Metagenome / Metatranscriptome Family F096744

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096744
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	49 residues
Representative Sequence	RVTTHRGHTVQTFQSLELALEAAESLGPDHYVIDRHGLQIWNPQRKLLRNEE
Number of Associated Samples	74
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.73 %
% of genes near scaffold ends (potentially truncated)	78.85 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.231 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.423 % of family members)
Environment Ontology (ENVO)	Unclassified (66.346 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.75% β-sheet: 17.50% Coil/Unstructured: 68.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01243	Putative_PNPOx	3.85
PF02627	CMD	2.88
PF00873	ACR_tran	2.88
PF16518	GrlR	2.88
PF00582	Usp	1.92
PF11799	IMS_C	1.92
PF02518	HATPase_c	1.92
PF00536	SAM_1	0.96
PF02874	ATP-synt_ab_N	0.96
PF12697	Abhydrolase_6	0.96
PF02800	Gp_dh_C	0.96
PF04909	Amidohydro_2	0.96
PF01381	HTH_3	0.96
PF16983	MFS_MOT1	0.96
PF00005	ABC_tran	0.96
PF01180	DHO_dh	0.96
PF13280	WYL	0.96
PF13545	HTH_Crp_2	0.96
PF04780	DUF629	0.96
PF03781	FGE-sulfatase	0.96
PF10129	OpgC_C	0.96
PF06983	3-dmu-9_3-mt	0.96
PF00155	Aminotran_1_2	0.96
PF05235	CHAD	0.96
PF01144	CoA_trans	0.96
PF13356	Arm-DNA-bind_3	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	2.88
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	2.88
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	0.96
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.96
COG0167	Dihydroorotate dehydrogenase	Nucleotide transport and metabolism [F]	0.96
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.96
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.96
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.96
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.96
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.96
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.96
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.96
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	0.96
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.23 %
Unclassified	root	N/A	5.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.23 %
Unclassified	root	N/A	5.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.23 %
Unclassified	root	N/A	5.77 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	88.46 %
Unclassified	root	N/A	5.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	79.81 %
Unclassified	root	N/A	5.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	65.38 %
Unclassified	root	N/A	5.77 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.88 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	64.42 %
Unclassified	root	N/A	5.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	58.65 %
Unclassified	root	N/A	5.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Paracoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.77 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Paracoccus pantotrophus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus pantotrophus	0.96 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.96 %
Bradyrhizobium shewense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium shewense	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.88 %
Bradyrhizobium sp. CCBAU 15615	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 15615	1.92 %
Bradyrhizobium sp. BTAi1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1	0.96 %
Paracoccus pantotrophus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus pantotrophus	0.96 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.96 %
Bradyrhizobium shewense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium shewense	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02S7T9L	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus pantotrophus	508	Open in IMG/M
3300003369\|JGI24140J50213_10109473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	908	Open in IMG/M
3300005434\|Ga0070709_10385339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1043	Open in IMG/M
3300005610\|Ga0070763_10829488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	547	Open in IMG/M
3300005764\|Ga0066903_106977196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium shewense	586	Open in IMG/M
3300006041\|Ga0075023_100297499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	663	Open in IMG/M
3300006059\|Ga0075017_100227612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1357	Open in IMG/M
3300006904\|Ga0075424_101161557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	822	Open in IMG/M
3300009803\|Ga0105065_1036473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	651	Open in IMG/M
3300010009\|Ga0133908_103822	Not Available	1392	Open in IMG/M
3300010048\|Ga0126373_11140409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	846	Open in IMG/M
3300010048\|Ga0126373_11429902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300010049\|Ga0123356_12415613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	658	Open in IMG/M
3300012971\|Ga0126369_10451729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1334	Open in IMG/M
3300013296\|Ga0157374_12642511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	530	Open in IMG/M
3300014325\|Ga0163163_12144922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	618	Open in IMG/M
3300014491\|Ga0182014_10111236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1623	Open in IMG/M
3300014495\|Ga0182015_10144772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1618	Open in IMG/M
3300014838\|Ga0182030_10252098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2016	Open in IMG/M
3300015372\|Ga0132256_101680433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300016270\|Ga0182036_10054828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2524	Open in IMG/M
3300016270\|Ga0182036_10310226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 15615	1203	Open in IMG/M
3300016270\|Ga0182036_10734714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300016270\|Ga0182036_10819475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	759	Open in IMG/M
3300016294\|Ga0182041_10381688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1193	Open in IMG/M
3300016294\|Ga0182041_11603835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	601	Open in IMG/M
3300016319\|Ga0182033_10659152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	914	Open in IMG/M
3300016319\|Ga0182033_11167223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	689	Open in IMG/M
3300016341\|Ga0182035_10499781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1038	Open in IMG/M
3300016341\|Ga0182035_11092892	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300016341\|Ga0182035_11162683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	688	Open in IMG/M
3300016357\|Ga0182032_10789313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300016357\|Ga0182032_11176548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	659	Open in IMG/M
3300016371\|Ga0182034_10723214	All Organisms → cellular organisms → Bacteria → Proteobacteria	848	Open in IMG/M
3300016371\|Ga0182034_10919205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	753	Open in IMG/M
3300016371\|Ga0182034_11383487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	615	Open in IMG/M
3300016371\|Ga0182034_11591329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	573	Open in IMG/M
3300016387\|Ga0182040_11237610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	629	Open in IMG/M
3300016404\|Ga0182037_10501564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1018	Open in IMG/M
3300016422\|Ga0182039_10206136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1572	Open in IMG/M
3300016445\|Ga0182038_10113081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 15615	2000	Open in IMG/M
3300017823\|Ga0187818_10063937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1584	Open in IMG/M
3300017959\|Ga0187779_10122467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1584	Open in IMG/M
3300018060\|Ga0187765_10445575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	809	Open in IMG/M
3300021560\|Ga0126371_12438997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	633	Open in IMG/M
3300023068\|Ga0224554_1019247	Not Available	2131	Open in IMG/M
3300025650\|Ga0209385_1089803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1019	Open in IMG/M
3300026879\|Ga0207763_1017054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	724	Open in IMG/M
3300026945\|Ga0207743_1002528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2291	Open in IMG/M
3300026959\|Ga0207852_1012669	All Organisms → cellular organisms → Bacteria → Proteobacteria	903	Open in IMG/M
3300027266\|Ga0209215_1035695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	671	Open in IMG/M
3300027842\|Ga0209580_10661424	Not Available	517	Open in IMG/M
3300027898\|Ga0209067_10359507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	809	Open in IMG/M
3300027908\|Ga0209006_10000691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31430	Open in IMG/M
3300027948\|Ga0209858_1002460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1210	Open in IMG/M
3300028577\|Ga0265318_10043336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1	1705	Open in IMG/M
3300031545\|Ga0318541_10044490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2258	Open in IMG/M
3300031546\|Ga0318538_10329638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	824	Open in IMG/M
3300031564\|Ga0318573_10802036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	506	Open in IMG/M
3300031573\|Ga0310915_10151186	Not Available	1605	Open in IMG/M
3300031573\|Ga0310915_10225101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1316	Open in IMG/M
3300031573\|Ga0310915_10980551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	590	Open in IMG/M
3300031719\|Ga0306917_10229081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1417	Open in IMG/M
3300031724\|Ga0318500_10708949	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300031744\|Ga0306918_10065153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2479	Open in IMG/M
3300031744\|Ga0306918_11168923	Not Available	595	Open in IMG/M
3300031744\|Ga0306918_11380507	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300031763\|Ga0318537_10288604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	607	Open in IMG/M
3300031777\|Ga0318543_10057615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1600	Open in IMG/M
3300031796\|Ga0318576_10395643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	653	Open in IMG/M
3300031833\|Ga0310917_10076102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2117	Open in IMG/M
3300031879\|Ga0306919_10777146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	736	Open in IMG/M
3300031880\|Ga0318544_10150128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	893	Open in IMG/M
3300031890\|Ga0306925_10111887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2914	Open in IMG/M
3300031890\|Ga0306925_10659276	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300031890\|Ga0306925_12080415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	533	Open in IMG/M
3300031897\|Ga0318520_10251847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1054	Open in IMG/M
3300031910\|Ga0306923_12532466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	505	Open in IMG/M
3300031912\|Ga0306921_10897474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1006	Open in IMG/M
3300031941\|Ga0310912_11082764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	613	Open in IMG/M
3300031942\|Ga0310916_10511917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1022	Open in IMG/M
3300031942\|Ga0310916_10521176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1012	Open in IMG/M
3300031945\|Ga0310913_10739993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	695	Open in IMG/M
3300031945\|Ga0310913_11143103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300031946\|Ga0310910_10255196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1372	Open in IMG/M
3300031946\|Ga0310910_11223798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	582	Open in IMG/M
3300031954\|Ga0306926_10989459	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300031954\|Ga0306926_11445495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	796	Open in IMG/M
3300031954\|Ga0306926_11933516	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031954\|Ga0306926_12445055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	574	Open in IMG/M
3300031959\|Ga0318530_10174134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	879	Open in IMG/M
3300032001\|Ga0306922_11217682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	766	Open in IMG/M
3300032001\|Ga0306922_11663835	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300032035\|Ga0310911_10094920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1628	Open in IMG/M
3300032035\|Ga0310911_10359762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300032059\|Ga0318533_11003589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	612	Open in IMG/M
3300032059\|Ga0318533_11056020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	595	Open in IMG/M
3300032064\|Ga0318510_10410429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	578	Open in IMG/M
3300032068\|Ga0318553_10780826	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300032091\|Ga0318577_10593560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300032261\|Ga0306920_100854112	Not Available	1333	Open in IMG/M
3300032261\|Ga0306920_101500235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	963	Open in IMG/M
3300032261\|Ga0306920_101600496	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300032261\|Ga0306920_103177535	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.27%
Host-Associated	Host-Associated	6.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.42%
Plants	Host-Associated → Plants	4.81%
Aquatic	Environmental → Aquatic	3.85%
Human	Host-Associated → Human	0.96%
Arthropoda	Host-Associated → Arthropoda	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.85%
Sediment	Environmental → Aquatic → Sediment	2.88%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Peat	Environmental → Terrestrial → Peat	0.96%
Digestive System	Host-Associated → Human → Digestive System	0.96%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.04%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Sand	Environmental → Terrestrial → Soil → Sand	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.96%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.96%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.88%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.92%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.96%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.96%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.96%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300010009	Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #4 sample H4	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300026879	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 50 (SPAdes)	Environmental	Open in IMG/M
3300026945	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 (SPAdes)	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027948	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_05140510	2070309004	Green-Waste Compost	ELALETAEALGPDHYVTDRHGLQIWNPQRKLLRNEE
JGI24140J50213_101094731	3300003369	Arctic Peat Soil	HVTTHGGHTVQTFQSLESAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE*
Ga0070709_103853391	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPIAATLRFRVTTNRSHTVQTFQPLELALEAAKSLGLNYVIDRQGLQIWSPQRKLLRNEE
Ga0070763_108294881	3300005610	Soil	GHELHAPFRVTTHLGHTAQTFESLELALEAAEALGPDHYVTDRHGFQIWNEQRRLLRNEE
Ga0066903_1069771961	3300005764	Tropical Forest Soil	MFQSLELALEAAEALGPDCYVIDGHGLQIWNPQRKLLRN
Ga0075023_1002974991	3300006041	Watersheds	MLKGHGVHAPFHVTTHGGHTVQTFQSLELAFEAAEALGPDYYVIDRHGLQIWNQQRKLLRNEE*
Ga0075017_1002276123	3300006059	Watersheds	MLKGHGVHAPFHVTTHGGHTVQTFQSLESAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE*
Ga0075424_1011615571	3300006904	Populus Rhizosphere	QPLELALEAAKSLGLNYVIDRQGLQIWSPQRKLLRNEE*
Ga0105065_10364731	3300009803	Groundwater Sand	VTTHRGHTVQTFQSLELAIEAAESLGPDHYVIDAHGLQIWNPQRKLLRNEE*
Ga0133908_1038222	3300010009	Host-Associated	MQSFQSLEAALEAAETLGSDHYVIDRHGLQIWSPQRKLLRNEE*
Ga0126373_111404091	3300010048	Tropical Forest Soil	QTFQSLELALEAAEALGPDHYVIDRHGLQIWNQQRKLLRDEE*
Ga0126373_114299021	3300010048	Tropical Forest Soil	VQTFQSLELALEAAEALGPEHYVIDRHGLQIWNQERKLL
Ga0123356_124156131	3300010049	Termite Gut	VRTFDSLELAIEAAGSLGPDHYIIDRHGLQVWNPQRKLLRDEE*
Ga0126369_104517291	3300012971	Tropical Forest Soil	VQTFQSLELAIEAAESLGPNHYIIDRHGLQIWNPERKLLRNEE*
Ga0157374_126425112	3300013296	Miscanthus Rhizosphere	HTVQTFQPLELALEAAKSLGLNYVIDRQGLQIWSPQRKLLRNEE*
Ga0163163_121449222	3300014325	Switchgrass Rhizosphere	PIAATLRFRVTTNRSHTVQTFQPLELALEAAKSLGLNYVIDRQGLQIWSPQRKLLRNEE*
Ga0182014_101112363	3300014491	Bog	MLKRHGAHAPFHVTTHGGHTVQTFQSLESAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE*
Ga0182015_101447721	3300014495	Palsa	MPKGHGAHAPFHVTTHGGHTVQTFQSLESAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE*
Ga0182030_102520981	3300014838	Bog	MLKGHGVHAPFHVTTNRGHIVQTFQSLESAIEAAESLEPDHYVVDRHGLQIWNPQRKLLRNEE*
Ga0132256_1016804331	3300015372	Arabidopsis Rhizosphere	MQTFLSLEAALEAAESLGPDHYVIDRHGLQIWNPQRKLLRNEE*
Ga0182036_100548284	3300016270	Soil	APFRVTTHRGHTVQTFQSLELAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRSEE
Ga0182036_103102263	3300016270	Soil	PFRVTTHRRHTVQTFQSLELALEAAKSSGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0182036_107347141	3300016270	Soil	VQTFESLELALEAAEALGPDHYVTDRHGLQIWNPQRKLLRNEE
Ga0182036_108194751	3300016270	Soil	GHTVQTFQSLELAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE
Ga0182041_103816881	3300016294	Soil	RGHPVQTFQSLELALEAAEALGPDHYVTDRHGLQIWNQQRKLLRNEE
Ga0182041_116038351	3300016294	Soil	LHAPFHVTTHRGHTVLTFQSLELAIEAAQSLGPDHYIIDRHGLQIWNPQRKVLRNEE
Ga0182033_106591521	3300016319	Soil	ELAIEAAKFLGPDHYVIDRHGFQIWDPQRKLLRSEE
Ga0182033_111672231	3300016319	Soil	TTHRGHTVQTFQSLELALEAAKSSGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0182035_104997814	3300016341	Soil	APFRVTTHRGHTVQTFQSLELALEAAEALGPDHYVTDRHGLQIWNQQRKLLRNEE
Ga0182035_110928921	3300016341	Soil	LHAPFRVTTHRGHTVQTFQSLESALEAAESLGPDHYVVDQHGLQIWNQRRDLLRNEE
Ga0182035_111626832	3300016341	Soil	RHDIHAPFYVTTHHGHIVQTFQSLELAIEAAESLGPDHYIIDRHGQQIWDPERKLLRNEE
Ga0182032_107893131	3300016357	Soil	HGLHAPFRVTTHRGHTVQTFQSLELALEAAEALGPDHYVIDRHGLQIWNPQRKVLRNEE
Ga0182032_111765481	3300016357	Soil	VGHSLHAPFRVTTHRGHTVQTFQSLEMALEAAEALGPDHFVIDRHGLQIWNPQRKLLRNE
Ga0182034_107232141	3300016371	Soil	PFRVTTHHGHTVQTFQSLELALEAAEHLGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0182034_109192051	3300016371	Soil	HGLHAPFRVTTHRGHTVQTFQSLELALEAAESLGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0182034_113834873	3300016371	Soil	TVLTFQSLELAIEAAQSLGPDHYIIDRHGLQIWNPQRKVLRNEE
Ga0182034_115913292	3300016371	Soil	QTFQSLESALEAAESLGPDHYVVDQHGLQIWNQRRDLLRNEE
Ga0182040_112376101	3300016387	Soil	ELALEAAQSLGPDHCVIDRHGLQIWNPQRKLLRNEE
Ga0182037_105015641	3300016404	Soil	LETALEAAQALGPDYYVIDRHGAQIWSSQRKLLRTEE
Ga0182039_102061361	3300016422	Soil	LALEAAEALGPDHYVTDRHGLQIWNQQRKLLRNEE
Ga0182038_101130811	3300016445	Soil	GHGLHGPFRVTTHRGHTVQTFQSLELALEAAKSSGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0187818_100639372	3300017823	Freshwater Sediment	TTHRGHTVQTFQSLESALEAAEALGPDHYVIDRHGLQIWNSQRRLLRNEE
Ga0187779_101224672	3300017959	Tropical Peatland	MFQSLELALEAAEALGPDHCVIDRHGLQIWNRQRKLLRNEE
Ga0187765_104455751	3300018060	Tropical Peatland	MFQSLELALEAAAALGPDHYVIDRHGLQIWNQQRKLLRDEE
Ga0126371_124389973	3300021560	Tropical Forest Soil	APFRVTTHRGHTVQTFQSLELALEAAEALGPDHYVIDRHGLQIWNQQRKLLRDEE
Ga0224554_10192472	3300023068	Soil	MQSFQSLEAALEAAETLGSDHYVIDRHGLQIWSPQRKLLRNEE
Ga0209385_10898031	3300025650	Arctic Peat Soil	GHTVQTFQSLESAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE
Ga0207763_10170541	3300026879	Tropical Forest Soil	PFRVTTRRGHTMQTFQSLELAIEAAESLGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0207743_10025283	3300026945	Tropical Forest Soil	VQTFQSLELALEAAEALGPDHYVIDRHGLQIWNQQRKLLRNEE
Ga0207852_10126692	3300026959	Tropical Forest Soil	VHAPFRVTTHRGHTVQTFESLELALEAAEALGPDHYVIDRHGLQIWNQQRKLMRNEE
Ga0209215_10356952	3300027266	Forest Soil	PFHVTTHHGHTVQTFQSLELAIEAAESLGPDHYVVDRHGLQIWDPQRKLLRNEE
Ga0209580_106614241	3300027842	Surface Soil	HTVQTFQSLEMAIEAAEALGPDHYVIDRHGLQIWNSQRKLLRNEE
Ga0209067_103595071	3300027898	Watersheds	MLKGHGVHAPFHVTTHGGHTVQTFQSLESAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE
Ga0209006_1000069123	3300027908	Forest Soil	VTTHLGHTAQTFESLELALEAAEALGPDHYVTDRHGFQIWNEQRRLLRNEE
Ga0209858_10024602	3300027948	Groundwater Sand	VTTHRGHTVQTFQSLELAIEAAESLGPDHYVIDAHGLQIWNPQRKLLRNEE
Ga0265318_100433362	3300028577	Rhizosphere	MQSFQSLESALEAAETLGSDHYVTDRHGLQIWSPQRKLLRNEE
Ga0318541_100444905	3300031545	Soil	LQTFESLELAIEAAESLGPDHYVIDRHGFQIWNPQRKLLRSEE
Ga0318538_103296382	3300031546	Soil	MFESLELAIEAAKFLGPDHYVIDRHGFQIWDPQRKLLRSEE
Ga0318573_108020362	3300031564	Soil	APFRVTTRRGHTVQTFQSLELAIEAAETLGPDHYVVDRHGLQIWNPQRKLLRSEE
Ga0310915_101511861	3300031573	Soil	GHYVHSPFRVTTHRGHTVQTFQSLELALEAAEALGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0310915_102251011	3300031573	Soil	LALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0310915_109805511	3300031573	Soil	ESHGIHAPFRVTTHRGHTVQTFQSLELALEAAEALGPDHYVTDHHGLQIWNPQRKLLRNE
Ga0306917_102290814	3300031719	Soil	PFRVTTHRGHTVQTFQSLELALEAAEALGPDHYVTDRHGLQIWNQQRKLLRNEE
Ga0318500_107089492	3300031724	Soil	LELALEAAESLGPDHYVIDGHGLQIWNPQRKLLRNEE
Ga0306918_100651531	3300031744	Soil	FQSLELALEAAESLGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0306918_111689233	3300031744	Soil	THRGHTVQTFQSLELALEAAEALGPGHYVIDRHGLQIWNPQRKLLRNEE
Ga0306918_113805071	3300031744	Soil	THRGHTVQTFQSLELALEAAESLGPDHYVIDGHGLQIWNPQRKLLRNEE
Ga0318537_102886041	3300031763	Soil	GLHAPFRVTTHRGHTVQTFQSLELALEAAQSLGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0318543_100576151	3300031777	Soil	HTLQTFESLELAIEAAESLGPDHYVIDRHGFQIWNPQRKLLRSEE
Ga0318576_103956432	3300031796	Soil	IQGHGLHGPFRVTTHRGHTVQTFQSLELALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0310917_100761026	3300031833	Soil	TFQSLELALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNQE
Ga0306919_107771462	3300031879	Soil	HGPFRVMTHRGHTVQTFQSLELALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0318544_101501281	3300031880	Soil	EGHGLHAPFRVTTHRGHTVQTFQSLELALEAAQSLGPDHYVIDRHGLQIWNPQRKLLRNE
Ga0306925_101118873	3300031890	Soil	VQTFQSLELALEAAEALGPGHYVIDRHGLQIWNQQRKLLRDEE
Ga0306925_106592761	3300031890	Soil	DDLLHAPFRVTTHRGHTVQTFQSLELALEAAEALGPDHYVIDRHGLQIWNQERKLLRDEE
Ga0306925_120804151	3300031890	Soil	APFRVTTRRGHTVQTLQSLELALEAAEALGPDHYVIDRHGLQIWNPQRKLVRNEE
Ga0318520_102518473	3300031897	Soil	GLHAPFRVTTHHGHTVQTFQSLELAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE
Ga0306923_125324662	3300031910	Soil	SLHAPFRVTTHRGHTVGTFQSLESALEAAESLGPDHFVIDRHGLQIWNPQRKLLRNEE
Ga0306921_108974743	3300031912	Soil	GHTVQTFQSLELALEAAEALGPDHYVIDRHGLQIWNPQRKLMRNEE
Ga0310912_110827641	3300031941	Soil	KLERGHGIHDPFRVTTHRGHTVQTFHSLELALEAAKSLGPDHYVVDRHGLQIWSRQRELLRNEE
Ga0310916_105119171	3300031942	Soil	VTTHRGHAVQTFQSLELAIEAAETLGPDHYVVDRHGLQIWNPQRKLLRSEE
Ga0310916_105211761	3300031942	Soil	HHGHTLQTFESLELAIEAAESLGPDHYVIDRHGFQIWNPQRKLLRSEE
Ga0310913_107399932	3300031945	Soil	LALEAAEALGPDHYVIDRHGLQIWNPQRKLMRNEE
Ga0310913_111431032	3300031945	Soil	VTTHRGHTVQTFQSLELALEAAEALGPGHYVIDRHGLQIWNQQRKLLRDEE
Ga0310910_102551964	3300031946	Soil	TVQTFQSLELALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNQE
Ga0310910_112237982	3300031946	Soil	LELALEAAEALGPDHYVIDRHGLQIWNPERKLLRDEE
Ga0306926_109894591	3300031954	Soil	FESLELAIEAAKFLGPDHYVIDRHGFQIWDPQRKLLRSEE
Ga0306926_114454951	3300031954	Soil	LELALEAAEALGPDHYVIDRHGLQIWNPQRKLVRNEE
Ga0306926_119335163	3300031954	Soil	SLELALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNQE
Ga0306926_124450552	3300031954	Soil	RVTTHRGHTVQTFQSLELALEAAESLGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0318530_101741341	3300031959	Soil	GHTLQTFESLELAIEAAESLGPDHYVIDRHGFQIWNPQRKLLRSEE
Ga0306922_112176822	3300032001	Soil	TFQSLELALEAAEALGPDHYVIDRHGLQIWNPQRKLVRNEE
Ga0306922_116638352	3300032001	Soil	MFQSLELALEAAESLGPDHYIIDGHGLQIWNSQRKLLRNEE
Ga0310911_100949201	3300032035	Soil	HHGHTVQTFQSLELAIEAAESLGPDHYVVDRHGLQIWNPQRKLLRNEE
Ga0310911_103597621	3300032035	Soil	VTTHRGHTVQTFQPLELALEAAEALGPDHYVTDRRGLQIWNPERKLLRNEE
Ga0318533_110035892	3300032059	Soil	VQAFQSLELALEAAEALGPDHYVIDRHGLQIWNQQRKLLRDEE
Ga0318533_110560202	3300032059	Soil	LELALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0318510_104104291	3300032064	Soil	TTHRGHTVQTFQSLELALEAAQSLGPDHYVIDRHGLQIWNPQGKVLRNEE
Ga0318553_107808261	3300032068	Soil	LHGPFRVTTHRGHTVRTFQSLELALEAAKSLGPDHYVIDRHGLQIWNPQRELLRNEE
Ga0318577_105935601	3300032091	Soil	FQSLELALEAAEALGPDHYVIDRHGLQIWNPQRKLLRNEE
Ga0306920_1008541123	3300032261	Soil	AGEQHGLHAPFPVTTHRGHTVQTFQSLELALEAAQSLGPDHYVIDRHGLQIWNPQGKVLRNEE
Ga0306920_1015002352	3300032261	Soil	MFYATESGIVRTFQSLELAIEAAESLGPDHYIIDRHGQQNWNPERKLLRNEE
Ga0306920_1016004961	3300032261	Soil	HIVETFQSLEAALEAAESLGQDHYVVDRHGLQIWNPQRKLLRNEE
Ga0306920_1031775352	3300032261	Soil	VQMFQSLELALEAAESLGPDHYIIDGHGLQIWNSQRKLLRNEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096744

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences