Metagenome / Metatranscriptome Family F096813

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096813
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	105 residues
Representative Sequence	MKFWRFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTMSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK
Number of Associated Samples	78
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.35 %
% of genes near scaffold ends (potentially truncated)	24.04 %
% of genes from short scaffolds (< 2000 bps)	82.69 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.885 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.961 % of family members)
Environment Ontology (ENVO)	Unclassified (46.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.231 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.37% β-sheet: 6.48% Coil/Unstructured: 73.15%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00571	CBS	19.23
PF01068	DNA_ligase_A_M	5.77
PF01569	PAP2	4.81
PF00072	Response_reg	3.85
PF07043	DUF1328	1.92
PF07722	Peptidase_C26	1.92
PF08241	Methyltransf_11	0.96
PF10711	DUF2513	0.96
PF02719	Polysacc_synt_2	0.96
PF07589	PEP-CTERM	0.96
PF12680	SnoaL_2	0.96
PF00589	Phage_integrase	0.96
PF00355	Rieske	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	5.77
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	5.77
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.92
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.92
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.92
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	1.92
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
All Organisms	root	All Organisms	47.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
cellular organisms	root	All Organisms → cellular organisms	47.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	15.38 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	6.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11.54 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	6.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.88 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	2.88 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.54 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	6.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2.88 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.69 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.69 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002886\|JGI25612J43240_1073314	Not Available	535	Open in IMG/M
3300004643\|Ga0062591_100183981	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300005294\|Ga0065705_10449839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	826	Open in IMG/M
3300005295\|Ga0065707_10592074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	695	Open in IMG/M
3300005328\|Ga0070676_10748789	Not Available	717	Open in IMG/M
3300005467\|Ga0070706_100095171	All Organisms → cellular organisms → Bacteria	2764	Open in IMG/M
3300005468\|Ga0070707_100485197	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005471\|Ga0070698_100029143	All Organisms → cellular organisms → Bacteria	5729	Open in IMG/M
3300005549\|Ga0070704_100267622	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300005549\|Ga0070704_101095515	Not Available	723	Open in IMG/M
3300006845\|Ga0075421_100979173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	959	Open in IMG/M
3300007258\|Ga0099793_10378285	Not Available	694	Open in IMG/M
3300009090\|Ga0099827_10703050	Not Available	873	Open in IMG/M
3300009093\|Ga0105240_12372592	Not Available	549	Open in IMG/M
3300009143\|Ga0099792_10382565	All Organisms → cellular organisms → Bacteria → Terrabacteria group	857	Open in IMG/M
3300009147\|Ga0114129_10058835	All Organisms → cellular organisms → Bacteria	5375	Open in IMG/M
3300009553\|Ga0105249_10026517	All Organisms → cellular organisms → Bacteria	5222	Open in IMG/M
3300011269\|Ga0137392_10161838	All Organisms → cellular organisms → Bacteria	1813	Open in IMG/M
3300011271\|Ga0137393_10085291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2549	Open in IMG/M
3300012202\|Ga0137363_10835090	Not Available	782	Open in IMG/M
3300012203\|Ga0137399_10039822	All Organisms → cellular organisms → Bacteria	3326	Open in IMG/M
3300012205\|Ga0137362_11142248	Not Available	661	Open in IMG/M
3300012211\|Ga0137377_10752606	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	908	Open in IMG/M
3300012349\|Ga0137387_10111660	All Organisms → cellular organisms → Bacteria	1917	Open in IMG/M
3300012355\|Ga0137369_10209497	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300012359\|Ga0137385_10581018	Not Available	943	Open in IMG/M
3300012359\|Ga0137385_11080941	Not Available	661	Open in IMG/M
3300012685\|Ga0137397_10619567	Not Available	805	Open in IMG/M
3300012922\|Ga0137394_10118722	Not Available	2237	Open in IMG/M
3300012923\|Ga0137359_10673121	Not Available	903	Open in IMG/M
3300012925\|Ga0137419_11026055	Not Available	684	Open in IMG/M
3300012929\|Ga0137404_10047243	All Organisms → cellular organisms → Bacteria	3281	Open in IMG/M
3300012929\|Ga0137404_10497457	Not Available	1087	Open in IMG/M
3300012944\|Ga0137410_10069567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2549	Open in IMG/M
3300012944\|Ga0137410_11476205	Not Available	593	Open in IMG/M
3300015245\|Ga0137409_10550445	Not Available	981	Open in IMG/M
3300015264\|Ga0137403_10091551	All Organisms → cellular organisms → Bacteria	3057	Open in IMG/M
3300017997\|Ga0184610_1202563	Not Available	663	Open in IMG/M
3300018000\|Ga0184604_10009235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2021	Open in IMG/M
3300018000\|Ga0184604_10032022	Not Available	1343	Open in IMG/M
3300018027\|Ga0184605_10050127	All Organisms → cellular organisms → Bacteria	1775	Open in IMG/M
3300018027\|Ga0184605_10075390	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300018027\|Ga0184605_10121818	Not Available	1162	Open in IMG/M
3300018027\|Ga0184605_10362388	Not Available	654	Open in IMG/M
3300018028\|Ga0184608_10033168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1956	Open in IMG/M
3300018028\|Ga0184608_10052835	Not Available	1604	Open in IMG/M
3300018028\|Ga0184608_10092516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1253	Open in IMG/M
3300018051\|Ga0184620_10101385	Not Available	888	Open in IMG/M
3300018051\|Ga0184620_10258955	Not Available	584	Open in IMG/M
3300018054\|Ga0184621_10015193	All Organisms → cellular organisms → Bacteria	2289	Open in IMG/M
3300018054\|Ga0184621_10062525	Not Available	1267	Open in IMG/M
3300018061\|Ga0184619_10339990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	685	Open in IMG/M
3300018061\|Ga0184619_10404209	Not Available	616	Open in IMG/M
3300018071\|Ga0184618_10102741	Not Available	1123	Open in IMG/M
3300018071\|Ga0184618_10233232	Not Available	776	Open in IMG/M
3300018429\|Ga0190272_11560177	Not Available	675	Open in IMG/M
3300018429\|Ga0190272_11706177	Not Available	652	Open in IMG/M
3300019254\|Ga0184641_1107951	Not Available	700	Open in IMG/M
3300019254\|Ga0184641_1208824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1141	Open in IMG/M
3300019254\|Ga0184641_1439007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	841	Open in IMG/M
3300019259\|Ga0184646_1469784	Not Available	571	Open in IMG/M
3300019789\|Ga0137408_1041850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1898	Open in IMG/M
3300019878\|Ga0193715_1020573	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300019878\|Ga0193715_1061572	Not Available	798	Open in IMG/M
3300019878\|Ga0193715_1101179	Not Available	577	Open in IMG/M
3300019879\|Ga0193723_1099186	Not Available	824	Open in IMG/M
3300019879\|Ga0193723_1140488	Not Available	655	Open in IMG/M
3300019879\|Ga0193723_1152511	Not Available	618	Open in IMG/M
3300019881\|Ga0193707_1048227	Not Available	1361	Open in IMG/M
3300019882\|Ga0193713_1015112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2312	Open in IMG/M
3300019886\|Ga0193727_1043553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1477	Open in IMG/M
3300020001\|Ga0193731_1032009	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1385	Open in IMG/M
3300020002\|Ga0193730_1187256	Not Available	516	Open in IMG/M
3300020004\|Ga0193755_1107987	Not Available	876	Open in IMG/M
3300020006\|Ga0193735_1149284	Not Available	608	Open in IMG/M
3300020006\|Ga0193735_1166909	Not Available	555	Open in IMG/M
3300021073\|Ga0210378_10128303	Not Available	983	Open in IMG/M
3300021078\|Ga0210381_10148074	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300021080\|Ga0210382_10107845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1165	Open in IMG/M
3300021080\|Ga0210382_10146540	Not Available	1010	Open in IMG/M
3300021080\|Ga0210382_10171044	Not Available	937	Open in IMG/M
3300021344\|Ga0193719_10078082	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300021432\|Ga0210384_10006146	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	12858	Open in IMG/M
3300022195\|Ga0222625_1624077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	717	Open in IMG/M
3300022534\|Ga0224452_1017597	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300022756\|Ga0222622_10821392	Not Available	680	Open in IMG/M
3300022756\|Ga0222622_10973984	Not Available	623	Open in IMG/M
3300024330\|Ga0137417_1311919	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	864	Open in IMG/M
3300025907\|Ga0207645_10286971	Not Available	1094	Open in IMG/M
3300025910\|Ga0207684_10590652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	949	Open in IMG/M
3300025922\|Ga0207646_10308082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1431	Open in IMG/M
3300025923\|Ga0207681_11183003	Not Available	642	Open in IMG/M
3300026285\|Ga0209438_1073472	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1111	Open in IMG/M
3300027903\|Ga0209488_10112886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2042	Open in IMG/M
3300028380\|Ga0268265_12688399	Not Available	503	Open in IMG/M
3300028536\|Ga0137415_10768922	Not Available	774	Open in IMG/M
3300028715\|Ga0307313_10249547	Not Available	552	Open in IMG/M
3300028791\|Ga0307290_10025629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2075	Open in IMG/M
3300028814\|Ga0307302_10147432	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1139	Open in IMG/M
3300028828\|Ga0307312_10591184	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300029636\|Ga0222749_10022130	Not Available	2637	Open in IMG/M
3300030830\|Ga0308205_1013923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	858	Open in IMG/M
3300030830\|Ga0308205_1017844	Not Available	790	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.31%
Host-Associated	Host-Associated	7.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.50%
Aquatic	Environmental → Aquatic	29.81%
Plants	Host-Associated → Plants	7.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.50%
Sediment	Environmental → Aquatic → Sediment	20.19%
Freshwater	Environmental → Aquatic → Freshwater	9.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	20.19%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.62%
Loam	Environmental → Terrestrial → Soil → Loam	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	20.19%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.12%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	17.31%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	9.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25612J43240_10733141	3300002886	Grasslands Soil	MKFWRFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRMTDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK*
Ga0062591_1001839811	3300004643	Soil	MKTRRVIGIGVFTIGTLVGTVWAVQPSKGDMDFCNQKAAQVSKATPVTPGAGTTPPSPSQPGSNPTGGRMTDSTQPGASPSQLGMAPRGETEPAYRQAYLACINERAK*
Ga0065705_104498392	3300005294	Switchgrass Rhizosphere	MKFWRFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTMSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK*
Ga0065707_105920741	3300005295	Switchgrass Rhizosphere	MKFWRFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTMSPPTPQSGNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK*
Ga0070676_107487891	3300005328	Miscanthus Rhizosphere	MKTRRVIGIGVFTIGTLVGTVWAVQPSKGDMDFCNQKAAQVSKATPVTPGAGTTPPSPSQPGSNPTGGRMTDSTQPGASPSQLGMAPRGRD*
Ga0070706_1000951712	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKLWRFVGTGALAVGTIAGAALAAQPTKGDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK*
Ga0070707_1004851973	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKSWRLIGTGILTIGTVAGVAWAATPTQGDMDFCNQKAAQASKATPVQPGTTSPPSTAQPGSNPTGGRMTDSSQPGTPPSQLGMAPIGETDPAYRQAYLGCINERTK*
Ga0070698_1000291434	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKLWRFVGTGALAVGTIAGAALAAQPTKGDMDFCDHKTAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK*
Ga0070704_1002676224	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKFWRFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTRTMSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETE
Ga0070704_1010955152	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRATDSTQSGTSPSQPGKAPIGEEPVYRQTYLACIHERAK*
Ga0075421_1009791731	3300006845	Populus Rhizosphere	MKFWRFIGTGILTIGTLAGTAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTTSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGEAEPAYRQAYLACINER
Ga0099793_103782851	3300007258	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGAALAAQPTNGDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYL
Ga0099827_107030503	3300009090	Vadose Zone Soil	MRLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDHNAAQVNKAAPVKPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK*
Ga0105240_123725921	3300009093	Corn Rhizosphere	FTIGTLVGTVWAAQPSKGDMDFCNQKAAQVSKATPVTPGAGTTPPSPSQPGSNPTGGRMTDSTQPGASPSQLGMAPRGETEPAYRQAYLACINERAK*
Ga0099792_103825651	3300009143	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGAALAAQPTKGDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHEPAK*
Ga0114129_100588357	3300009147	Populus Rhizosphere	MKFWRFIGTGILTIGTLAGTAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTTSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGEAEPAYRQAYLACINERTK*
Ga0105249_100265173	3300009553	Switchgrass Rhizosphere	MKTRRVIGIGAFTIGTLVGTVWAAQPSKGDMDFCNQKAAQVSKATPVTPGAGTTPPSPSQPGSNPTGGRMTDSTQPGASPSQLGMAPRGRD*
Ga0137392_101618382	3300011269	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGAALAAQPTKGDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRLTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK*
Ga0137393_100852912	3300011271	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK*
Ga0137363_108350901	3300012202	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGAALAAQPTKGDMDFCDRKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK*
Ga0137399_100398223	3300012203	Vadose Zone Soil	MKFRRFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK*
Ga0137362_111422482	3300012205	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGAALAAQPTKGDMDFCDRKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAP
Ga0137377_107526062	3300012211	Vadose Zone Soil	MKRWIIGTGVLTIGTLVGAAWAAAPSKGDMDFCNQKAAQVSKATPVKPGTGTTRPPTPQSGSNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACINERTK*
Ga0137387_101116603	3300012349	Vadose Zone Soil	MPSRLERNLRSVGHKSILEEGGAMKLWRFIGTGVLTIGTLAGAAGAAQPTKGDMDFCNQKAAQVSKATPIKPGAGTTPQPGSNPTGGRVTDSSQPGTSPSQLGMAPIGETEPAYRQAYLACINERAK*
Ga0137369_102094972	3300012355	Vadose Zone Soil	MKFWRFIGTGFLTIGILAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTMSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK*
Ga0137385_105810182	3300012359	Vadose Zone Soil	MNLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDHNAAQVNKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK*
Ga0137385_110809412	3300012359	Vadose Zone Soil	RFIGTGVLTIGTLAGSAWAPQPPTGDMDFCNQKAAQVSKATPMKPGAGTTPQPGSNPTGGRVTDSSQPGTSPSQLGMAPIGETEPAYRQAYLACINERAK*
Ga0137397_106195672	3300012685	Vadose Zone Soil	MKFWRFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK*
Ga0137394_101187222	3300012922	Vadose Zone Soil	MKRWRFIGTGILAIGTLASAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK*
Ga0137359_106731211	3300012923	Vadose Zone Soil	MKFWRFIGTGILTIGALAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGE
Ga0137419_110260551	3300012925	Vadose Zone Soil	MKRWRFIGRGILTIGTLAGAAWAAQPSKEDMDFCNQKAAQVSKATPVKPGTGTTRPPAPQSGSNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYR
Ga0137404_100472432	3300012929	Vadose Zone Soil	MKFWRFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTKSPPTPQSGNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK*
Ga0137404_104974571	3300012929	Vadose Zone Soil	MNLWRFVGTGALAVGTIAGAALAAQPTKDDMDFCDQKAAEVSKAAPVKPGAGTTPPTPQPGSNPTDGRVTDSTQSGTSPSQPGLAPSGEDPVYRQAYLACIHERAK*
Ga0137410_100695673	3300012944	Vadose Zone Soil	MKFWGFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK*
Ga0137410_114762051	3300012944	Vadose Zone Soil	MKRWRFIGRGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTRPPAPQSGSNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK*
Ga0137409_105504451	3300015245	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGALAAQPTKGDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEKPVYRQAYLACIHERAK*
Ga0137403_100915514	3300015264	Vadose Zone Soil	MKFWRFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK*
Ga0184610_12025632	3300017997	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRASDSTQSGTSPSQPGMAPIGEEPVYRQTYLACINERAK
Ga0184604_100092353	3300018000	Groundwater Sediment	MKGWRFGTGILVVATFAGAAWAATPTKADMDLCNQKAAQVSKATAVKPGTRTTPPPTPQSGSNPTGGRVTDSSQPGTPPSALGMASIGETDQAYRQAYLACINERAK
Ga0184604_100320222	3300018000	Groundwater Sediment	MKRWRFIGAGILAIGTLASAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPPSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0184605_100501273	3300018027	Groundwater Sediment	MKFWTFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPTTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0184605_100753902	3300018027	Groundwater Sediment	MKLWRFVGTGALAVGTIAGVALAAQPTKDDMDFCDQKAAEVSKAAPVKPGAGTTPPSAPPPGSNPTDGRVTDSTKSGTSPSQPGMAPIGEEPVYRQAYLACIQERAK
Ga0184605_101218182	3300018027	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVGKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0184605_103623881	3300018027	Groundwater Sediment	PMKGWRFGTGILVVATFAGAAWAATPTKADMDLCNQKAAQVSKATAVKPGTRTTPPPTPQSGSNPTGGRVTDSSQPGTPPSALGMASIGETDQAYRQAYLACINERAK
Ga0184608_100331684	3300018028	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDQKAAQVGRAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTPSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0184608_100528352	3300018028	Groundwater Sediment	MKRWRFIGTGILAIGTLASAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0184608_100925162	3300018028	Groundwater Sediment	MKFWRFIGTGILTIGTLAGSAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPTTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0184620_101013852	3300018051	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRATDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0184620_102589551	3300018051	Groundwater Sediment	MKRWRFIGTGILAIGTLASAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPPSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0184621_100151933	3300018054	Groundwater Sediment	MKFWRFIGTGILTIGTLAGSAGGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTMSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK
Ga0184621_100625251	3300018054	Groundwater Sediment	MKRWRFIGTGILAIGTLASAAWAAEPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0184619_103399902	3300018061	Groundwater Sediment	MKFWTFIGTGILTIGTLVGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPTTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETE
Ga0184619_104042091	3300018061	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRASDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0184618_101027411	3300018071	Groundwater Sediment	MRSWRFIGTGILAIGTLATAAWAAQPSKGDMDFCNKKAAQVSKATPVKPGTGTTPPPSPPSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISDRTK
Ga0184618_102332323	3300018071	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIQERAK
Ga0190272_115601771	3300018429	Soil	MRLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDQKAAEVSKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGIAPSGEEPVYRQTYLACIHERAK
Ga0190272_117061771	3300018429	Soil	MKFWRFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTSQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0184641_11079511	3300019254	Groundwater Sediment	MKRWRVGTDILVVATFAGAAWAATPTKADMDLCNQKAAQVSKATAVKPGTRTTPPPTPQSGSNPTGGRVTDSSQPGTPPSALGMASIGETDQAYRQAYL
Ga0184641_12088242	3300019254	Groundwater Sediment	MKLWRFIGTGVLSIGTVAGAAWAAQPTKGDMDFCNQKAAQVSKATPVKPGARTTPPSTPQPGSNPTGGRMTDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERAK
Ga0184641_14390072	3300019254	Groundwater Sediment	MKFWTFIGTGILTIGTLAGSAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPTTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACISERTK
Ga0184646_14697842	3300019259	Groundwater Sediment	MKFWTFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPTTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK
Ga0137408_10418502	3300019789	Vadose Zone Soil	MKFWRFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0193715_10205732	3300019878	Soil	MKFWTFIGTGILTIGTLAGSAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTSQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK
Ga0193715_10615721	3300019878	Soil	MRLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPSGGRATDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0193715_11011792	3300019878	Soil	MKRWRFIGTGTLAIGTLASAGWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPPSGTNPTGGRITDSSQPGTSPSQLGMAPIGET
Ga0193723_10991862	3300019879	Soil	MKPWRFVGTGALAVGTIAGVALAAQPTKEDMDYCDHKAAQVSQAAPVKPGAGTTPPSAPPPGSNPTDGRVTDSTKSGTSPSQPGMAPIGEEPVYRQAYLACIQERTK
Ga0193723_11404881	3300019879	Soil	MKRWTFIGTGILAIGTLATAAWAAQPSKGDMDFCNKKAAQVSKATPVKPGTGTTPPPSPQSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0193723_11525112	3300019879	Soil	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0193707_10482272	3300019881	Soil	MERWRFIGTGILAIGTLASAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0193713_10151123	3300019882	Soil	MRLWRFVGTGALTVGTIAGTALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAR
Ga0193727_10435532	3300019886	Soil	MKFWRFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTMSPPTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK
Ga0193731_10320093	3300020001	Soil	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTPSGTFPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0193730_11872561	3300020002	Soil	MKLWRFIGTGVLTIGTVAGAAWAAQPTKGDMDFCNQKAAQVSKATPVKPGARTTPPSTPQPGSNPTGGRMTDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERAK
Ga0193755_11079872	3300020004	Soil	MRLWRFVGTGALTVGTIAGTALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRATDSTQSGTSPSQPIGEEPVYRQTYLACIHERAR
Ga0193735_11492842	3300020006	Soil	MKFWTFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTSQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0193735_11669091	3300020006	Soil	TIAGAALAAQPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRASDSTQSGTSPSQPGMAPISGEPVYRQTYLACINERAK
Ga0210378_101283032	3300021073	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGRAPIGEEPVYRQTYLACIHERAK
Ga0210381_101480741	3300021078	Groundwater Sediment	EGPMKCWRFIGTGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTSQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0210382_101078451	3300021080	Groundwater Sediment	TGILVVATFAGAAWAATPTKADMDLCNQKAAQVSKATAVKPGTRTTPPPTPQSGSNPTGGRVTDSSQPGTPPSALGMASIGETDQAYRQAYLACINERAK
Ga0210382_101465401	3300021080	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAEPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRASDSTQSGTSPSQPGMAPISGEPVYRQTYLACINERAK
Ga0210382_101710442	3300021080	Groundwater Sediment	LASAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPPSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACINERTK
Ga0193719_100780822	3300021344	Soil	MKRWRFIGTGTLAIGTLASAGWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0210384_100061461	3300021432	Soil	MRRGRLIGPGILTIGILAGTALAASPTKGDMDFCNMKAAQVSKAPTQPGAGATTRQPAPGTRSAQPGSNPTGGRVTDSSPPGTPPSQLGMDSIGETDQNYRQAYLACIADRTK
Ga0222625_16240772	3300022195	Groundwater Sediment	MKFWTFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTSQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACINERTK
Ga0224452_10175974	3300022534	Groundwater Sediment	MRLWRFVGTGALAVGTIAGAALAAQPTKEDMDFCDQKAAQVGRAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0222622_108213923	3300022756	Groundwater Sediment	AGAALAAQPTKEDMDFCDQKAAQVSKAAPVQPGAGTTPPSTPQPGSNPTGGRVTDSTQSGTSPSQPGMAPIGEEPVYRQTYLACIHERAK
Ga0222622_109739841	3300022756	Groundwater Sediment	MKRWRFIGTGILAIGTLASAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGTNPTGGRITDSSQPGTSPSQLGMAP
Ga0137417_13119191	3300024330	Vadose Zone Soil	MKRWRFIGTGILAIGTLASAAWAAQPSKEDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGSNPTGGRITDSSQPGTAPSQLGMAPIGTEPTYQQAYLACISERTK
Ga0207645_102869712	3300025907	Miscanthus Rhizosphere	MKTRRVIGIGVFTIGTLVGTVWAVQPSKGDMDFCNQKAAQVSKATPVTPGAGTTPPSPSQPGSNPTGGRMTDSTQPGASPSQLGMAPRGRD
Ga0207684_105906521	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GAALAAQPTKGDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK
Ga0207646_103080821	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKSWRLIGTGILTIGTVAGVAWAATPTQGDMDFCNQKAAQASKATPVQPGTTSPPSTAQPGSNPTGGRMTDSSQPGTPPSQLGMAPIGETDPAYRQAYLGCINERTK
Ga0207681_111830031	3300025923	Switchgrass Rhizosphere	MKTRRVIGIGVFTIGTLVGTVWAVQPSKGDMDFCNQKAAQVSKATPVTPGAGTTPPSPSQPGSNPTGGRMTDSTQPGASPSQLGMAPRGETEPAYRQAYLACINERAK
Ga0209438_10734721	3300026285	Grasslands Soil	MKFWRFIGTGILTIGTLAGAAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTPQSGSNPTGGRMTDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0209488_101128863	3300027903	Vadose Zone Soil	MKLWRFVGTGALAVGTIAGAALAAQPTKGDMDFCDHKAAQVSKAAPVKPGAGTTPPSTPQPGSNTTGGRVTDSTQSSGTSPSQLGMAPIGEEPVYRQAYLACIHERAK
Ga0268265_126883991	3300028380	Switchgrass Rhizosphere	MKTRRVIGIGVFTIGTLVGTVWAVQPSKGDMDFCNQKAAQVSKATPVTPGAGTTPPSPSQPGSNPTGGRMTDSTQPGASPSQLGMAPR
Ga0137415_107689222	3300028536	Vadose Zone Soil	MKRWRFIGRGILTIGTLAGAAWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPQSGSNPTGGRITDSSQPGTAPSQLGMAPIGTEPTYQQAY
Ga0307313_102495471	3300028715	Soil	MKLGRFIGTGVLTIGTVAGVAWAAQPSKGDMDFCDQKAAQVSKATPVKPGTRTTPPPTPQSGSNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLACISERTK
Ga0307290_100256292	3300028791	Soil	MKFWTFIGTGILTIGTLAGSAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTSQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0307302_101474321	3300028814	Soil	IGTLAGAAWAAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPTTPQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACVNERTK
Ga0307312_105911842	3300028828	Soil	MKRWRFIGTGTLAIGTLASAGWAAQPSKGDMDFCNQKAAQVSKATPVKPGTGTTPPPSPPSGTNPTGGRITDSSQPGTSPSQLGMAPIGETEPAYRQAYLA
Ga0222749_100221304	3300029636	Soil	MKYGRLIGAGILTIGTLAGPASAASPTKGDMDFCNMKAAQVSKAPTQPGAGATTRQPAPGTRSAQPGSNPTGGRITDSSPPGTPPSQLGMDSIGETDQRYRQAYLACIADRTK
Ga0308205_10139231	3300030830	Soil	MKFWTFIGTGILTIGTLAGSAWGAQPSKGDMDFCNQKAAQVSKTTPVKPGTGTVSPPTSQSGSNPTGGRITDSSQPGTSPAQLGMAPIGETEPAYRQAYLACISERTK
Ga0308205_10178442	3300030830	Soil	MKRWRFGTDILVVATFAGAAWAATPTKADMDLCNQKAAQVSKATAVKPGTRTTPPPTPQSGSNPTGGRVTDSSQPGTPPSALGMASIGETDQAYRQAYLACINERAK
Ga0307471_1016498932	3300032180	Hardwood Forest Soil	MKYGRLPEAGILTIGTLAGAASAASPTKGDMDFCNMKAAQVSKAPTQPGAGATTRQPAPGTRSAQPGSNPTGGRITDSSPPETPPSQLGMDSIGETDQNYRQAYLAC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096813

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences