Metagenome / Metatranscriptome Family F096765

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096765
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	68 residues
Representative Sequence	MPSRYIGKKRDTGRDAEVPAELSQREAQDRAKGERGQARSPVDAQHVEAPKRRDNARGHREGNRG
Number of Associated Samples	77
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	86.54 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.231 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (44.231 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.885 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.13% β-sheet: 0.00% Coil/Unstructured: 83.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF07690	MFS_1	25.96
PF05368	NmrA	3.85
PF02082	Rrf2	3.85
PF13472	Lipase_GDSL_2	2.88
PF03544	TonB_C	1.92
PF13620	CarboxypepD_reg	1.92
PF04389	Peptidase_M28	1.92
PF10067	DUF2306	0.96
PF02585	PIG-L	0.96
PF10294	Methyltransf_16	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	3.85
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	3.85
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	3.85
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	3.85
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	3.85
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	3.85
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	3.85
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	3.85
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.92
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.19 %
Unclassified	root	N/A	29.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.19 %
Unclassified	root	N/A	29.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.23 %
Unclassified	root	N/A	29.81 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.81 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	23.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.81 %
Discoba	clade	All Organisms → cellular organisms → Eukaryota → Discoba	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.81 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	23.08 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.92 %
Euglenozoa	phylum	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.81 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	16.35 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	3.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.92 %
Kinetoplastea	class	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.81 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	16.35 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.92 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.81 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	15.38 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1.92 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.96 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.81 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	4.81 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
unclassified Roseomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas	1.92 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	1.92 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.96 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.81 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4.81 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.85 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1.92 %
Roseomonas sp. B5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. B5	1.92 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.96 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_2926_length_1688_cov_7.921208	Not Available	1720	Open in IMG/M
3300000955\|JGI1027J12803_108753050	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300000956\|JGI10216J12902_104204197	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300004153\|Ga0063455_100480165	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300004156\|Ga0062589_102209705	Not Available	563	Open in IMG/M
3300005093\|Ga0062594_100203807	Not Available	1383	Open in IMG/M
3300005327\|Ga0070658_10959585	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300005327\|Ga0070658_11707096	Not Available	545	Open in IMG/M
3300005328\|Ga0070676_10865685	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300005329\|Ga0070683_100922723	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300005333\|Ga0070677_10541310	Not Available	637	Open in IMG/M
3300005339\|Ga0070660_100325649	Not Available	1263	Open in IMG/M
3300005339\|Ga0070660_100425752	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300005344\|Ga0070661_100845847	Not Available	753	Open in IMG/M
3300005347\|Ga0070668_100116852	All Organisms → cellular organisms → Bacteria	2128	Open in IMG/M
3300005355\|Ga0070671_100085591	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300005355\|Ga0070671_101073973	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300005356\|Ga0070674_100355674	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300005367\|Ga0070667_101417912	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300005439\|Ga0070711_101508917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. B5	586	Open in IMG/M
3300005457\|Ga0070662_101575897	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300005458\|Ga0070681_10356108	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300005530\|Ga0070679_100716374	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300005539\|Ga0068853_101530969	Not Available	646	Open in IMG/M
3300005616\|Ga0068852_101490893	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300005616\|Ga0068852_101891576	Not Available	619	Open in IMG/M
3300005618\|Ga0068864_101299631	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300005718\|Ga0068866_10552062	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300005843\|Ga0068860_102531761	Not Available	533	Open in IMG/M
3300006876\|Ga0079217_10005621	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3737	Open in IMG/M
3300006918\|Ga0079216_10081884	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300006954\|Ga0079219_11856622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. B5	566	Open in IMG/M
3300009789\|Ga0126307_10055520	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3099	Open in IMG/M
3300009789\|Ga0126307_10473366	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1011	Open in IMG/M
3300009789\|Ga0126307_11126745	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	635	Open in IMG/M
3300009840\|Ga0126313_10242392	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1396	Open in IMG/M
3300009840\|Ga0126313_10677615	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	834	Open in IMG/M
3300010040\|Ga0126308_11062404	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	569	Open in IMG/M
3300010041\|Ga0126312_10708646	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	727	Open in IMG/M
3300010045\|Ga0126311_10114278	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1874	Open in IMG/M
3300010166\|Ga0126306_10061042	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300010166\|Ga0126306_10581029	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	892	Open in IMG/M
3300010166\|Ga0126306_11207562	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	622	Open in IMG/M
3300010375\|Ga0105239_11120285	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300010397\|Ga0134124_10988823	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300011332\|Ga0126317_10710895	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300012212\|Ga0150985_101576788	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300012212\|Ga0150985_106439306	Not Available	531	Open in IMG/M
3300012212\|Ga0150985_109825103	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	911	Open in IMG/M
3300012212\|Ga0150985_120645226	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300012469\|Ga0150984_111229788	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	576	Open in IMG/M
3300012469\|Ga0150984_120904246	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300012951\|Ga0164300_10834855	Not Available	575	Open in IMG/M
3300012957\|Ga0164303_10543825	Not Available	753	Open in IMG/M
3300012986\|Ga0164304_10686388	Not Available	776	Open in IMG/M
3300012988\|Ga0164306_11598169	Not Available	562	Open in IMG/M
3300012989\|Ga0164305_10062766	Not Available	2234	Open in IMG/M
3300013102\|Ga0157371_11234566	Not Available	577	Open in IMG/M
3300013104\|Ga0157370_12032568	Not Available	515	Open in IMG/M
3300013296\|Ga0157374_10482974	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300013307\|Ga0157372_10582296	Not Available	1304	Open in IMG/M
3300014969\|Ga0157376_12692718	Not Available	537	Open in IMG/M
3300015371\|Ga0132258_11732894	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300015374\|Ga0132255_101242343	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300021445\|Ga0182009_10173570	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300021445\|Ga0182009_10546005	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300022756\|Ga0222622_10052733	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2307	Open in IMG/M
3300022756\|Ga0222622_11324874	Not Available	530	Open in IMG/M
3300025321\|Ga0207656_10581109	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300025893\|Ga0207682_10055931	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1642	Open in IMG/M
3300025907\|Ga0207645_10044228	All Organisms → cellular organisms → Bacteria	2850	Open in IMG/M
3300025909\|Ga0207705_10080649	All Organisms → cellular organisms → Bacteria	2371	Open in IMG/M
3300025909\|Ga0207705_10828446	Not Available	718	Open in IMG/M
3300025916\|Ga0207663_11415053	Not Available	560	Open in IMG/M
3300025920\|Ga0207649_10707835	Not Available	781	Open in IMG/M
3300025930\|Ga0207701_11152729	Not Available	641	Open in IMG/M
3300025931\|Ga0207644_10214409	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300025932\|Ga0207690_10801919	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300025933\|Ga0207706_11104066	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300025938\|Ga0207704_10039897	All Organisms → cellular organisms → Bacteria	2739	Open in IMG/M
3300025940\|Ga0207691_10124567	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2281	Open in IMG/M
3300025945\|Ga0207679_10966006	Not Available	780	Open in IMG/M
3300025945\|Ga0207679_11001018	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300026088\|Ga0207641_10579630	Not Available	1097	Open in IMG/M
3300027637\|Ga0209818_1087113	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	810	Open in IMG/M
3300028713\|Ga0307303_10112875	Not Available	630	Open in IMG/M
3300031548\|Ga0307408_100868688	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300031548\|Ga0307408_101186536	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	711	Open in IMG/M
3300031731\|Ga0307405_10651827	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	866	Open in IMG/M
3300031938\|Ga0308175_100309260	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300031938\|Ga0308175_100813779	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1023	Open in IMG/M
3300031938\|Ga0308175_100997794	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300031938\|Ga0308175_101095574	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	883	Open in IMG/M
3300031938\|Ga0308175_101141408	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	865	Open in IMG/M
3300031938\|Ga0308175_101485049	Not Available	757	Open in IMG/M
3300031939\|Ga0308174_10088149	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300031939\|Ga0308174_10850641	Not Available	768	Open in IMG/M
3300031939\|Ga0308174_11159716	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300031996\|Ga0308176_10638575	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300031996\|Ga0308176_11262730	Not Available	784	Open in IMG/M
3300031996\|Ga0308176_12669089	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	532	Open in IMG/M
3300032002\|Ga0307416_100396738	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300032074\|Ga0308173_10010143	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	5862	Open in IMG/M
3300034384\|Ga0372946_0272841	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	819	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.96%
Host-Associated	Host-Associated	49.04%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	49.04%
Terrestrial	Environmental → Terrestrial	48.08%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.42%
Sediment	Environmental → Aquatic → Sediment	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.65%
Loam	Environmental → Terrestrial → Soil → Loam	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.23%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	12.50%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_03406220	2140918013	Soil	MQMPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVEAPRKRDNKRGHHEENHD
JGI1027J12803_1087530505	3300000955	Soil	MPSRYIGNKRNTGRDAEVPAELSHREAQDRAKGERGQARSPVDAQHVEAPKRRDNARGHHEGNRG*
JGI10216J12902_1042041973	3300000956	Soil	MPSRNIGKKRDTGRDAEIPAELAKREAQDRPKGGAGRGQAQSPIDAQHVDAPKRQDNARGHRQQRRGR*
Ga0063455_1004801652	3300004153	Soil	MPSRNIGKKRDTGRDAEVPAELSKREAQDRSKGAPGRGRAQSPIDAQHVDAPKRQ
Ga0062589_1022097051	3300004156	Soil	MPSRYIGKKRDTGRDGEVPAELSRREAQDRAKGERGQARSPIDSQHVEAPKRQDNARGHREGNRG*
Ga0062594_1002038072	3300005093	Soil	MPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVEAPRKRDNKRGHHEENHD*
Ga0070658_109595851	3300005327	Corn Rhizosphere	MQMPSRNIGKKRDTGRDTEVPAELAQREAQDRAKGEDRGQARSPIDAQHVDAPKKRDNKRGHHEENHD*
Ga0070658_117070961	3300005327	Corn Rhizosphere	MPSRNIGKKRDTGTDAEVPAELAQREAQDRAKGERGQMRSPIDSQHVDAPRKRDNARGHHEENRGENVD*
Ga0070676_108656852	3300005328	Miscanthus Rhizosphere	MSSRYIGKKRDTGRDAEVPAELARREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREGNHG*
Ga0070683_1009227232	3300005329	Corn Rhizosphere	MKDAGIQRMRNGLRRYRMPSRYIGKKRDTGRDGEVPAELSRREAQDRAKGERGQARSPIDSQHVEAPKRQDNARGHREGNRG*
Ga0070677_105413101	3300005333	Miscanthus Rhizosphere	MASRNIGKKRDTGRDAQIPAELAKREAQDRSKGPTGRGRAQSPIDAQHVDAPKRQDNARGHRQRRGS*
Ga0070660_1003256493	3300005339	Corn Rhizosphere	RNIGKKRDTGRDTEVPAELAQREAQDRAKGEDRGQARSPIDAQHVDAPKKRDNKRGHHEENHD*
Ga0070660_1004257521	3300005339	Corn Rhizosphere	MPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVEAPRKRDNKRGHHEE
Ga0070661_1008458471	3300005344	Corn Rhizosphere	QMPSRNIGKKRDTGRDAEVPAELAEREAQDRAKGDGARSPIDAQHVDAPRKRDNARGHHEENRD*
Ga0070668_1001168522	3300005347	Switchgrass Rhizosphere	MRGCGGAGMRNGLRRYRMPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0070671_1000855912	3300005355	Switchgrass Rhizosphere	MSSRYIGKKRDTGRDAEVPAELSRREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREENHG*
Ga0070671_1010739731	3300005355	Switchgrass Rhizosphere	MPSRYIGKKRDTGRDAEVPAELSHREAQDRAKGERGQARSPVDAQHVEAPKRQDNARGHREGNHG*
Ga0070674_1003556741	3300005356	Miscanthus Rhizosphere	MRGCGGAGMRNGLRGYGMPSRYIGKKRDTGRDGEVPAELSRREAQDRAKGERGQARSPIDSQHVEAPKRQDNARGHREGNRG*
Ga0070667_1014179121	3300005367	Switchgrass Rhizosphere	MPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0070711_1015089171	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPSRYIGNKRNTGRDAEVPAELSHREAQDRAKGERGQARSPVDAQHVEAPKRRDNARGHREGNRG*
Ga0070662_1015758971	3300005457	Corn Rhizosphere	GKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0070681_103561082	3300005458	Corn Rhizosphere	MPSRNIGKKRDTGRDTEVPAELAQREAQDRAKGEDRGQARSPIDAQHVDAPKKRDNKR
Ga0070679_1007163742	3300005530	Corn Rhizosphere	MPSRNIGKKRDTGRDTEVPAELANREAQDRAKGEERGQARSPIDAQHVDAPKKRDNARGHHEENRE
Ga0068853_1015309691	3300005539	Corn Rhizosphere	NIGKKRDTGRDTEVPAELAQREAQDRAKGEDRGQARSPIDAQHVDAPKKRDNKRGHHEENHD*
Ga0068852_1014908932	3300005616	Corn Rhizosphere	MRGCGGAGMRNGLRRYRMSSRYIGKKRDTGRDAEVPAELARREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREGNHG*
Ga0068852_1018915762	3300005616	Corn Rhizosphere	MPSRNIGKKRDTGRDTEVPAELAQREAQDRAKGEDRGQARSPIDAQHVDAPKKRDNKRGHHEENHD*
Ga0068864_1012996312	3300005618	Switchgrass Rhizosphere	MPSRNIGKKRDTGTDAEVPAELAQREAQDRAKGERGQMRSPIDSQHVDAPRKRDNARGHHEENRGEDVD*
Ga0068866_105520622	3300005718	Miscanthus Rhizosphere	RRYRMPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0068860_1025317611	3300005843	Switchgrass Rhizosphere	VRGCGGAGVRGCGDAGMRNGLRRYRMPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0079217_100056215	3300006876	Agricultural Soil	MPSRNIGKKRDTGRDAEVPAELAKREAQDRPKPAGGRGGAESPVDAQHVDAPKRQDNARGHRQQKRR*
Ga0079216_100818843	3300006918	Agricultural Soil	RDTGRDAEIPAELAKREAQDRPKGATGRGRAESPIDAQHVDAPKRQDNARGHRQQRRGT*
Ga0079219_118566221	3300006954	Agricultural Soil	MPSRYIGKKRDTGRDEEIPAELSRREAQSRAQGERGQARSPVDAQHVEAPKRQDNRRGHREGNRG*
Ga0126307_100555202	3300009789	Serpentine Soil	MPSRNIGKKRDTGRDAEIPAELSKREAQDRAKGTAGKGRAQSPVDAQHVDAPKRQDNARGHRQRPAR*
Ga0126307_104733662	3300009789	Serpentine Soil	MPSRNIGKKRDTGRDAEIPAELSKREAQDRAKGATGKGRAQSPIDAQHVNAPKRQDNARGHRQRRGG*
Ga0126307_111267452	3300009789	Serpentine Soil	MPSRNIGKKRDTGRDAEIPAELSKREAQDRARSATGKGRAQSPVDAQHVNAPKRQDNARGHRQQKRS*
Ga0126313_102423922	3300009840	Serpentine Soil	MPSRNVGKKRDTGRDAEIPAELSKREAQDRAKGATGKGRAQSPIDAQHVDAPKRQDNARGHRQRPRG*
Ga0126313_106776151	3300009840	Serpentine Soil	MPSRNIGKKRDTGRDPEIPAELAKREAQDRAKGETGRGRAQSPIDAQHVDAPKRQDNARGHRQRRGS*
Ga0126308_110624042	3300010040	Serpentine Soil	MQMPSRNVGKKRDTGRDMEIPAELSKREAQDRAKGAAGKGRAQSPVDAQHVNAPKRQDNARGHRQRRGG*
Ga0126312_107086462	3300010041	Serpentine Soil	MPSRNIGKKRDTGRDAEIPAELATREAQDRGKGAAGRGRAQSPVDAQHVDAPKRQDNARGHRRQKRG*
Ga0126311_101142782	3300010045	Serpentine Soil	MQEMQMPSRNVGKKRDTGRDAEIPAELSKREAQDRAKGPTGKGRAQSPIDAQHVDAPKRQDNARGHRQRPRG*
Ga0126306_100610423	3300010166	Serpentine Soil	MPSRNIGKKRDTGRDAEIPAELSEREAQDRAKSETGTGRARSPVDAQHVDAPKRQDNARGHRQRRGG*
Ga0126306_105810291	3300010166	Serpentine Soil	MPSRNIGKKRDTGRDAEIPAELPRREAQDRSKPTSRRGGAESPVDAQHVDAPKRQDNARGHRQQKGR*
Ga0126306_112075622	3300010166	Serpentine Soil	MPSRNIGSKRDTGRDAEIPAELSKREAQDRAKGSAGKGRAQSPVDAQHVDAPKQQDNTRGHKQRKSR*
Ga0105239_111202851	3300010375	Corn Rhizosphere	MQMPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVEAPRKRDNKRGHHEENHD*
Ga0134124_109888232	3300010397	Terrestrial Soil	MRNGLRRYRMSSRYIGKKRDTGRDAEVPAELARREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREENHG*
Ga0126317_107108951	3300011332	Soil	HMPSRNIGKKRDTGRDAEIPAELAKREAQDRSKGSTGRGRAQSPIDAQHVDAPKRQDNARGHRQRRGS*
Ga0150985_1015767881	3300012212	Avena Fatua Rhizosphere	MPSRNIGKKRDTGRDAEIPAELAQREAQDRSKGAAGGGQAQSPIDAQHVDAPKHQDNARGHKQQKR
Ga0150985_1064393061	3300012212	Avena Fatua Rhizosphere	RLRMRLDEEAMPSRNIGKKRDTGRDEEIPAELAQREAQDRAKGGERGQARSPIDSQHVDAPRKRDNARGHREENRG*
Ga0150985_1098251031	3300012212	Avena Fatua Rhizosphere	MPSRNIGKKRDTGRDAEVPAELSKREAQDRSKGAPGRGRAQSPIDAQHVDAPKRQDNARGHKQQKER*
Ga0150985_1206452261	3300012212	Avena Fatua Rhizosphere	HAMKSQEESMASRNIGKKRDTGRDTEVPAELAQREAQGRPKGEGRGQARSPIDAQHVDAPRKRDNARGHHEENRGENHD*
Ga0150984_1112297882	3300012469	Avena Fatua Rhizosphere	DMPSRNIGSKRDTGRDSEIPAELSKREAQDRSKGSAARGGAQSPIDSQHVDAPKQQDNARGHKQRKNR*
Ga0150984_1209042461	3300012469	Avena Fatua Rhizosphere	MKSQEESMASRNIGKKRDTGRDTEVPAELAQREAQGRPKGEGRGQARSPIDAQHVDAPRKRDNARGHHEENRGENHD*
Ga0164300_108348552	3300012951	Soil	MNPGDAGMRMPNGLRRYRMPSRYIGKKRDTGRDAEVPAELARREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREGNHG*
Ga0164303_105438252	3300012957	Soil	VRGCGGAGMRNGLRRYRMPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0164304_106863881	3300012986	Soil	MPSRNIGKKRDTGRDAEVPAELAEREAQSRAKGESRGQARSPIDAQHVDAPRKRDNARGHHEENHD*
Ga0164306_115981692	3300012988	Soil	MRNGLRRYRMPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0164305_100627663	3300012989	Soil	YRMPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG*
Ga0157371_112345661	3300013102	Corn Rhizosphere	MSSRYIGKKRDTGRDAEVPAELSRREAQDRAKGERGQSRSPIDAQHVEAPKRRDNKRGHREGNHG*
Ga0157370_120325681	3300013104	Corn Rhizosphere	MQMPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVDAPKKRDNKRGHHEENHD*
Ga0157374_104829742	3300013296	Miscanthus Rhizosphere	MRVRNGLRRYRMSSRYIGKKRDTGRDAEVPAELSRREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREENHG*
Ga0157372_105822962	3300013307	Corn Rhizosphere	MPSRNIGKKRDTGRDAEVPAELAEREAQDRAKGDGARSPIDAQHVDAPRKRDNARGHHEENRD*
Ga0157376_126927181	3300014969	Miscanthus Rhizosphere	MRNGLRRYRMSSRYIGKKSDTGRDAEVPAELARREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREGNHG*
Ga0132258_117328943	3300015371	Arabidopsis Rhizosphere	MEEERMPSRNIGKKRDTGRDDEIPAELAQREAQDRAKGERGQMRSPIDSQHVDAPRKRDNARGHHEENHD*
Ga0132255_1012423431	3300015374	Arabidopsis Rhizosphere	MRNGLRRYRMPSRYIGKKRDTGRDGEVPAELSRREAQDRAKGERGQARSPIDSQHVEAPKRQDNARGHREGNRG*
Ga0182009_101735702	3300021445	Soil	MPSRNIGKKRDTGTDTEVPAELAQREAQDRAKGERGQMRSPIDSQHVDAPRKRDNARGHHEENRD
Ga0182009_105460051	3300021445	Soil	MPSRNIGKKRDTGSDAEVPAELAEREAQDRAKGGSRGQARSPVDAEHVDAPRRRDNK
Ga0222622_100527333	3300022756	Groundwater Sediment	MPSRNIGKKRDTGRDAEIPAELAKREAQDRSKGEAGRGRAQSPIDAQHVDAPKRQDNARGHRQQRRGS
Ga0222622_113248741	3300022756	Groundwater Sediment	MPSRYIGKKRDTGRDAEVPAELSQREAQDRAKGERGQARSPVDAQHVEAPKRRDNARGHREGNRG
Ga0207656_105811091	3300025321	Corn Rhizosphere	MPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVEAPRKRD
Ga0207682_100559312	3300025893	Miscanthus Rhizosphere	MASRNIGKKRDTGRDAQIPAELAKREAQDRSKGPTGRGRAQSPIDAQHVDAPKRQDNARGHRQRRGS
Ga0207645_100442282	3300025907	Miscanthus Rhizosphere	MSSRYIGKKRDTGRDAEVPAELARREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREGNHG
Ga0207705_100806492	3300025909	Corn Rhizosphere	MPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVEAPRKRDNKRGHHEENHD
Ga0207705_108284462	3300025909	Corn Rhizosphere	MPSRNIGKKRDTGTDAEVPAELAQREAQDRAKGERGQMRSPIDSQHVDAPRKRDNARGHHEENRGENVD
Ga0207663_114150532	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MPSRYIGNKRNTGRDAEVPAELSHREAQDRAKGERGQARSPVDAQHVEAPKRRDNARGHREGNRG
Ga0207649_107078351	3300025920	Corn Rhizosphere	MPSRNIGKKRDTGRDAEVPAELAEREAQDRAKGDGARSPIDAQHVDAPRKRDNARGHHEENRD
Ga0207701_111527292	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRNGLRRYRMPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG
Ga0207644_102144092	3300025931	Switchgrass Rhizosphere	MNPGDAGKSDARWRVRNGLRRYRMSSRYIGKKRDTGRDAEVPAELSRREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREENHG
Ga0207690_108019191	3300025932	Corn Rhizosphere	MPSRNIGKKRDTGRDAEVPAELGQREAQDRAKGEDRGQARSPIDAQHVEAPRKRDNKRGH
Ga0207706_111040662	3300025933	Corn Rhizosphere	GKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG
Ga0207704_100398972	3300025938	Miscanthus Rhizosphere	MPSRYIGKKRDMGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG
Ga0207691_101245672	3300025940	Miscanthus Rhizosphere	MPSRYIGKKRDTGRDGEVPAELSRREAQSRAKGERGQARSPVDAQHVEAPKRQDNRRGHREGNHG
Ga0207679_109660062	3300025945	Corn Rhizosphere	DTGRDGEVPAELSRREAQDRAKGERGQARSPIDSQHVEAPKRQDNARGHREGNRG
Ga0207679_110010181	3300025945	Corn Rhizosphere	MPSRYIGKKRDTGRDGEVPAELSRREAQDRAKGERGQARSPIDSQHVEAPKRQDN
Ga0207641_105796302	3300026088	Switchgrass Rhizosphere	MPSRYIGKKRDTGRDGEVPAELSRREAQDRAKGERGQARSPIDSQHVEAPKRQDNARGHREGNRG
Ga0209818_10871132	3300027637	Agricultural Soil	MPSRNIGKKRDTGRDAEVPAELAKREAQDRPKPAGGRGGAESPVDAQHVDAPKRQDNARGHRQQKRR
Ga0307303_101128751	3300028713	Soil	MPSRNIGKKRDTGRDAEVPAELSKREGQDRAKGVAGTGRARSPVDAQHVDAPKRQDNARGHRQKRVS
Ga0307408_1008686882	3300031548	Rhizosphere	MPSRNIGKKRDTGRDAEVPAELATREAQDRPKPSRKSGGAESPVDAQHVDAPKRQDNARGHREQKRR
Ga0307408_1011865361	3300031548	Rhizosphere	MPSRNIGKKRDTGRDAEVPAELATREAQDRPKPSPKRGGAESPVDSQHVDAPKRQDNARGHREQKRR
Ga0307405_106518272	3300031731	Rhizosphere	MPSRNIGKKRDTGRDAEVPAELAQREAQDRAKGATGRGRAESPVDAQHVDAPKRQDNARGHRQQKHR
Ga0308175_1003092602	3300031938	Soil	MPSRNIGGKRDTGRDGEVPAELSKREAQDRSKSATGNGQARSPVDAQHVDAPKRQDNGRGHKQQKRS
Ga0308175_1008137792	3300031938	Soil	MPSRNIGKKRDTGRDAEIPAELAQREAQDRAKGAAGRGRAQSPIDAKHVDAPKQQDNARGHRQQRRG
Ga0308175_1009977942	3300031938	Soil	MPSRNIGKKRDTGRDTEVPAELAQREAQDRAKGEDRGQARSPIDAQHVDAPKKRDNKRGHHEENHD
Ga0308175_1010955742	3300031938	Soil	MPSRNIGPKRDTGRDAEIPAELATREAQDRAKGATGRGRARSPVDAQHVDAPKQQDNTRGHKQRKSR
Ga0308175_1011414082	3300031938	Soil	MSSRYIGKKRDTGRDAEVPAELSQREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREGNHG
Ga0308175_1014850491	3300031938	Soil	MPSRNIGKKRDTGTDAEVPAELAQREAQDRAKGEDRGQMRSPIDSQHVDAPRKRDNARGHHEENRGENVD
Ga0308174_100881492	3300031939	Soil	MSSRYIGKKRDTGRDAEVPAELSQREAQDRAKGERGQARSPIDAQHVEAPKRRDNKR
Ga0308174_108506411	3300031939	Soil	MPSRNIGKKRDTGRDTEVPAELAQREAQDRAKGATGRGRAQSPIDAQHVDAPKHQDNARGHRQQRRGARGA
Ga0308174_111597162	3300031939	Soil	MPSRNIGKKRDTGRDAEVPAELAEREAQDRAKWDGARSPIDAQHVDAPRKRDNARGHHEENHD
Ga0308176_106385751	3300031996	Soil	MSSRYIGKKRDTGRDGEVPAELSRREAQDRAKGERGQARSPIDAQHVEAPKRQDNKRGHREGNHG
Ga0308176_112627302	3300031996	Soil	MPSRNIGKKRDTGRDTEVPAELANREAQDRAKGGDRGQARSPIDAQHVDAPKKRDNARGHHEENRD
Ga0308176_126690891	3300031996	Soil	MADRNGRRDDNGPAEGAQREAQDRESNGRAQAQSPVDKTHVDAPKQQDNARGHRQQRRG
Ga0307416_1003967383	3300032002	Rhizosphere	KKRDTGRDAEVPAELAQREAQDRAKGATGRGRAESPVDAQHVDAPKRQDNARGHRQQKHR
Ga0308173_100101433	3300032074	Soil	MSSRYIGKKRDTGRDAEVPAELSQREAQDRAKGERGQARSPIDAQHVEAPKRRDNKRGHREGNRG
Ga0372946_0272841_549_755	3300034384	Soil	MASRNIGKKRDTGRDEEIPAELERREAQDRSKPDAGSGGARSPVDAMHVDAPKQQDNARGHRQGKQRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096765

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences