Metagenome Family F096821

Basic Information
Family ID	F096821
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	43 residues
Representative Sequence	SSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Number of Associated Samples	90
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.92 %
% of genes near scaffold ends (potentially truncated)	60.58 %
% of genes from short scaffolds (< 2000 bps)	91.35 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (92.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.154 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.038 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF09317	ACDH_C	56.73
PF00108	Thiolase_N	19.23
PF02803	Thiolase_C	5.77
PF03401	TctC	0.96
PF13808	DDE_Tnp_1_assoc	0.96
PF13701	DDE_Tnp_1_4	0.96
PF04480	DUF559	0.96
PF00378	ECH_1	0.96
PF00462	Glutaredoxin	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	25.00
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.31 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.77 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.73 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	3.85 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.92 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	3.85 %
Unclassified	root	N/A	1.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	25.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.31 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3.85 %
Unclassified	root	N/A	1.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.00 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	7.69 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	3.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.85 %
Aurantimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae	1.92 %
Unclassified	root	N/A	1.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.00 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	7.69 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	3.85 %
Jiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Jiella	1.92 %
Unclassified	root	N/A	1.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.00 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	7.69 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	3.85 %
Jiella endophytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Jiella → Jiella endophytica	1.92 %
Unclassified	root	N/A	1.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.00 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	7.69 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	3.85 %
Jiella endophytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Jiella → Jiella endophytica	1.92 %
Unclassified	root	N/A	1.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10714441	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300004480\|Ga0062592_102576728	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005172\|Ga0066683_10231646	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300005332\|Ga0066388_101276318	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300005332\|Ga0066388_101930243	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300005332\|Ga0066388_102478515	All Organisms → cellular organisms → Bacteria → Proteobacteria	942	Open in IMG/M
3300005332\|Ga0066388_105062182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300005444\|Ga0070694_100533307	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300005445\|Ga0070708_101840759	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300005456\|Ga0070678_101125820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	726	Open in IMG/M
3300005471\|Ga0070698_101265554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300005535\|Ga0070684_100382896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1296	Open in IMG/M
3300005554\|Ga0066661_10167982	All Organisms → cellular organisms → Eukaryota	1349	Open in IMG/M
3300005557\|Ga0066704_10134438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1650	Open in IMG/M
3300005559\|Ga0066700_10288966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1153	Open in IMG/M
3300005602\|Ga0070762_10096709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1703	Open in IMG/M
3300005713\|Ga0066905_100429390	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300005713\|Ga0066905_101557083	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005764\|Ga0066903_101065045	All Organisms → cellular organisms → Bacteria → Proteobacteria	1486	Open in IMG/M
3300005764\|Ga0066903_101927384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1133	Open in IMG/M
3300005764\|Ga0066903_102447426	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M
3300005764\|Ga0066903_102503085	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300005764\|Ga0066903_103404333	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300005937\|Ga0081455_10638582	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300006844\|Ga0075428_102162822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300006903\|Ga0075426_11076127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300007255\|Ga0099791_10005249	All Organisms → cellular organisms → Bacteria	5330	Open in IMG/M
3300009523\|Ga0116221_1024842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3062	Open in IMG/M
3300010046\|Ga0126384_10839765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	825	Open in IMG/M
3300010047\|Ga0126382_12513755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300010358\|Ga0126370_11424520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300010360\|Ga0126372_10999758	Not Available	848	Open in IMG/M
3300010361\|Ga0126378_10912941	All Organisms → cellular organisms → Bacteria → Proteobacteria	984	Open in IMG/M
3300010361\|Ga0126378_11824991	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	692	Open in IMG/M
3300010399\|Ga0134127_10328135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1485	Open in IMG/M
3300012204\|Ga0137374_10025941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6526	Open in IMG/M
3300012206\|Ga0137380_11568243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300012356\|Ga0137371_10248895	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1388	Open in IMG/M
3300012582\|Ga0137358_10533152	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300012683\|Ga0137398_10878008	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300012937\|Ga0162653_100018147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	925	Open in IMG/M
3300012960\|Ga0164301_10522185	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300012971\|Ga0126369_10592077	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300012985\|Ga0164308_10625038	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	919	Open in IMG/M
3300014638\|Ga0181536_10507878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300015089\|Ga0167643_1051542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300016319\|Ga0182033_11597569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300016319\|Ga0182033_12153370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300016387\|Ga0182040_10419164	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300016404\|Ga0182037_10236351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1438	Open in IMG/M
3300016422\|Ga0182039_10544208	All Organisms → cellular organisms → Bacteria → Proteobacteria	1008	Open in IMG/M
3300017553\|Ga0182744_1112260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1103	Open in IMG/M
3300017975\|Ga0187782_10526744	All Organisms → cellular organisms → Bacteria → Proteobacteria	905	Open in IMG/M
3300018028\|Ga0184608_10026144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2164	Open in IMG/M
3300018067\|Ga0184611_1243119	All Organisms → cellular organisms → Bacteria → Proteobacteria	638	Open in IMG/M
3300018073\|Ga0184624_10344892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	667	Open in IMG/M
3300018073\|Ga0184624_10406841	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300018085\|Ga0187772_10006106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6264	Open in IMG/M
3300018468\|Ga0066662_12388616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300018481\|Ga0190271_12321857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300018482\|Ga0066669_11232049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	676	Open in IMG/M
3300019356\|Ga0173481_10451340	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300019890\|Ga0193728_1056918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1888	Open in IMG/M
3300020001\|Ga0193731_1027877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1485	Open in IMG/M
3300020002\|Ga0193730_1152532	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300020016\|Ga0193696_1041602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1220	Open in IMG/M
3300020579\|Ga0210407_10763648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	747	Open in IMG/M
3300021086\|Ga0179596_10071044	All Organisms → cellular organisms → Eukaryota	1510	Open in IMG/M
3300021404\|Ga0210389_10423361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1047	Open in IMG/M
3300021510\|Ga0222621_1002461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2921	Open in IMG/M
3300025935\|Ga0207709_10517352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Jiella → Jiella endophytica	934	Open in IMG/M
3300026121\|Ga0207683_10034035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4428	Open in IMG/M
3300026317\|Ga0209154_1126341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1079	Open in IMG/M
3300027748\|Ga0209689_1022340	All Organisms → cellular organisms → Bacteria → Proteobacteria	3892	Open in IMG/M
3300027874\|Ga0209465_10156330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300027875\|Ga0209283_10701407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300027903\|Ga0209488_10284493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1236	Open in IMG/M
3300028708\|Ga0307295_10168521	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300028711\|Ga0307293_10118700	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300028714\|Ga0307309_10095241	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300028782\|Ga0307306_10041087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1128	Open in IMG/M
3300028880\|Ga0307300_10118010	All Organisms → cellular organisms → Bacteria → Proteobacteria	813	Open in IMG/M
3300031170\|Ga0307498_10374556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300031543\|Ga0318516_10393001	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300031545\|Ga0318541_10103142	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1533	Open in IMG/M
3300031573\|Ga0310915_10169150	All Organisms → cellular organisms → Bacteria → Proteobacteria	1518	Open in IMG/M
3300031640\|Ga0318555_10057032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1995	Open in IMG/M
3300031640\|Ga0318555_10120840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1391	Open in IMG/M
3300031723\|Ga0318493_10319149	All Organisms → cellular organisms → Bacteria → Proteobacteria	841	Open in IMG/M
3300031770\|Ga0318521_10109789	All Organisms → cellular organisms → Bacteria → Proteobacteria	1529	Open in IMG/M
3300031770\|Ga0318521_10303678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	940	Open in IMG/M
3300031781\|Ga0318547_10208476	All Organisms → cellular organisms → Bacteria → Proteobacteria	1169	Open in IMG/M
3300031792\|Ga0318529_10415236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300031795\|Ga0318557_10052455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1719	Open in IMG/M
3300031821\|Ga0318567_10408507	All Organisms → cellular organisms → Bacteria → Proteobacteria	769	Open in IMG/M
3300031821\|Ga0318567_10541384	Not Available	661	Open in IMG/M
3300031879\|Ga0306919_11178582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Jiella → Jiella endophytica	582	Open in IMG/M
3300031896\|Ga0318551_10670712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300031942\|Ga0310916_10297421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1366	Open in IMG/M
3300032025\|Ga0318507_10033569	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300032035\|Ga0310911_10718629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300032059\|Ga0318533_10239489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1307	Open in IMG/M
3300032094\|Ga0318540_10087984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1448	Open in IMG/M
3300033289\|Ga0310914_10012459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6367	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.23%
Host-Associated	Host-Associated	5.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.46%
Aquatic	Environmental → Aquatic	5.77%
Plants	Host-Associated → Plants	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.50%
Sediment	Environmental → Aquatic → Sediment	4.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.27%
Loam	Environmental → Terrestrial → Soil → Loam	17.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.96%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017553	Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft MG (version 2)	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096821

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_107144412	3300001593	Forest Soil	MITSSKDSAPKGWRSSSGRPQATARSTGVNGPGRPRALMNGVREPSTI*
Ga0062592_1025767282	3300004480	Soil	MTWSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066683_102316461	3300005172	Soil	MTSSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066388_1012763181	3300005332	Tropical Forest Soil	ASGGNGWRNSSGRPQATARSTGVNGPGRPRARMNGVRLPSVM*
Ga0066388_1019302432	3300005332	Tropical Forest Soil	GNGWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM*
Ga0066388_1024785153	3300005332	Tropical Forest Soil	GNGWRNSSGRPHSTARSTGENGPGRPRARMNGVRLPSTM*
Ga0066388_1050621821	3300005332	Tropical Forest Soil	KASGANGWRSSSGLPQATVRSTGVNGPGRPRARMNGVRLPSTI*
Ga0070694_1005333072	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSKASGANGWRSRSGLPQATVRSTGVNGPGRPRARMNGVRLPSTM*
Ga0070708_1018407592	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSKASGGNGWRKSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0070678_1011258202	3300005456	Miscanthus Rhizosphere	MTWSKASDLNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0070698_1012655541	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSNASGGNGWRKSSGRPHSTARSTGENGPGRPRARMNGVRLPSTM*
Ga0070684_1003828962	3300005535	Corn Rhizosphere	MTWSKASGLNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066661_101679822	3300005554	Soil	MTSSKASGGNDWRKSSGRPHSTARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066704_101344382	3300005557	Soil	MTSSKASGGNGWRKSSGRPHSTARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066700_102889662	3300005559	Soil	MTSSKASGGNGWRKSSGRPHSTARSTGENGPGRPRARMNGVRLPSTM*
Ga0070762_100967091	3300005602	Soil	WRSNSGRPHCTARSTGVNGPGAPRALMKGVRLPSTI*
Ga0066905_1004293901	3300005713	Tropical Forest Soil	GNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066905_1015570832	3300005713	Tropical Forest Soil	MTSSKASGANGWRKSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066903_1010650451	3300005764	Tropical Forest Soil	WRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0066903_1019273842	3300005764	Tropical Forest Soil	MTWSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMKGVRLPSTI*
Ga0066903_1024474262	3300005764	Tropical Forest Soil	MTSSKASGANGWRSSSGLPQATVRSTGVNGPGRPRARMNGVRLPSTM*
Ga0066903_1025030852	3300005764	Tropical Forest Soil	WRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM*
Ga0066903_1034043332	3300005764	Tropical Forest Soil	TSSKASGGNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0081455_106385822	3300005937	Tabebuia Heterophylla Rhizosphere	MTWSKASGANGCRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSVM*
Ga0075428_1021628222	3300006844	Populus Rhizosphere	ASGGNGWRSSSGRPQATARSTGENGPGRPRARRNGVRLPSMM*
Ga0075426_110761271	3300006903	Populus Rhizosphere	MTSSKASGANGWRRSSGLPQATVRSTGVNGPGRPRARMNGVRLPSTM*
Ga0099791_100052492	3300007255	Vadose Zone Soil	MTSSKASGANGWRKSSGRPHSTARSTGVNGPGRPRARMNGVRLPSTM*
Ga0116221_10248421	3300009523	Peatlands Soil	SGENGWRSNSGRPHCTARSTGVNGPGLPRALMNGVRLPSTM*
Ga0126384_108397652	3300010046	Tropical Forest Soil	SGGNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0126382_125137551	3300010047	Tropical Forest Soil	RMTSSKASGGNGWRNSSGRPQATARSTGVNGPGRPRARMNGVRLPSVM*
Ga0126370_114245201	3300010358	Tropical Forest Soil	PRMTSSKASGGNGWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTI*
Ga0126372_109997582	3300010360	Tropical Forest Soil	SSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0126378_109129412	3300010361	Tropical Forest Soil	ANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0126378_118249912	3300010361	Tropical Forest Soil	MSNASGANGWRSSSGRPHWTARSTGVKGPGLPRALRKGVRLPSMM*
Ga0134127_103281352	3300010399	Terrestrial Soil	SGLNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0137374_100259415	3300012204	Vadose Zone Soil	MTSSKASGGNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0137380_115682432	3300012206	Vadose Zone Soil	MTWSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMKGVRLPSMM*
Ga0137371_102488951	3300012356	Vadose Zone Soil	MTSSKASGGNGWRRSSGRPQATARSTGVNGPGRPRARMNGVRLPSMM*
Ga0137358_105331521	3300012582	Vadose Zone Soil	RKSSGRPHSTARSTGVNGPGRPRARMNGVRLPSTM*
Ga0137398_108780082	3300012683	Vadose Zone Soil	MTRSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0162653_1000181472	3300012937	Soil	MTKSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0164301_105221852	3300012960	Soil	NGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM*
Ga0126369_105920771	3300012971	Tropical Forest Soil	ASGANGWRSSSGLPQATVRSTGVNGPGRPRARMNGVRLPSTI*
Ga0164308_106250381	3300012985	Soil	MTSSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMKGVRLPSTM*
Ga0181536_105078781	3300014638	Bog	ASGANGWRSKSGRPHCTARSTGVNGPGLPRALMNGVRLPSTI*
Ga0167643_10515421	3300015089	Glacier Forefield Soil	ASGANGWRSNSGRPHCTARSTGVNGPGLPRALMNGVRLPSMM*
Ga0182033_115975692	3300016319	Soil	GWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM
Ga0182033_121533702	3300016319	Soil	WRNSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0182040_104191641	3300016387	Soil	RMTSSKASGGNGWRNSSGRPQATARSTGVKGPGRPRARMNGVRLPSTM
Ga0182037_102363511	3300016404	Soil	GWRKSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0182039_105442082	3300016422	Soil	WRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM
Ga0182744_11122602	3300017553	Compost	ANGWRSSSGRPHCTARSTGVNGPGLPRALMKGVRLPSTI
Ga0187782_105267442	3300017975	Tropical Peatland	TWSKASGAKGWRSSSGRPHCTARSTGVNGPGLPRALMNGVRLPSTM
Ga0184608_100261443	3300018028	Groundwater Sediment	MTWSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0184611_12431191	3300018067	Groundwater Sediment	GWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0184624_103448922	3300018073	Groundwater Sediment	MTWSKVSGGNGWRSSSGLPQATARSTGVNGPGRPRALMKGVRLPSMM
Ga0184624_104068412	3300018073	Groundwater Sediment	ANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0187772_100061069	3300018085	Tropical Peatland	GWRSSSGRPHSTARSTGVNGPGRPRALMKGVRLPSTM
Ga0066662_123886162	3300018468	Grasslands Soil	MTSSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0190271_123218572	3300018481	Soil	MTWSKAAGLSGWRSSSGRRQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0066669_112320492	3300018482	Grasslands Soil	MTSSKASGANGWRSSSGLPQATVRSTGVNGPGRPRARMNGVRLPSTM
Ga0173481_104513402	3300019356	Soil	SGLNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0193728_10569182	3300019890	Soil	MSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0193731_10278772	3300020001	Soil	MTRSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0193730_11525322	3300020002	Soil	MTWSKASGLNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0193696_10416021	3300020016	Soil	RMTWSKASGLNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0210407_107636482	3300020579	Soil	MTSSNASGANGWRSSSGLPQATVRSTGVNGPGRPRARMNGVRLPSTM
Ga0179596_100710442	3300021086	Vadose Zone Soil	MTSSKASGANGWRKSSGRPHSTARSTGVNGPGRPRARMNGVRLPSTM
Ga0210389_104233611	3300021404	Soil	WRSNSGRPHCTARSTGVNGPGLPRALMNGVRLPSMM
Ga0222621_10024613	3300021510	Groundwater Sediment	MTKSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0207709_105173522	3300025935	Miscanthus Rhizosphere	RSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0207683_100340352	3300026121	Miscanthus Rhizosphere	MTWSKASDLNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0209154_11263412	3300026317	Soil	MTSSKASGGNGWRKSSGRPHSTARSTGVNGPGRPRARMNGVRLPSTM
Ga0209689_10223402	3300027748	Soil	MTSSKASGGNGWRKSSGRPHSTARSTGENGPGRPRARMNGVRLPSTM
Ga0209465_101563301	3300027874	Tropical Forest Soil	SSKASGGNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0209283_107014071	3300027875	Vadose Zone Soil	KASGGNGWRNSSGRPHSTARSTGVNGPGRPRARMNGVRLPSTM
Ga0209488_102844931	3300027903	Vadose Zone Soil	GANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0307295_101685212	3300028708	Soil	SGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0307293_101187002	3300028711	Soil	SNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0307309_100952411	3300028714	Soil	WRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0307306_100410872	3300028782	Soil	MTMSNASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0307300_101180101	3300028880	Soil	ASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0307498_103745562	3300031170	Soil	MTWSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMKGVRLPSMM
Ga0318516_103930011	3300031543	Soil	NGWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM
Ga0318541_101031422	3300031545	Soil	MTSSKASGGNGWRKSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0310915_101691502	3300031573	Soil	MTSSKASGANGWRSSSGRPQTTARSTGVNGPGRPRARMNGVRLPSTM
Ga0318555_100570322	3300031640	Soil	NGCRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0318555_101208401	3300031640	Soil	MTSSKASGGNGWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM
Ga0318493_103191492	3300031723	Soil	SKASGGNGWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM
Ga0318521_101097892	3300031770	Soil	TQPRMTSSKASGANGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0318521_103036782	3300031770	Soil	RMTWSNASGENGWRSSRGRPHWTARSTGVNGPGLPRALRKGVRLPSTM
Ga0318547_102084762	3300031781	Soil	NGWRKSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0318529_104152362	3300031792	Soil	TQPRMTSSKASGGNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0318557_100524551	3300031795	Soil	NGWRSNSGRPHCTARSTGVNGPGLPRAFMKGVRLPSTI
Ga0318567_104085071	3300031821	Soil	ASGGNGWRSSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0318567_105413841	3300031821	Soil	GNGWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM
Ga0306919_111785822	3300031879	Soil	NGWRSSRGRPHWTARSTGVNGPGLPRALRKGVRLPSMM
Ga0318551_106707121	3300031896	Soil	SGGNGWRNSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0310916_102974212	3300031942	Soil	ASGGNGWRSSSGRPQATARSTGENGPGRPRARMNGVRLPSTM
Ga0318507_100335692	3300032025	Soil	QPRMTSSKASGGNGWRNSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0310911_107186291	3300032035	Soil	NGWRNSSGRPQATARSTGVKGPGRPRARMNGVRLPSTM
Ga0318533_102394892	3300032059	Soil	RKSSGRPQATARSTGVNGPGRPRARMNGVRLPSTM
Ga0318540_100879842	3300032094	Soil	RMTSSKASGANGWRSSSGRPQTTARSTGVNGPGRPRARMNGVRLPSTM
Ga0310914_100124591	3300033289	Soil	RITWSKSSGANGWRSRSGRPHCTARSTGVNGPGLPRALMKGVRLPSTI

Hidden Markov Model


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