Metagenome / Metatranscriptome Family F096764

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096764
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	103 residues
Representative Sequence	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADQRHRELLHEFEAAHRCLPLWNDPQRLPT
Number of Associated Samples	73
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	31.73 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.077 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil (21.154 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (32.692 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.03% β-sheet: 18.18% Coil/Unstructured: 53.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.226.1.1: GIY-YIG endonuclease	d1mk0a_	1mk0	0.58539
b.43.2.0: automated matches	d3a9sa2	3a9s	0.57111
d.309.1.1: AMMECR1-like	d1vaja1	1vaj	0.5521
d.142.1.2: BC ATP-binding domain-like	d1t36a5	1t36	0.54306
d.153.1.1: Class II glutamine amidotransferases	d1gdoa_	1gdo	0.52934

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01594	AI-2E_transport	4.81
PF00753	Lactamase_B	3.85
PF00072	Response_reg	2.88
PF07963	N_methyl	2.88
PF04143	Sulf_transp	2.88
PF00211	Guanylate_cyc	1.92
PF00690	Cation_ATPase_N	1.92
PF02668	TauD	1.92
PF01522	Polysacc_deac_1	0.96
PF11604	CusF_Ec	0.96
PF13185	GAF_2	0.96
PF00923	TAL_FSA	0.96
PF04828	GFA	0.96
PF00005	ABC_tran	0.96
PF02518	HATPase_c	0.96
PF00749	tRNA-synt_1c	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	4.81
COG2391	Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains	General function prediction only [R]	2.88
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	1.92
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.92
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.92
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	0.96
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.96
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	82.69 %
Unclassified	root	N/A	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	4.81 %
Unclassified	root	N/A	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.81 %
Unclassified	root	N/A	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003993\|Ga0055468_10156147	Not Available	682	Open in IMG/M
3300004114\|Ga0062593_100366211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1269	Open in IMG/M
3300004156\|Ga0062589_102676461	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300004463\|Ga0063356_100762048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1343	Open in IMG/M
3300004463\|Ga0063356_100763485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1342	Open in IMG/M
3300004463\|Ga0063356_102462468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	797	Open in IMG/M
3300004480\|Ga0062592_100415337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1077	Open in IMG/M
3300004643\|Ga0062591_101014075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	791	Open in IMG/M
3300005336\|Ga0070680_100029100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4436	Open in IMG/M
3300005345\|Ga0070692_10014140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3738	Open in IMG/M
3300005440\|Ga0070705_100626273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	836	Open in IMG/M
3300005441\|Ga0070700_101769268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	532	Open in IMG/M
3300005545\|Ga0070695_100698893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	805	Open in IMG/M
3300005546\|Ga0070696_100341956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1156	Open in IMG/M
3300005713\|Ga0066905_100717189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	860	Open in IMG/M
3300005718\|Ga0068866_10610475	All Organisms → cellular organisms → Bacteria → Proteobacteria	738	Open in IMG/M
3300005718\|Ga0068866_11118249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	565	Open in IMG/M
3300005844\|Ga0068862_102087572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	578	Open in IMG/M
3300006876\|Ga0079217_10048902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1687	Open in IMG/M
3300006876\|Ga0079217_10378395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	825	Open in IMG/M
3300006876\|Ga0079217_10934450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	624	Open in IMG/M
3300006876\|Ga0079217_11721009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	505	Open in IMG/M
3300006894\|Ga0079215_10049391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1623	Open in IMG/M
3300006894\|Ga0079215_10078530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1384	Open in IMG/M
3300006894\|Ga0079215_10276449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	910	Open in IMG/M
3300006894\|Ga0079215_10553207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	735	Open in IMG/M
3300006894\|Ga0079215_11665970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	509	Open in IMG/M
3300006918\|Ga0079216_10141256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1239	Open in IMG/M
3300007004\|Ga0079218_10086748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2100	Open in IMG/M
3300007004\|Ga0079218_10176604	All Organisms → cellular organisms → Bacteria → Proteobacteria	1597	Open in IMG/M
3300007004\|Ga0079218_10290817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1320	Open in IMG/M
3300009147\|Ga0114129_12631336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	600	Open in IMG/M
3300009148\|Ga0105243_10345356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1365	Open in IMG/M
3300009789\|Ga0126307_10843023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	740	Open in IMG/M
3300010399\|Ga0134127_11635282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	719	Open in IMG/M
3300011409\|Ga0137323_1015013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1758	Open in IMG/M
3300011412\|Ga0137424_1065604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300011429\|Ga0137455_1266658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	504	Open in IMG/M
3300011435\|Ga0137426_1116709	All Organisms → cellular organisms → Bacteria → Proteobacteria	764	Open in IMG/M
3300011437\|Ga0137429_1018775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1968	Open in IMG/M
3300011439\|Ga0137432_1008280	All Organisms → cellular organisms → Bacteria → Proteobacteria	2895	Open in IMG/M
3300011440\|Ga0137433_1134305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	790	Open in IMG/M
3300011445\|Ga0137427_10170443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	900	Open in IMG/M
3300011445\|Ga0137427_10231535	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300012232\|Ga0137435_1050288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1224	Open in IMG/M
3300014878\|Ga0180065_1093456	Not Available	682	Open in IMG/M
3300018422\|Ga0190265_10016064	All Organisms → cellular organisms → Bacteria → Proteobacteria	5823	Open in IMG/M
3300018422\|Ga0190265_10222046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1918	Open in IMG/M
3300018422\|Ga0190265_10492541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1337	Open in IMG/M
3300018429\|Ga0190272_10047641	All Organisms → cellular organisms → Bacteria → Proteobacteria	2457	Open in IMG/M
3300018429\|Ga0190272_11318378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	719	Open in IMG/M
3300018432\|Ga0190275_10067118	All Organisms → cellular organisms → Bacteria → Proteobacteria	3063	Open in IMG/M
3300018465\|Ga0190269_11406294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	567	Open in IMG/M
3300018466\|Ga0190268_10956676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	675	Open in IMG/M
3300018469\|Ga0190270_10814797	All Organisms → cellular organisms → Bacteria → Proteobacteria	942	Open in IMG/M
3300018469\|Ga0190270_11207936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	795	Open in IMG/M
3300018469\|Ga0190270_11394299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	747	Open in IMG/M
3300018476\|Ga0190274_10212511	All Organisms → cellular organisms → Bacteria → Proteobacteria	1714	Open in IMG/M
3300019238\|Ga0180112_1230059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	551	Open in IMG/M
3300019259\|Ga0184646_1145684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	510	Open in IMG/M
3300019360\|Ga0187894_10083260	All Organisms → cellular organisms → Bacteria → Proteobacteria	1752	Open in IMG/M
3300019361\|Ga0173482_10424058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	625	Open in IMG/M
3300019362\|Ga0173479_10331100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	707	Open in IMG/M
3300019487\|Ga0187893_10006820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	19200	Open in IMG/M
3300020063\|Ga0180118_1068746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	928	Open in IMG/M
3300020215\|Ga0196963_10035063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2112	Open in IMG/M
3300021066\|Ga0196980_1041908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	751	Open in IMG/M
3300025167\|Ga0209642_10094093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1731	Open in IMG/M
3300025917\|Ga0207660_10277892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1328	Open in IMG/M
3300025917\|Ga0207660_10806369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	766	Open in IMG/M
3300025936\|Ga0207670_10537986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	953	Open in IMG/M
3300025960\|Ga0207651_10960415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	763	Open in IMG/M
3300025981\|Ga0207640_10640806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	904	Open in IMG/M
3300027378\|Ga0209981_1008675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1381	Open in IMG/M
3300027637\|Ga0209818_1180892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	607	Open in IMG/M
3300027639\|Ga0209387_1151055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	608	Open in IMG/M
3300027691\|Ga0209485_1350954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	500	Open in IMG/M
3300027886\|Ga0209486_10046283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2161	Open in IMG/M
3300027886\|Ga0209486_10106340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1497	Open in IMG/M
3300027886\|Ga0209486_10189537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1157	Open in IMG/M
3300027886\|Ga0209486_10419943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	815	Open in IMG/M
3300027886\|Ga0209486_10655276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	672	Open in IMG/M
3300027886\|Ga0209486_11212813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	518	Open in IMG/M
3300028889\|Ga0247827_11017005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	564	Open in IMG/M
3300031226\|Ga0307497_10001644	All Organisms → cellular organisms → Bacteria → Proteobacteria	5611	Open in IMG/M
3300031548\|Ga0307408_100344854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1262	Open in IMG/M
3300031548\|Ga0307408_100430333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1140	Open in IMG/M
3300031548\|Ga0307408_100818700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	846	Open in IMG/M
3300031548\|Ga0307408_101253343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	693	Open in IMG/M
3300031548\|Ga0307408_101821382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	582	Open in IMG/M
3300031731\|Ga0307405_10528234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	951	Open in IMG/M
3300031740\|Ga0307468_101517778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	622	Open in IMG/M
3300032002\|Ga0307416_100969919	All Organisms → cellular organisms → Bacteria → Proteobacteria	952	Open in IMG/M
3300032005\|Ga0307411_11058394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	729	Open in IMG/M
3300032126\|Ga0307415_100869065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	829	Open in IMG/M
3300032144\|Ga0315910_10416485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1030	Open in IMG/M
3300032144\|Ga0315910_11493943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	527	Open in IMG/M
3300032157\|Ga0315912_10071506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2725	Open in IMG/M
3300032157\|Ga0315912_10217144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1501	Open in IMG/M
3300032157\|Ga0315912_11322611	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M
3300032205\|Ga0307472_100900132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	819	Open in IMG/M
3300033407\|Ga0214472_11201577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	661	Open in IMG/M
3300033813\|Ga0364928_0090668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	712	Open in IMG/M
3300034164\|Ga0364940_0165628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	640	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.77%
Host-Associated	Host-Associated	19.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.35%
Plants	Host-Associated → Plants	19.23%
Aquatic	Environmental → Aquatic	14.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.54%
Sediment	Environmental → Aquatic → Sediment	10.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.69%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Cave	Environmental → Terrestrial → Cave	1.92%
Floodplain	Environmental → Terrestrial → Floodplain	1.92%
Marine	Environmental → Aquatic → Marine	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.58%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.88%
Sand	Environmental → Terrestrial → Soil → Sand	1.92%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.92%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.92%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	21.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.23%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	10.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.92%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	1.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021066	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_10-13C	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055468_101561472	3300003993	Natural And Restored Wetlands	MSIKFQSLPFTPSLIEAAPDTLGVFALWQNGGVIYLGKASAGSATIRKALGEQFNARKLNNCGAMRCSWEVADDPDLRYSELMREFEAAHH
Ga0062593_1003662113	3300004114	Soil	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQFEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCLPLWNDPQRLPT*
Ga0062589_1026764612	3300004156	Soil	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQFEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCL
Ga0063356_1007620481	3300004463	Arabidopsis Thaliana Rhizosphere	PGVFALWQNGGVIYLGKASAGGATIRKALSEQFQGRRWNGTPEELRGTRCSWEVADDADKRHSELLHQFEAAHRCLPLWNDPQRLPT*
Ga0063356_1007634854	3300004463	Arabidopsis Thaliana Rhizosphere	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVEDADRRHRELLHEFEAAHRCLPLWNDPQRLPT*
Ga0063356_1024624681	3300004463	Arabidopsis Thaliana Rhizosphere	MSIKFQSLPFTAPLIEAAPDTTGVFALWQDGGVIYLGKASANGATIRKALGAQFEARRLGGLAATRCSWEVVEDADRRHDELLQEFEAAHHCLPLWNDPQRLPT*
Ga0062592_1004153371	3300004480	Soil	MSIKFRSLPFTASLIEAAPDTTGVFALWQDGGVIYLGKASVGDATIRKALSDEFNARRLNGLVVTRCSWEVVDDADKRHRELLHEFEAAHRCLPLWNDPQRLPT*
Ga0062591_1010140753	3300004643	Soil	FMSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQFEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCLPLWNDPQRLPT*
Ga0070680_10002910012	3300005336	Corn Rhizosphere	MSMKFQSLPFTESLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGAGKAMRVSWEVVDDADRRHTELMREFESAHHCAPLWNDPQRLPI*
Ga0070692_100141407	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSMKFQSLPFTESLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGAGKAMRVSWEVADDADRRHTELMREFESAHHCAPLWNDPQRLPI*
Ga0070705_1006262731	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQLEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCLPLWNDPQRLPT*
Ga0070700_1017692681	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQLEGRKWNDLVVTRCSWEVVEDADRRHSELLHEFEAAHRCLPLWNDPQRLPT*
Ga0070695_1006988931	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	RTMSIKFRSLPFTASLIEAAPDTTGVFALWQDGGVIYLGKASVGDATIRKALSDEFNARRLNGLVVTRCSWEVVDDADKRHRELLHEFEAAHRCLPLWNDPQRLPT*
Ga0070696_1003419563	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQFEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCLPLWNDPQRL
Ga0066905_1007171893	3300005713	Tropical Forest Soil	MSIRSQSLPFTATLIEAAPNTTGVFALWQNGGVIYLGKASAGSATIRKALAEQLNASQWNGLVALRCSWEVVDDPDQRHSELLNEFEAAHHCLPLWNDPQRLPT*
Ga0068866_106104751	3300005718	Miscanthus Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQFEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCLPLWND
Ga0068866_111182492	3300005718	Miscanthus Rhizosphere	PMSMKFQSLPFTESLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGAGKAMRVSWEVADDADRRHTELMREFESAHHCAPLWNDPQRLPI*
Ga0068862_1020875721	3300005844	Switchgrass Rhizosphere	FTASLIEAAPDTTGVFALWQDGGVIYLGKASVGDATIRKALSDEFNARRLNGLVVTRCSWEVVDDADKRHRELLHEFEAAHRCLPLWNDPQRLPT*
Ga0079217_100489022	3300006876	Agricultural Soil	MSIKIRSLPFTESLIAAAPDATGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADRRHRELLQEFESAHRCLPLWNDPQRLPT*
Ga0079217_103783952	3300006876	Agricultural Soil	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWSESMVTRCSWEVVDDADRRHRELLQEFEAAHRCLPLWNDPQRLPT*
Ga0079217_109344502	3300006876	Agricultural Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWSDPLTTRCSWEIAEDADKRHRELLHEFEAAHRCLPLWNDPQRLPT*
Ga0079217_117210091	3300006876	Agricultural Soil	DTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADRRHRELLQEFEAAHRCLPLWNDPQRLPT*
Ga0079215_100493912	3300006894	Agricultural Soil	MSINFQSLPFIPSLVAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGADKAMRVSWEVVDDADRRHTELMREFENAHHCAPLWNDPQRLPT*
Ga0079215_100785303	3300006894	Agricultural Soil	MSIKFRSLPFTASLIEAAPNTTGVFALWQDGGVIYLGKASVGDATIRNALSGQLQARLFNQTSSGVRVSWEIADDADKRHRELLHEFEAAHRCLPLWNDPQRLPT*
Ga0079215_102764492	3300006894	Agricultural Soil	MSIKFQSLPFTPPLIAAAPDTHGVFALWQNGGVIYLGKASAGAATIRKALAEQFNARQWGGTASMRCSWEVSDDPDQRHSELLHEFETAHHCVPLWNDPQRLPT*
Ga0079215_105532072	3300006894	Agricultural Soil	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADRRHRELLLEFEAAHRCLPLWNDPQRLPT*
Ga0079215_116659702	3300006894	Agricultural Soil	MSIRFQSLPFTEALIQAAPNTTGVFALWQNGGVIYLGKASAGAATIRNALLAQLQARQLTEASLMRCSWEVADNPDQRHRELLHDFEAAHHCLPLWNDPQRLPT*
Ga0079216_101412563	3300006918	Agricultural Soil	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADQRHRELLQEFEAAHRCLPLWNDPQRLPT*
Ga0079218_100867484	3300007004	Agricultural Soil	MSIKFQSLPFIPSLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGADKAMRVSWEVVDDADRRHTELMREFENAHHCAPLWNDPQRLPT*
Ga0079218_101766042	3300007004	Agricultural Soil	MSIKFRSLPFTASLVEAAPNTTGVFALWQDGGVIYLGKASVGDATIRNALSGQLHARLFNQTSSGVRVSWEIADDADKRHRELLHEFEAAHRCLPLWNDPQRLPT*
Ga0079218_102908172	3300007004	Agricultural Soil	MSIKFQSLPFTAPLIEAAPDTTGVFALWQDGGVIYLGKASVGSATIRAALSAQLEARQSNHITCKALRVSWEVAENADRRHDELLQEFEAAHHCLPIWNDPQRLPT*
Ga0114129_126313362	3300009147	Populus Rhizosphere	MSMKFQSLPFTESLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARRYSGAGKAMRVSWEVVDDADRRHTELMREFESAHHCAPLWNDPQRLPI*
Ga0105243_103453562	3300009148	Miscanthus Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGGQLEGRKWNDLVITRCSWEVVEDADKRHSELLHEFEAAHHCLPLWNDPQRLPT*
Ga0126307_108430231	3300009789	Serpentine Soil	MSIKFRSLPFTASLIEAAPNTTGVFALWQDGGVIYLGKASVGDATIRNALSGQLQARLFNETSSGVRVSWEIADDADKRHHELLQEFEAAHRCLPLWNDPQRLPT*
Ga0134127_116352822	3300010399	Terrestrial Soil	MSIKFRSLPFTASLIEAAPDTTGVFALWQDGGVIYLGKASVGDATIRKALSDEFNARRLNGLVVTRCSWEVVDDADKRHRELLHEFEAAHRCLPLWNDPQRLPTN*
Ga0137323_10150132	3300011409	Soil	MGAGNPGEIAGEIQMSIKFQSLPFTEPLIEAAPDTTGVFALWQDGGVIYLGKASAGAATIRKALGEQFQGRRWNNLAGTRCSWEIAEDADKRYSELLREVEAAHHCAPLWNDPQRLPT*
Ga0137424_10656041	3300011412	Soil	MSIRTASLPRSFPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWSDPLTTRCSWEIAEDADKRHRELLHEFESAHRCLPLWNDPQRLPT*
Ga0137455_12666581	3300011429	Soil	MGTAVAGWRNEMSIKFQSLPFTESLIEAAPDTMGVFALWQNGGVIYLGKASAGAATIRKALGEQFHGRRWNATREEQRGTRCSWEIAEDADKRYDELLREFEVAHHCAPLWNDPQRLPM*
Ga0137426_11167092	3300011435	Soil	MLSIRFQSLPFTPSLIEAAPDTVGVFALWQNGGVIYLGKASQGSATIRNALSGQFTARKLNAGGVPTSIRCSWEVADDPDRRHSELLREFEAA
Ga0137429_10187754	3300011437	Soil	MPIQFQSLPFTPSLIEAAPDTVGVFALWQNGGVIYLGKASAGSATIRKALSEQLSARRLNNGGSNPASLRCSWEVADDPDLRYSELLREFEAAHHCVPLWNDPQRLPT*
Ga0137432_10082801	3300011439	Soil	TGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGAGNAMRVSWEVVDDADRRHTELMREFENAHHCAPLWTDPQRLPTSLTSRRSSAA*
Ga0137433_11343051	3300011440	Soil	MSMNFQSLPFTPSLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGAGNAMRVSWEVVDDADRRHTELMREFENAHHCAPLWNDPQRLPT*
Ga0137427_101704433	3300011445	Soil	MGTTVAGWRNEMSIKFQSLPFTESLIEAAPDTMGVFALWQNGGVIYLGKASAGAATIRKALGEQFHGRRWNATREEQRGTRCSWEIAEDADKRYDELLREFEVAHHCAPLWNDPQRLPM*
Ga0137427_102315352	3300011445	Soil	MPIKFQSLPFTEPLIEAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGEQFQGRRWNATQEELRGTRCSWEIAEDADKRHSELLREFEVAHHCAPL
Ga0137435_10502882	3300012232	Soil	MSIKFQSLPFTESLIEAAPDTMGVFALWQNGGVIYLGKASAGAATIRKALGEQFHGRRWNATREEQRGTRCSWEIAEDADKRYDELLREFEVAHHCAPLWNDPQRLPM*
Ga0180065_10934561	3300014878	Soil	MPIKFQSLPFTEPLIEAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGEQFQGRRWNATQEELRGTRCSWEIAEDADKRHSELLREFEV
Ga0190265_100160644	3300018422	Soil	MSIKYRSLPFTASLIEAAPNTTGVFALWQDGGVIYLGKASVGDATIRNALSGQLQARLSNETSSGVRVSWEVADDADKRHSELLHEFEAAHRCLPLWNDPQRLPT
Ga0190265_102220464	3300018422	Soil	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADQRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0190265_104925414	3300018422	Soil	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNERVTTRCSWEVVEDADQRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0190272_100476413	3300018429	Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRTALGEQFEGRKWNEMVVTRCSWEIVEDADQRHHELLHEFEAAHRCLPLWNDPQRLPT
Ga0190272_113183782	3300018429	Soil	MSIKIRSLPFTESLIEAAPDTIGVFALWQNGGVIYLGKASAGAATIRKALGEQFQGRKWSETPAEMRVTRCSWEIAEDADQRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0190275_100671182	3300018432	Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFEGRKWNEMVVTRCSWEIVEDADQRHHELLHEFEAAHRCLPLWNDPQRLPT
Ga0190269_114062941	3300018465	Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWNDPMLTRCSWEIAEDADQRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0190268_109566762	3300018466	Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALAEQFEGRKWNDRVVTRCSWEIVEDADQRHHELLHEFEAAHRCLPLWNDPQRLPT
Ga0190270_108147972	3300018469	Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWSDPLTTRCSWEIAEDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0190270_112079362	3300018469	Soil	GTVMSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWNDPMLTRCSWEIAEDADQRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0190270_113942992	3300018469	Soil	MSISTVSLPRSFPLIESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRNALSAQFEARRLNELVVTRCSWEVVEDADGRHRELLHEFESAHHCLPLWNDPQRLPT
Ga0190274_102125113	3300018476	Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALSAQLDARKWNDTSAEMRVTRCSWEVVDDADKRHTELLHEFEAAHHCLPLWNDPQRLPT
Ga0180112_12300593	3300019238	Groundwater Sediment	AGRNPMPIKFQSLPFTEPLIEAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGEQFHGRRWNATREEQRGTRCSWEIAEDADKRYDELLREFEVAHHCAPLWNDPQRLPM
Ga0184646_11456842	3300019259	Groundwater Sediment	EMSIKFQSLPFTESLIEAAPDTTGVFALWQNGGVIYLGKASAGAATIRRALSEQFKARQWNSVAAMRCSWEVADDPDQRHTELMHEFETAHHCMPLWNDPQRLPT
Ga0187894_100832605	3300019360	Microbial Mat On Rocks	MSLKFRSLPFTESLVEAAPDTTGVFALWQDGGVIYLGKASSGAATIRTALNAQLQARKSNLIAIRELRVSWEVAEDPDRRHSELMHEFEAAHRCLPLWNDPQRLPT
Ga0173482_104240581	3300019361	Soil	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQFEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCLPLWNDPQRLPT
Ga0173479_103311001	3300019362	Soil	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASVGDATIRKALSDEFTARRLNGLVVTRCSWEVVVDADKRHRELLHEFEAAHRCLPLWNDPQRLP
Ga0187893_1000682027	3300019487	Microbial Mat On Rocks	MPIKFQSLPFTESLVDAAPNTTGVFALWQDGGVIYLGKASAGAATIRTALSAQLHARRSNLITINAMRVSWEVVDDPDRRHSELLHEFEAAHRCLPLWNDPQRLPT
Ga0180118_10687462	3300020063	Groundwater Sediment	MPIQFQSLPFTPSLIEAAPDTVGVFALWQNGGVIYLGKASAGSATIRKALSEQLSARRLNNGGSNPASLRCSWEVADDPDLRYSELLREFEAAHHCVPLWNDPQRLPT
Ga0196963_100350633	3300020215	Soil	MSIRFQSLPFTEALIQAAPDTTGVFALWQNGGVIYLGKASAGAATIRNALLAQLEARRLGERSAIRCNWEVAEDADRRHRELLHDFEAAHHCLPLWNDPQRLPT
Ga0196980_10419081	3300021066	Soil	MSIRFQSLPFTEALIQAAPDTTGVFALWQNGGVIYLGKASAGAATIRNALSAQLQARKLAEGGLMRCSWEVSDDADQRHRQLLLEFETAHHCLPLWNDPQ
Ga0209642_100940933	3300025167	Soil	MSIKILGPRSFPFNESLISAAPDTTGVFALWQNGGVIYLGKASSGAATIRKALGAQLEGRKWNERVVTRCSWEVVDDADRRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0207660_102778922	3300025917	Corn Rhizosphere	MSMKFQSLPFTESLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGAGKAMRVSWEVADDADRRHTELMREFESAHHCAPLWNDPQRLPI
Ga0207660_108063692	3300025917	Corn Rhizosphere	MSIKFRSLPFTASLIEAAPDTTGVFALWQDGGVIYLGKASVGDATIRKALSDEFNARRLNGLVVTRCSWEVVDDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0207670_105379863	3300025936	Switchgrass Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQLEGRKWNDLVVTRCSWEVVEDADKRHSELLHEFEAAHRCLPLWNDPQRLPT
Ga0207651_109604152	3300025960	Switchgrass Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQLEGRKWNDLVVTRCSWEVVEDADRRHSELLHEFEAAHRCLPLWNDPQRLPT
Ga0207640_106408063	3300025981	Corn Rhizosphere	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGEATIRKALGQQFEGRKWNDTDVLRITRVSWEVVEDADKRHSELLHEFEAAHRCLPLWNDPQRLPT
Ga0209981_10086752	3300027378	Arabidopsis Thaliana Rhizosphere	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVEDADRRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0209818_11808922	3300027637	Agricultural Soil	MSIKIRSLPFTESLIAAAPDATGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADRRHRELLQEFESAHRCLPLWNDPQRLPT
Ga0209387_11510551	3300027639	Agricultural Soil	IPSLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGADKAMRVSWEVVDDADRRHTELMREFENAHHCAPLWNDPQRLPT
Ga0209485_13509542	3300027691	Agricultural Soil	PDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADQRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0209486_100462833	3300027886	Agricultural Soil	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWSESMVTRCSWEVVDDADRRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0209486_101063401	3300027886	Agricultural Soil	MSIKFRSLPFTASLVEAAPNTTGVFALWQDGGVIYLGKASVGDATIRNALSGQLHARLFNQTSSGVRVSWEIADDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0209486_101895371	3300027886	Agricultural Soil	SLPFIPSLIAAAPATTGVFALWQNGGVIYLGKASAGAATIRGALSAQFEARKYSGADKAMRVSWEVVDDADRRHTELMREFENAHHCAPLWNDPQRLPT
Ga0209486_104199432	3300027886	Agricultural Soil	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADQRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0209486_106552762	3300027886	Agricultural Soil	MSIKFQSLPFTAPLIEAAPDTTGVFALWQDGGVIYLGKASVGSATIRAALSAQLEARQSNHITCKALRVSWEVAENADRRHDELLQEFEAAHHCLPLWNDPQRLPT
Ga0209486_112128132	3300027886	Agricultural Soil	TTGVFALWQDGGVIYLGKASVGSATIRAALSAQLQARQSNHITCKALRVSWEVAENADRRHDELLQEFEAAHHCLPIWNDPQRLPT
Ga0247827_110170052	3300028889	Soil	PFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWSDPLTTRCSWEIAEDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0307497_100016446	3300031226	Soil	MSIKIRSFALTEALISAAPNTGGVFALWQNGGVIYLGKASAGGQTIRKALGEQFEGRKWNDLVVTRCSWEVVEDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0307408_1003448545	3300031548	Rhizosphere	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDDADRRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0307408_1004303331	3300031548	Rhizosphere	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNEKVATRCSWEVVDNADQRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0307408_1008187001	3300031548	Rhizosphere	MSIKFRSLPFTASLIEAAPNTTGVFALWQDGGVIYLGKASVGDATIRNALSGQLQARLFNETSSGVRVSWEIADDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0307408_1012533431	3300031548	Rhizosphere	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWNDPLVTRCSWEVVEDADKRHRELLHEFEAAHRCLPLWNDPQRL
Ga0307408_1018213822	3300031548	Rhizosphere	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDNADQRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0307405_105282342	3300031731	Rhizosphere	MSIRTASLPRSFPFTESLISAAPDTPGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWSDPLTTRCSWEIAEDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0307468_1015177781	3300031740	Hardwood Forest Soil	APDTTGVFALWQDGGVIYLGKASAGAATIRNALSGQFEARKWGSLVSIRCSWEVVDDADQRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0307416_1009699193	3300032002	Rhizosphere	MSIKIRSLPFTESLIAAAPDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNESVVTRCSWEVVDNADQRHRELLQEFEAAHRCLPL
Ga0307411_110583941	3300032005	Rhizosphere	PDTTGVFALWQNGGVIYLGKASAGAATIRKALGAQLEGRKWNEKVATRCSWEVVDNADQRHRELLQEFEAAHRCLPLWNDPQRLPT
Ga0307415_1008690652	3300032126	Rhizosphere	MSIRTASLPRSFPFTESLISAAPDTPGVFALWQNGGVIYLGKASVGDATIRNALSGQLQARLFNETSSGVRVSWEIADDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0315910_104164851	3300032144	Soil	SLPFTASLIEAAPDTTGVFALWQDGGVIYLGKASVGDATIRNPLSGQLQARLFNDTSSGVRVSWEIVDDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0315910_114939431	3300032144	Soil	MSIKSQSLPFTRSLVEIAPDTVGVFALWQDGGVIYLGKASHGAATIRDALGAQLAARKLNQCGTLRCSWEVADDPDRRHSQLLREFESAHRCVPLWNDPQRLPT
Ga0315912_100715063	3300032157	Soil	MSIKFRSLPFTASLIEAAPDTTGVFALWQDGGVIYLGKASVGDATIRNALSGQLQARLFNDTSSGVRVSWEIVDDADKRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0315912_102171443	3300032157	Soil	MSIKSQSLPFTRSLVEIAPDTVGVFALWQDGGVIYLGKASQGAATIRNALGAQLAARKLNQCGTLRCSWEVADDPDRRHSQLLREFESAHRCVPLWNDPQRLPT
Ga0315912_113226112	3300032157	Soil	MSIKIRSLPFTESLISAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALGEQFQGRRWSDPLTTRCSWEIAEDADKRHRELLH
Ga0307472_1009001321	3300032205	Hardwood Forest Soil	MSIKFQSLPFTKSLIEAAPDTTGVFALWQDGGVIYLGKASAGAATIRNALSGQFEARKWGSLVSIRCSWEVVDDADQRHRELLHEFEAAHRCLPLWNDPQRLPT
Ga0214472_112015771	3300033407	Soil	MSIKFQSLPFTRSLIEAAPDTTGVFALWQNGGVIYLGKASAGSATIRKALSEQFDARRWSGGEVELRAMRCSWEVVDDPDRRHSELLHEFEAAHRCVPLWNDPQRLPTGD
Ga0364928_0090668_99_419	3300033813	Sediment	MEMSMKFQSLPFTESLIEAAPDTTGVFALWQNGGVIYLGKASAGAATIRRALSEQFKARQWNGVAAMRCSWEVADDPDQRHTELMHEFETAHHCMPLWNDPQRLPT
Ga0364940_0165628_310_636	3300034164	Sediment	MEMSMKFQSLPFTESLIEAAPDTTGVFALWQNGGVIYLGKASAGSATIRRALSEQFNARKWSGHATTRCSWEVVDDPDRRHSELLHEFEVAHHCVPLWNDPQRLPTGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096764

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences