Metagenome / Metatranscriptome Family F096826

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096826
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	65 residues
Representative Sequence	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAEPSSDGGQYAGKIVCRLP
Number of Associated Samples	79
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.16 %
% of genes near scaffold ends (potentially truncated)	25.96 %
% of genes from short scaffolds (< 2000 bps)	78.85 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.885 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.077 % of family members)
Environment Ontology (ENVO)	Unclassified (34.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 39.13% Coil/Unstructured: 60.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.53.1.1: Ribosomal protein L25-like	d1feua_	1feu	0.62669
d.113.1.1: MutT-like	d1jkna1	1jkn	0.61711
d.113.1.2: IPP isomerase-like	d1hzta1	1hzt	0.61517
d.113.1.1: MutT-like	d1vhza1	1vhz	0.61514
b.53.1.1: Ribosomal protein L25-like	d1dfup_	1dfu	0.61508

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00582	Usp	5.77
PF04087	DUF389	3.85
PF01243	Putative_PNPOx	2.88
PF05974	DUF892	2.88
PF02322	Cyt_bd_oxida_II	0.96
PF04760	IF2_N	0.96
PF07366	SnoaL	0.96
PF02021	UPF0102	0.96
PF02894	GFO_IDH_MocA_C	0.96
PF10938	YfdX	0.96
PF00483	NTP_transferase	0.96
PF07690	MFS_1	0.96
PF07883	Cupin_2	0.96
PF09939	DUF2171	0.96
PF01872	RibD_C	0.96
PF01245	Ribosomal_L19	0.96
PF13520	AA_permease_2	0.96
PF00005	ABC_tran	0.96
PF00211	Guanylate_cyc	0.96
PF00486	Trans_reg_C	0.96
PF01966	HD	0.96
PF00174	Oxidored_molyb	0.96
PF04542	Sigma70_r2	0.96
PF01546	Peptidase_M20	0.96
PF01019	G_glu_transpept	0.96
PF02679	ComA	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1808	Uncharacterized membrane protein AF0785, contains DUF389 domain	Function unknown [S]	3.85
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	2.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.96
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.96
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.96
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.96
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.96
COG1809	Phosphosulfolactate synthase, CoM biosynthesis protein A	Coenzyme transport and metabolism [H]	0.96
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.96
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.96
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.96
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	0.96
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.96
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.96
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.96
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.85 %
Unclassified	root	N/A	21.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.88 %
Unclassified	root	N/A	21.15 %
Viruses	superkingdom	All Organisms → Viruses	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.88 %
Unclassified	root	N/A	21.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.35 %
Unclassified	root	N/A	21.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	61.54 %
Unclassified	root	N/A	21.15 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.04 %
Unclassified	root	N/A	21.15 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.88 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.92 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	23.08 %
Unclassified	root	N/A	21.15 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.92 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.96 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.08 %
Unclassified	root	N/A	21.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.92 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.96 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.96 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.08 %
Unclassified	root	N/A	21.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.92 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.96 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.08 %
Unclassified	root	N/A	21.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.92 %
unclassified Ktedonobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter	0.96 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.96 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.08 %
Unclassified	root	N/A	21.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.92 %
Ktedonobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp.	0.96 %
Streptomyces sp. WAC05292	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WAC05292	0.96 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c1820498	Not Available	501	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13502185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300000443\|F12B_11337822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	756	Open in IMG/M
3300000858\|JGI10213J12805_10524115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WAC05292	1686	Open in IMG/M
3300000956\|JGI10216J12902_100955028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1715	Open in IMG/M
3300000956\|JGI10216J12902_104007369	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300000956\|JGI10216J12902_110548301	All Organisms → Viruses → Predicted Viral	1040	Open in IMG/M
3300000956\|JGI10216J12902_115102612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300000956\|JGI10216J12902_118353789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300002899\|JGIcombinedJ43975_10057832	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300003999\|Ga0055469_10148421	Not Available	709	Open in IMG/M
3300004114\|Ga0062593_101153555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	809	Open in IMG/M
3300005294\|Ga0065705_10215293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1346	Open in IMG/M
3300005294\|Ga0065705_11121796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	518	Open in IMG/M
3300005558\|Ga0066698_10526183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	803	Open in IMG/M
3300005937\|Ga0081455_10043391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	3934	Open in IMG/M
3300006844\|Ga0075428_101231602	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300006876\|Ga0079217_11476482	Not Available	536	Open in IMG/M
3300007004\|Ga0079218_10230615	Not Available	1442	Open in IMG/M
3300009012\|Ga0066710_100216303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2743	Open in IMG/M
3300009137\|Ga0066709_100100110	All Organisms → cellular organisms → Bacteria	3547	Open in IMG/M
3300009137\|Ga0066709_102220417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	756	Open in IMG/M
3300009789\|Ga0126307_10758740	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300009789\|Ga0126307_10914951	Not Available	709	Open in IMG/M
3300009801\|Ga0105056_1007443	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1168	Open in IMG/M
3300009811\|Ga0105084_1000327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4035	Open in IMG/M
3300009812\|Ga0105067_1076413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	574	Open in IMG/M
3300009820\|Ga0105085_1000521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4926	Open in IMG/M
3300009837\|Ga0105058_1043045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300009837\|Ga0105058_1059496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	863	Open in IMG/M
3300009840\|Ga0126313_10021943	All Organisms → cellular organisms → Bacteria	4260	Open in IMG/M
3300009840\|Ga0126313_11155938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300010036\|Ga0126305_10041583	Not Available	2565	Open in IMG/M
3300010036\|Ga0126305_10155551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1425	Open in IMG/M
3300010038\|Ga0126315_10046048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2348	Open in IMG/M
3300010041\|Ga0126312_10091689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2069	Open in IMG/M
3300010041\|Ga0126312_10687295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300010045\|Ga0126311_10368268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1099	Open in IMG/M
3300010999\|Ga0138505_100007067	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300011003\|Ga0138514_100051577	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300012022\|Ga0120191_10011638	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300012204\|Ga0137374_10352173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1187	Open in IMG/M
3300012204\|Ga0137374_10440253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300012353\|Ga0137367_10000083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55782	Open in IMG/M
3300012938\|Ga0162651_100054872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	634	Open in IMG/M
3300014263\|Ga0075324_1048867	Not Available	821	Open in IMG/M
3300017997\|Ga0184610_1071274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1062	Open in IMG/M
3300018027\|Ga0184605_10002574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6137	Open in IMG/M
3300018027\|Ga0184605_10071544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1503	Open in IMG/M
3300018028\|Ga0184608_10131530	Not Available	1068	Open in IMG/M
3300018031\|Ga0184634_10469479	Not Available	565	Open in IMG/M
3300018053\|Ga0184626_10253787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	737	Open in IMG/M
3300018054\|Ga0184621_10122931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	928	Open in IMG/M
3300018056\|Ga0184623_10064542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1681	Open in IMG/M
3300018056\|Ga0184623_10220537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
3300018061\|Ga0184619_10038032	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300018061\|Ga0184619_10067169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1580	Open in IMG/M
3300018067\|Ga0184611_1144752	Not Available	840	Open in IMG/M
3300018071\|Ga0184618_10345006	Not Available	635	Open in IMG/M
3300018072\|Ga0184635_10102710	Not Available	1131	Open in IMG/M
3300018073\|Ga0184624_10068485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1474	Open in IMG/M
3300018073\|Ga0184624_10176065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	949	Open in IMG/M
3300018074\|Ga0184640_10535471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300018075\|Ga0184632_10388696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300018078\|Ga0184612_10557728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300018081\|Ga0184625_10019585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3218	Open in IMG/M
3300018433\|Ga0066667_10722417	All Organisms → cellular organisms → Bacteria → Terrabacteria group	838	Open in IMG/M
3300018466\|Ga0190268_11414665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300019255\|Ga0184643_1053272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300019269\|Ga0184644_1730787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300019885\|Ga0193747_1011040	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300021080\|Ga0210382_10455924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300022534\|Ga0224452_1123339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	796	Open in IMG/M
3300022534\|Ga0224452_1233988	Not Available	563	Open in IMG/M
3300022756\|Ga0222622_10068471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2079	Open in IMG/M
3300027006\|Ga0209896_1009353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1048	Open in IMG/M
3300027332\|Ga0209861_1070493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M
3300028711\|Ga0307293_10070297	Not Available	1100	Open in IMG/M
3300028716\|Ga0307311_10151930	Not Available	666	Open in IMG/M
3300028722\|Ga0307319_10020243	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300028744\|Ga0307318_10150477	Not Available	798	Open in IMG/M
3300028744\|Ga0307318_10193838	Not Available	702	Open in IMG/M
3300028771\|Ga0307320_10005323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4579	Open in IMG/M
3300028796\|Ga0307287_10080946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1217	Open in IMG/M
3300028796\|Ga0307287_10191434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777	Open in IMG/M
3300028811\|Ga0307292_10453160	Not Available	548	Open in IMG/M
3300028814\|Ga0307302_10011001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4055	Open in IMG/M
3300028814\|Ga0307302_10363381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	714	Open in IMG/M
3300028828\|Ga0307312_10982573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	559	Open in IMG/M
3300028878\|Ga0307278_10008557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4831	Open in IMG/M
3300028878\|Ga0307278_10055328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1794	Open in IMG/M
3300028878\|Ga0307278_10152906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1033	Open in IMG/M
3300028878\|Ga0307278_10238950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp.	807	Open in IMG/M
3300028880\|Ga0307300_10268694	Not Available	570	Open in IMG/M
3300028881\|Ga0307277_10009552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3733	Open in IMG/M
3300028881\|Ga0307277_10069535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1459	Open in IMG/M
3300028881\|Ga0307277_10302527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	709	Open in IMG/M
3300031114\|Ga0308187_10312374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	593	Open in IMG/M
3300031548\|Ga0307408_100185297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1673	Open in IMG/M
3300031753\|Ga0307477_10465260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	862	Open in IMG/M
3300031995\|Ga0307409_100770804	Not Available	967	Open in IMG/M
3300034680\|Ga0370541_045359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.15%
Host-Associated	Host-Associated	3.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.19%
Aquatic	Environmental → Aquatic	25.96%
Plants	Host-Associated → Plants	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.31%
Sediment	Environmental → Aquatic → Sediment	22.12%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Marine	Environmental → Aquatic → Marine	0.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	22.12%
Sand	Environmental → Terrestrial → Soil → Sand	9.62%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Loam	Environmental → Terrestrial → Soil → Loam	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	22.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.50%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	9.62%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.08%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	19.23%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	9.62%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.88%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009793	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300014263	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027332	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_18204981	3300000033	Soil	MGXVQRFTXTIEAPNWXXXQXVELPQLPGKGDAIETRYGTCIVTEAEPSPGGGQYGGKIICRLP*
ICChiseqgaiiFebDRAFT_135021852	3300000363	Soil	TVQRFTITIEAPNWTDIQVVELPQLPGKGDAIETRYGTCIVTEAEPSPGGGQYGGKIICRLP*
F12B_113378222	3300000443	Soil	VQRFTVTIEGATWEDVDEVELPRLPGKGDLIETKYGTCLVTRAELFPDPGQYAGKIVCRIPE*
JGI10213J12805_105241152	3300000858	Soil	MQRFTVIIEGLNWEDVEDVELPRIPGEGETIETKYGTCIVTSAEAQPDSSGHAGKIVCRLP*
JGI10216J12902_1009550283	3300000956	Soil	MGAVRRFTVTIEGSNWEDVQEVELPELPREGDVIETRYGTCIVTRTESSQPDEPYTGKIVCRLP*
JGI10216J12902_1040073693	3300000956	Soil	VQRFTVTIEGGTWEDVDEVELPRLPSKGDLIETKYGTCLVTSADPSPNPGPYAGKIVCRFPSS*
JGI10216J12902_1105483011	3300000956	Soil	VRRFTVKIEGSNWEDVQELELPESPRVGDAIETRYGTCLVTQADPSPDSDQYAGQIV
JGI10216J12902_1151026121	3300000956	Soil	VQRFTVTIEGATWEDVDEVELPRLPGKGDLIETKYGTCLVTQADPSPNPGPYAGKIVC
JGI10216J12902_1183537891	3300000956	Soil	TIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP*
JGIcombinedJ43975_100578322	3300002899	Soil	VQRFTVTIEGATWEDVDEVELPRLPGKGDLIETKYGTCLVTQADPSPNPDPYAGKIVCRFPGGS*
Ga0055469_101484211	3300003999	Natural And Restored Wetlands	PVLRFSVVIEAPNWKDVQDLELGRAPQEGDTIETRYGTCIVTQVELTSEGGSRAGKIVCRLP*
Ga0062593_1011535552	3300004114	Soil	VVVTASPGDAIMDAVRRFMVTIKESNWEDVDDVELPGLPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP*
Ga0065705_102152933	3300005294	Switchgrass Rhizosphere	VQRFTITIEAPNWTDVQGVELPQLPGEGDAIETRYGTCIVTQAEPSSGGGQYAGKIVCRLP*
Ga0065705_111217962	3300005294	Switchgrass Rhizosphere	MQRFTVTIEGLNWEDVDEVELPGLPAEGEPIETKYGTCLVTRAELFPDPGQYAGKIVCRTP*
Ga0066698_105261832	3300005558	Soil	VKRFTVTIEAPNWKDLQEIELPELPGEGDAIETRYGTCIVTRAEPVPDGGQYAGKIVCRLP*
Ga0081455_100433913	3300005937	Tabebuia Heterophylla Rhizosphere	VQRFTVTIEGGTWEDVDELELPRLPSEGDLIETKYGTCLVTSAEPAPNPGPYAGKIVCRFPSGS*
Ga0075428_1012316022	3300006844	Populus Rhizosphere	MQRFTVTIEGLNWEDVDEVELPGLPAEGEPIETKYGTCLVTSAELFPDPGQYAGKIVCRTP*
Ga0079217_114764822	3300006876	Agricultural Soil	MGTMKRFAVTIEFPNWRDVQEVELLQLPREGDAIETRYGTCIVTQSEPSPDGGQYA
Ga0079218_102306152	3300007004	Agricultural Soil	MGTMKRFAVTIEFPNWRDVQEVELLQLPREGDAIETRYGTCIVTQSEPSPDGGQYAGKIVCRLP*
Ga0066710_1002163034	3300009012	Grasslands Soil	VKRFTVTIEAPNWKDLQEIELPELPGEGDAIETRYGTCIVTRAEPVPDGGQYAGKIVCRL
Ga0066709_1001001106	3300009137	Grasslands Soil	MGAVQRFTVTIQGSNWEDVQEMELQQLPAEGAAIETRYGTCVVTRAELLSDGKTYAGKIVCRLPK*
Ga0066709_1022204172	3300009137	Grasslands Soil	HGGVKRFTVTIEAPNWKDLQEIELPELPGEGDAIETRYGTCIVTRAEPVPDGGQYAGKIVCRLP*
Ga0126307_107587401	3300009789	Serpentine Soil	MGAVKRFNITIEGPNWKDVEDLELPQLPAEGDAVETKYGTCIVTQAESSPDSEQYAGKIVCRLP*
Ga0126307_109149512	3300009789	Serpentine Soil	MGAVQSFTVTIEAPNWKDVQEVELPQIPGEGDAIEIKYGTCIVTQAEPLSDGGQYAGKIVCRLP*
Ga0105077_1233181	3300009793	Groundwater Sand	MRAVQRFTVTIEGPSWEDVDEVELLRLPSEGEPIQTKYGLCLVTSAEPLSDTGQYAGKIVCRIPG*
Ga0105056_10074433	3300009801	Groundwater Sand	MKRFTITIEAPNWKDVQEVELPELPGEGDAIETRYGTCIVTQAELSPDSGPYAGKIVCRLP*
Ga0105084_10003272	3300009811	Groundwater Sand	MGTMKRFTITIEAPNWKDVQEVELPELPGEGDAIETRYGTCIVTQAELSPDSGPYAGKIVCRLP*
Ga0105067_10764132	3300009812	Groundwater Sand	MGAVDRFTITIQGRNWEDVQEVELAQLPGEGDAIETRYGTCIVTRAEPLPDRKPYAGKIVCRLPSSHTG*
Ga0105085_10005214	3300009820	Groundwater Sand	LASVRLAAIMRAVQRFTVTIEGPSWEDVDEVELLRLPSEGEPIQTKYGLCLVTSAEPLSDTGQYAGKIVCRIPG*
Ga0105058_10430451	3300009837	Groundwater Sand	PRWEDLQEIELPELPGEGDAIETRYGTCIVTGAEPLPDRKPYAGKIVCRLPSSYSG*
Ga0105058_10594962	3300009837	Groundwater Sand	LRSTVGLGDETLQRFIVTIEGANWEDVDDIELPQLPGEGETIETKYGTCLVIRSEALPDSGQHAGKIVCRTP*
Ga0126313_100219436	3300009840	Serpentine Soil	MGAVQSFTVTIEAPNWKDVQEVELPQIPGEGDAIETKYGTCIVTQAEPSSDGGQYAGKIVCRLP*
Ga0126313_111559382	3300009840	Serpentine Soil	VQRFTITIEARGWEDVQEIELPELPGEGDAIETRYGTCIVTRAESLPDSTNYAGRIVCRFP*
Ga0126305_100415832	3300010036	Serpentine Soil	VDGPVKGVYAVVVTASPGDAIMSAVRRFMVTIEESNWEDVDDVELPELPREGDTIETKYGTCIVTHTELLSEGGHYAGKIVCRLP*
Ga0126305_101555511	3300010036	Serpentine Soil	MGAVQSFTVTIEAPNWKDVQEVELPQLPGEGDAIEIKYGTCIVTQAEPLSDGGQYAGKIVCRLP*
Ga0126315_100460483	3300010038	Serpentine Soil	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIEIKYGTCIVTQAEPSSDGGQYAGKIVCRLP*
Ga0126312_100916893	3300010041	Serpentine Soil	VPDGRPAVNEVDGPVKGVYAVVVTASPGDAIMSAVRRFMVTIEESNWEDVDDVELPELPREGDTIETKYGTCIVTHTELLSEGGHYAGKIVCRLP*
Ga0126312_106872952	3300010041	Serpentine Soil	VVLAVVVTASPGGAIMRAVRRFTVTIDGPNWEDAEDVELPELPREGDTIETRYGTCIVTRAEPLPDGEHYSGKIVCRLP*
Ga0126311_103682681	3300010045	Serpentine Soil	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIEIKYGTCIVTQAEPLSDGGQYAGKIVCRLP*
Ga0138505_1000070671	3300010999	Soil	VQRFIVTIEGPNWKDVDELELPQLPAEGDAVETKYGTCIVTQAEPSPGSGKYADKIVCRLP*
Ga0138514_1000515771	3300011003	Soil	MGAVQRFTVTIEAPNWTDVQEVELPQLPGEGDAIETRYGTCIVTQAEPSSGGGQYAGKIVCRPP*
Ga0120191_100116382	3300012022	Terrestrial	MRRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP*
Ga0137374_103521731	3300012204	Vadose Zone Soil	MGAVQRFTITIEAPNWTDVQEVELPQLPGEGDAIETRYGTCIVTQAEPSSDGGQYAGKIVCRLP*
Ga0137374_104402532	3300012204	Vadose Zone Soil	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAEPSSDGGQYAGKIVCRFP*
Ga0137367_1000008327	3300012353	Vadose Zone Soil	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAEPSSDGGQYAGKIVCHFP*
Ga0162651_1000548722	3300012938	Soil	MGAVQSFTVTIEAPNWKDVQEVELPQLPGEGDAIETKYGTCIVTQAEPSSDGGQYAGKIVCRLP*
Ga0075324_10488672	3300014263	Natural And Restored Wetlands	VLRFSVVIEAPNWKDVQDLELGRAPQEGDTIETRYGTCIVTQVELTSEGGSRAGKIVCRLP*
Ga0184610_10712742	3300017997	Groundwater Sediment	MGTVKRFTITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPDSGPYAGKIVCRLP
Ga0184605_100025745	3300018027	Groundwater Sediment	MCAVQRFIITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQVESSPDSSPYAGKIVCRLP
Ga0184605_100715443	3300018027	Groundwater Sediment	MGAVQRFTITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPESGPYAGRIVCRLP
Ga0184608_101315301	3300018028	Groundwater Sediment	MPWWVTASPGDAIMSAMHRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0184634_104694791	3300018031	Groundwater Sediment	VLVTASPGDAIMSAMRRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGK
Ga0184626_102537872	3300018053	Groundwater Sediment	MGTVKRFTITIEAPNWKDVQEVELPQLPSEGDAIETRYGTCIVTQAELSPDSAPYAGKIVCRLP
Ga0184621_101229312	3300018054	Groundwater Sediment	QRFTITIEAPNWTDVQGVELPQLPGEGDAIETRYGTCIVTQAEPSSGGGQYAGKIVCRLP
Ga0184623_100645422	3300018056	Groundwater Sediment	MGTVKRFTITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPGSGPYAGKIVCRLP
Ga0184623_102205371	3300018056	Groundwater Sediment	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAEPSSDGGQYAGKIVCRLP
Ga0184619_100380322	3300018061	Groundwater Sediment	MDAVQRFTITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPESGPYAGRIVCRLP
Ga0184619_100671692	3300018061	Groundwater Sediment	MQAAIMGVVRRFTVTIKAPNWEDVQEVELPQLPREGDAIETRYGTCTVTHAESSADSSQYAGKIICRFP
Ga0184611_11447523	3300018067	Groundwater Sediment	MPWWVTASPGDAIMSAMHRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCR
Ga0184618_103450061	3300018071	Groundwater Sediment	IKAPNWEDVQEVELPQLPREGDAIETRYGTCTVTHAESSADNSPYAGKIICRFP
Ga0184635_101027101	3300018072	Groundwater Sediment	MSRTDVPTSVKGVYAVLVTASPGDAIMSAMRRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0184624_100684851	3300018073	Groundwater Sediment	MRRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRL
Ga0184624_101760652	3300018073	Groundwater Sediment	VKRFTVTIEGQNWEDVAEIELPQLPREGETIETKYGTCLVTSAEPLEDAGPYAGKIVCRS
Ga0184640_105354711	3300018074	Groundwater Sediment	MGAVQRFTITIEAPNWTDVQGVELPQLPGEGDAIETRYGTCIVTQAEPSSGGGQYAGKIVCRLP
Ga0184632_103886962	3300018075	Groundwater Sediment	MGTVKRFTITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPDSAPYAGKIVCRLP
Ga0184612_105577282	3300018078	Groundwater Sediment	MGTVKRFTITIEAPNWKDVQEVELPQLPSEGDAIETRYGTCIVTQAELSPDSGPYAGKIVCRLP
Ga0184625_100195852	3300018081	Groundwater Sediment	VKRFTVTIEGQNWEDVAEIELPQLPREGETIETKYGTCLVTSAEPLQDAGPYAGKIVCRS
Ga0066667_107224172	3300018433	Grasslands Soil	MGAVQRFTVTIQGSNWEDVQEMELQQLPAEGAAIETRYGTCVVTRAELLSDGKTYAGKIVCRLPK
Ga0190268_114146651	3300018466	Soil	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAEPSPGGGQYAGKIVCRLP
Ga0184643_10532722	3300019255	Groundwater Sediment	VKRFTVTIEASNWKDLQEIELPQLPREGDAIETRYGTCIVTQAEPSSDGGQYAGKIVCRL
Ga0184644_17307872	3300019269	Groundwater Sediment	MGAVQSFTVTIEAPNWKDVQEVELPQLPGEGDAIETKYGTCIVTQAEPSSDGGQYAGKIVCRLP
Ga0193747_10110405	3300019885	Soil	VQAAIIGSVRRFTVTIKAPNWEDVQEVELPQLPREGDAIETRYGTCTVTHAESSADNSQYAGKIICRFP
Ga0210382_104559243	3300021080	Groundwater Sediment	VKRFTVTIEASNWKDLQEIELPQLPREGDAIETRYGTCIVTQAEPVPDGGQYAGKIVCRL
Ga0224452_11233392	3300022534	Groundwater Sediment	MGTVQRFTITIEAPNWKDVQEVELPQIPGEGDAIETRYGTCIVTQAELSPGSGPYAGKIVCRLP
Ga0224452_12339882	3300022534	Groundwater Sediment	RGFMPWWVTASPGDAIMSAMHRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0222622_100684713	3300022756	Groundwater Sediment	RFTITIEAPNWTDVQGVELPQLPGEGDAIETRYGTCIVTQAEPSSGGGQYAGKIVCRLP
Ga0209896_10093533	3300027006	Groundwater Sand	MGTMKRFTITIEAPNWKDVQEVELPELPGEGDAIETRYGTCIVTQAELSPDSGPYAGKIVCRLP
Ga0209861_10704931	3300027332	Groundwater Sand	VRLAAIMRAVQRFTVTIEGPSWEDVDEVELLRLPSEGEPIQTKYGLCLVTSAEPLSDTGQYAGKIVCRIPG
Ga0209854_10975461	3300027384	Groundwater Sand	LGRSLASVRLAAIMRAVQRFTVTIEGPSWEDVDEVELLRLPSEGEPIQTKYGLCLVTSAEPLSDTGQYAGKIVCRIPG
Ga0307293_100702972	3300028711	Soil	VQAAIIGAVRRFTVTIKAPNWEDVQEVELPQLPREGDAIETRYGTCTVTHAESSADNSQYAGKIICRFP
Ga0307311_101519302	3300028716	Soil	AAIIGAVRRFTVTIKAPNWEDVQEVELPQLPREGDAIETRYGTCTVTHAESSADNSQYAGKIICRFP
Ga0307319_100202433	3300028722	Soil	GVYAVLVTASPGDAIMSAMRRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0307318_101504772	3300028744	Soil	MSAMRRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0307318_101938382	3300028744	Soil	RAPCPSVGGRVTASPGDAIMSAMRRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0307320_100053237	3300028771	Soil	VSSVVGTSGPSSNRAIMGAVQRFTITIETPDWKDVQEVELPQLPREGDAIETKYGTCIVTQAEPSPDVGPYAGKIVCRLP
Ga0307287_100809461	3300028796	Soil	GDAIMSAMHRFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0307287_101914341	3300028796	Soil	MGTVQRFTITIEAPNWKDVQEVELPQIPGEGDAIETRYGTCIVTQAELSPDSAPYAGKIVCRLP
Ga0307292_104531601	3300028811	Soil	AARRSGVQAAIIGAVRRFTVTIKAPNWEDVQEVELPQLPREGDAIETRYGTCTVTHAESSADNSQYAGKIICRFP
Ga0307302_100110014	3300028814	Soil	VQSFTVTIEAPNWKDVQEVELPQLPGEGDAIETKYGTCIVTQAEPSSDGGQYAGKIVCRL
Ga0307302_103633812	3300028814	Soil	MGTVKRFTITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPDSAPYAGKI
Ga0307312_109825731	3300028828	Soil	VKRFTVTIEAPNWKDLQEIELPQLPREGDAIETRYGTCIVTQAEPVPDGGQYAGKIVCRL
Ga0307278_100085576	3300028878	Soil	MGAVQRFTITIETPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPESGQYAGKIVCRLP
Ga0307278_100553282	3300028878	Soil	MQRFTVTIEGLNWEDVDEVELPGLPAEGEPIETKYGTCLVTRAELFPDPGQYAGKIVCRA
Ga0307278_101529063	3300028878	Soil	MGAVQRFTITIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQAELSPDSGAYAGKIVCRLP
Ga0307278_102389501	3300028878	Soil	VRRFTVTIKAPNWEDVQEIELPELPREGDAIETRYGTCTVTHAESSVDNPPYAGKIICRF
Ga0307300_102686942	3300028880	Soil	HMFMVTIEESNWEDVDDVELPELPREGDTFETKYGTCIVTHAELLSDGGQYAGKIVCRLP
Ga0307277_100095521	3300028881	Soil	IEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTQVESSPDSSPYAGKIVCRLP
Ga0307277_100695353	3300028881	Soil	LARKADHAIMCAVQRFIITIEAPNWRDVQEVELPQLPGEGDAIETRYGTCIVTQVESSPDSAYAGKIVCRLP
Ga0307277_103025272	3300028881	Soil	MGAVQRFTVTIEAPNWKDFQEVELPQLPGEGDAIETRYGTCIVTQAEPSSDGGQYAGKIVCRLP
Ga0308187_103123741	3300031114	Soil	GRHGRTLGRSCDHGAVQSFTVTIEAPNWKDVQEVELPQLPGEGDAIETKYGTCIVTQAEPSSDGGQYAGKIVCRLP
Ga0307408_1001852972	3300031548	Rhizosphere	MGAVQRFTVTIEAPNWKDVQEVELPQLPGEGDAIEIKYGTCIVTQAEPLSDGGQYAGKIVCRLP
Ga0307477_104652602	3300031753	Hardwood Forest Soil	VVARQAIVPRFMLTIKGPNFEDVGDTELPRLPREGDNIETKYGTCIVTHVEPLAEHEQYRGKITCRLP
Ga0307409_1007708041	3300031995	Rhizosphere	MGAVQSFTVTIEAPNWKDVQEVELPQLPGEGDAIEIKYGTCIVTQAEPLSDGGQYAGKIVCRLP
Ga0370541_045359_3_173	3300034680	Soil	VTIEAPNWKDVQEVELPQLPGEGDAIETRYGTCIVTGAEPSSGSGQYAGKIVCRLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096826

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences