVTGVLNVRIHVRDGMPWAVSVQFDKRAA*
Ga0066905_1003491132	3300005713	Tropical Forest Soil	MEHEKEAFDARAFLDLLGEVAHHEVTGVLNVRIHVRDGMPWAVSVQFDDTAKRAA*
Ga0066905_1003818282	3300005713	Tropical Forest Soil	MEQEKEGFDPRGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAAKRAA*
Ga0066905_1005545243	3300005713	Tropical Forest Soil	MEREKEGFDARGFLDLLAEVVRHDVTGVVNVRIHVRDGMPWAVSVQFDKAA*
Ga0066905_1007757611	3300005713	Tropical Forest Soil	MEHEKEGFDARGFLDLLGEVVHHDLTGVVNVRIHVRDGMPWAVSVQFDNAAERAA*
Ga0066905_1008866521	3300005713	Tropical Forest Soil	MEHDKEAFDAGGFLDLLSEVTDHEVTGVLYVRIHVRDGTAWAVSIQFDDAP
Ga0066905_1011371463	3300005713	Tropical Forest Soil	GFLDLLAEVVHHGATGVMNVRLHVRDGMPWAVSVQFDDAGKRAA*
Ga0066905_1021621472	3300005713	Tropical Forest Soil	MEPEKEGFDARAFLDLLGEVVHHEVTGVLNVRIHVRDGMPWAVSVQFDNTAKRAA*
Ga0066903_1002457693	3300005764	Tropical Forest Soil	MDNEKKGFDGVAFFDLLGEVMTHHGTGVVSVRIHVRDGMPWAVSVHFDKETGKAA*
Ga0066903_1017025633	3300005764	Tropical Forest Soil	MEHEKEEFDARGFLDLLGEVVHHDLTGVVNVRIHVRDGRPWAVSVQFDNAAERAA*
Ga0066903_1023694092	3300005764	Tropical Forest Soil	MERETEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGVPWAVSVQFDDAAKKAA*
Ga0066903_1029102222	3300005764	Tropical Forest Soil	MEPEKEEFDARAFLDLLGEVVHHEVTGVLNVRIHVRDGMPWAVSVQFDNTAKRAA*
Ga0066903_1039217601	3300005764	Tropical Forest Soil	HKAFDAAGFLELLGEVMFEHDTHTGVVSVRIHVRDGVPWAVSVQFDNAAKKTA*
Ga0066903_1048235281	3300005764	Tropical Forest Soil	MEHEKEAFDVSGFLDLMGEVMDREVVPDNVICVVSVRIHVRDGMPWAVSVQFDDAGKRAA
Ga0068860_1002816164	3300005843	Switchgrass Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFD
Ga0075417_100147762	3300006049	Populus Rhizosphere	MEHEKEFDPRAFLDLLDEVVHHDVTGVVNIRIHIRDGMPWAMSVQFDNAAKKAA*
Ga0075417_100713883	3300006049	Populus Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDATKRAA*
Ga0075432_100861351	3300006058	Populus Rhizosphere	MEHEKEFDPRAFLDLLDEVVHHDVTGVVNIRIHIRDGM
Ga0075428_1011335393	3300006844	Populus Rhizosphere	MENEKEGFDARGFLDLLAEVAHHELTGVVNVRIHVRDGMPWALSVQFDNAAERAA*
Ga0075421_1023486893	3300006845	Populus Rhizosphere	FDAHGFLDLLAEVVHHDATGVVNVRIHVRDGMPWAVSVQFDDAGKRAA*
Ga0075420_1003710703	3300006853	Populus Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSV
Ga0075418_108124791	3300009100	Populus Rhizosphere	MEHEKGALDAPGLLDLLGEVMDHEVTGVLNVRIHVRHGMAWAVSVQFNDAATRAA*
Ga0075418_118718581	3300009100	Populus Rhizosphere	HGFLDLLGEVMTHDVTGVLNVRIHVRDGMAWAVSVQFNDAAKRAA*
Ga0105249_105315991	3300009553	Switchgrass Rhizosphere	GFLDLLAEVAHHELTGVVNVRIHVRDGMPWALSVQFDNAAERAA*
Ga0126374_100271472	3300009792	Tropical Forest Soil	MDNEKRAFDSAGFFDLLGQVMTRHNTGVVSLRIHIRDGLPWAVSVDFDDTKEKAA*
Ga0126380_101028082	3300010043	Tropical Forest Soil	MDNEKKAFDGSGFFDLLGEVMTRHDTGVVSVRIHVRDGTPWAVSVQFDSAKEKAA*
Ga0126380_105948781	3300010043	Tropical Forest Soil	MDNEKRAFDSAGFFDLLGQVMTRHNTGVVSLRIHIRDGLPWAVSVDFDGTKEKAA*
Ga0126380_114268681	3300010043	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTHHATGVVSVRIHVRDGLPWAVSVHFDKEAEKAA*
Ga0126384_103210061	3300010046	Tropical Forest Soil	QKGSAMENEKKAFDSAGFFDLLGQVMTRHNTGVVSLRIHVRDGLPWAVSVDFERETGKAA
Ga0126384_106366042	3300010046	Tropical Forest Soil	MDHENEAFNAHGFLDLLAEVVHHGATGVMNVRLHVRDGMPWAVSVQFDDAGKRAA*
Ga0126384_107054073	3300010046	Tropical Forest Soil	MENEKKGFDGVAFFDLLGEVMTHHGTGVVSVRIHVRDGMPWAVSVHFDKETGKAA*
Ga0126382_113028171	3300010047	Tropical Forest Soil	MEKEKEAFDGAGFFDLLGEVMTHHATGVVSVRIRVRDGTPWAVSVQFDSAKEKAA*
Ga0126382_113221512	3300010047	Tropical Forest Soil	MENEKKAFDSAGFFDLLGQVMTRHNTGVVSLRIHVRDGLPWAVSVHFERETGKAA*
Ga0126382_119651741	3300010047	Tropical Forest Soil	MDDKKEAFDVRGFLNLLAEVAHHDVTGVVNVRIHVRGGMPWAVSFQFDDEARAA*
Ga0126382_119793332	3300010047	Tropical Forest Soil	MEPEKEAFDARAFLDLLGEVVHHEVTGVLNVRIHVRDGMPWAVSVQFDDTAKRAA*
Ga0126373_128082471	3300010048	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTYHATGVVSVRIHVRDGMPWAVSVHFDREAEKAA*
Ga0126378_109772472	3300010361	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTHHGTGVVSVRIHVRDGLPWAVSVHFDKEAEKAA*
Ga0126377_108201332	3300010362	Tropical Forest Soil	MDNEKKAFDGSGFFDLLGEVMTRHDTGVVSVRIRIRDGTPWAVSVQFDSAKEKAA*
Ga0126377_109637222	3300010362	Tropical Forest Soil	MEHEKEAFEARGFLDLLAEVAHHDVTGVLNVRIHVRDGMAWAVSVQFDNTTKRAA*
Ga0126379_100068171	3300010366	Tropical Forest Soil	NEKKAFDSAGFFDLLGQVMTRHNTGVVSLRIHIRDGLPWAVSVDFDDTKEKAA*
Ga0126379_100856304	3300010366	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTDHATGVVSVRIHVRDGMPWAVSVHFDKEAEKAA*
Ga0126379_101650152	3300010366	Tropical Forest Soil	MEHEKEGFDARGFLDLLGEVVHHDLTGVVNVRIHVRDGRPWAVSVQFDNAAERAA*
Ga0126379_108532611	3300010366	Tropical Forest Soil	NEKKGFDGVAFFDLLGEVMTHHGTGVVSVRIHVRDGMPWAVSVHFDKETGKAA*
Ga0126379_127113861	3300010366	Tropical Forest Soil	MDHEKEAFDPRGFLDLLAEVVHHDATGVLNVRIHVRDGRAWAVSVQFDNAAKRAAA*
Ga0126379_134867783	3300010366	Tropical Forest Soil	MEHEKVAFDARGFLDLLTDVVHHEDTGVLNVRIHVRDGMPWAVSVQFDNAGKRAA*
Ga0126379_135641851	3300010366	Tropical Forest Soil	MEHEKEAFDAHAFLDLLDEVVHHDVTGVVNIRIHIRDGMPWAMSVQFDHAAKKAA*
Ga0126383_101578501	3300010398	Tropical Forest Soil	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDEAA*
Ga0126383_102506713	3300010398	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTYHATGVVSVRIHVRDGMPWAVSV
Ga0126383_108598651	3300010398	Tropical Forest Soil	MDNENEAFDGAGFFDLLGEVMTHHGTGVVSVRIHVRDGLPWAVSVHFDKEAEKAA*
Ga0134127_128485841	3300010399	Terrestrial Soil	LALLEVSVEHKEEAFDAHGFLDLLGEVMDHDVTGVLNVRIHVRDGMAWAVSVQFNDAAERAA
Ga0134123_104610201	3300010403	Terrestrial Soil	KEGFDARGFLDLLAEVAHHELTGVVNVRIHVRDGMPWALSVQFDNAAERAA*
Ga0126375_100975082	3300012948	Tropical Forest Soil	MDHENEAFNAHGFLDLLAEVVHHGATGVMNVRIHVRDGIPWAVSVQFDDAGKRAA*
Ga0126375_104677613	3300012948	Tropical Forest Soil	MEREKEGFDARGFLDLLAEVVRHDVTGVVNVRIHVRDGMPWAVSVQFDEAA*
Ga0126375_110043322	3300012948	Tropical Forest Soil	MENEKKTFDSGGFFDLLGEVMTRHNTGVVSLRIHVRDGLPW
Ga0126375_111706561	3300012948	Tropical Forest Soil	MEHEKEAFDARAFLDLLGEVAHHEVTGVLNVRIHVRDGMPWAVSVQFDDTAKR
Ga0126369_104909672	3300012971	Tropical Forest Soil	MEHEKEVFDARGFLDLLGEVVHHDLTGVVNVRIHVRDGRPWAVSVQFDNAAERAA*
Ga0126369_123903392	3300012971	Tropical Forest Soil	MDHEKEAFDPHGFLHLLAEVVHHDATGVLNVRIHVRDGRAWAVSVQFDNAAKRAAA*
Ga0132258_101389696	3300015371	Arabidopsis Rhizosphere	MEREKEEFDARGFLDLLAEVAHHDVTGVLNVRIHVRDGMPWAVSVQFDDAAKKAA*
Ga0132258_112354201	3300015371	Arabidopsis Rhizosphere	KEAFDAHGFFDLLAEVVHHEATGVLSLRIHVRDGLPWAMSVQFDNAEESAA*
Ga0132256_1004581442	3300015372	Arabidopsis Rhizosphere	MEREKEEFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAAKKAA*
Ga0132255_1062814171	3300015374	Arabidopsis Rhizosphere	MEHEKEAFDAHGFLDLLGEVMDHDVTGVLNVRIHVRDGMAWAVSVEFDDAAKRAA*
Ga0163161_116295492	3300017792	Switchgrass Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAAKRAA
Ga0207662_101760263	3300025918	Switchgrass Rhizosphere	AFDAHGFLDLLGEVMDHDVTGVLNVRIHVRDGIAWAVSVEFDDAAKRAA
Ga0209466_10336672	3300027646	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTHHATGVVSVRIHVRDGLPWAVSVDFERETGKAA
Ga0209799_10492332	3300027654	Tropical Forest Soil	MENEKEAFDGAGFFDLLGEVMTHHGTGVVSVRIHVRDGMPWAVSVHFDRETGKAA
Ga0209814_100500622	3300027873	Populus Rhizosphere	MEHEKEFDPRAFLDLLDEVVHHDVTGVVNIRIHIRDGMPWAMSVQFDNAAKKAA
Ga0209465_105902182	3300027874	Tropical Forest Soil	MERETEGFDASGFLDLLAEVVHHDGTGVVNVRIHVRDGMPWAVSVQFDEAA
Ga0207428_112909722	3300027907	Populus Rhizosphere	MEHEKEGFDARGFLDLLAEVAHHELTGVVNVRIHVRDGMPWALSVQFDNAAERAA
Ga0268264_102340181	3300028381	Switchgrass Rhizosphere	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDD
Ga0247828_103375322	3300028587	Soil	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAAKKAA
Ga0318516_100056647	3300031543	Soil	MENEKEAFDGAGFFDLLGEVMTYHATGVVSVRIHVRDGMPWAVSVHFDKEAEKAA
Ga0307469_102242513	3300031720	Hardwood Forest Soil	MDHEKEASFDARAFLDLLAEVVHHEVTGVVNVRIHVRDGMPWAVSVQFDDAAKRAA
Ga0307468_1000296334	3300031740	Hardwood Forest Soil	MEREKEGFDARGFLDLLAEVVHHDVTGVVNVRIHVRDGMPWAVSVQFDDAARRAA
Ga0307468_1000679874	3300031740	Hardwood Forest Soil	MDHEKEASFDARAFLDLLAEVVHHEVTGVVNVRIHVRDGMPWAVSVQFDDAAK
Ga0318502_100210181	3300031747	Soil	MENEKEAFDGAGFFDLLGEVMTYHATGVVSVRIHVRDGMPWAVSVHF
Ga0306922_100359927	3300032001	Soil	MENEKEAFDGAGFFDLLGEVMTYHATGVVSVRIHVRDGMPWAVSVHFDKEAEKA
Ga0318504_105339912	3300032063	Soil	MENEKEAFDGAGFFDLLGEVMTYHATGVVSVRIHVRDGMPWAVSVHFDKEAEK
Ga0307470_103252372	3300032174	Hardwood Forest Soil	HEKEFDPRAFLDLLDEVVHHDVTGVVNIRIHIRDGMPWAMSVQFDNAAKKAA