Metagenome Family F096741

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096741
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	70 residues
Representative Sequence	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTAPPR
Number of Associated Samples	88
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.50 %
% of genes near scaffold ends (potentially truncated)	30.77 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.423 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.231 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.33% β-sheet: 0.00% Coil/Unstructured: 41.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13467	RHH_4	38.46
PF00230	MIP	5.77
PF00216	Bac_DNA_binding	2.88
PF12728	HTH_17	1.92
PF10066	DUF2304	1.92
PF01738	DLH	1.92
PF00072	Response_reg	0.96
PF00589	Phage_integrase	0.96
PF05016	ParE_toxin	0.96
PF14373	Imm_superinfect	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	5.77
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	2.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.42 %
Unclassified	root	N/A	35.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.42 %
Unclassified	root	N/A	35.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.42 %
Unclassified	root	N/A	35.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.35 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
Erwiniaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae	0.96 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.96 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.96 %
Pantoea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea	0.96 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.88 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.96 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.96 %
Pantoea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.77 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.92 %
Bradyrhizobium sp. AUGA SZCCT0431	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	0.96 %
Methylobacterium sp. C25	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. C25	0.96 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.96 %
Pantoea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000041\|ARcpr5oldR_c000804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3532	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c010757	Not Available	775	Open in IMG/M
3300004058\|Ga0055498_10031931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	848	Open in IMG/M
3300004058\|Ga0055498_10090857	Not Available	605	Open in IMG/M
3300004114\|Ga0062593_100350302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1291	Open in IMG/M
3300004114\|Ga0062593_100527029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1104	Open in IMG/M
3300004479\|Ga0062595_101360822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	644	Open in IMG/M
3300004479\|Ga0062595_101699962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	594	Open in IMG/M
3300004643\|Ga0062591_100859358	Not Available	845	Open in IMG/M
3300005168\|Ga0066809_10087951	Not Available	745	Open in IMG/M
3300005169\|Ga0066810_10166752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	536	Open in IMG/M
3300005204\|Ga0068997_10018876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1112	Open in IMG/M
3300005218\|Ga0068996_10014731	All Organisms → cellular organisms → Bacteria → Proteobacteria	1168	Open in IMG/M
3300005290\|Ga0065712_10424455	Not Available	709	Open in IMG/M
3300005335\|Ga0070666_11244064	Not Available	555	Open in IMG/M
3300005340\|Ga0070689_100939963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	766	Open in IMG/M
3300005341\|Ga0070691_10106383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1399	Open in IMG/M
3300005347\|Ga0070668_100579474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	979	Open in IMG/M
3300005367\|Ga0070667_102001507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	546	Open in IMG/M
3300005439\|Ga0070711_101468908	Not Available	594	Open in IMG/M
3300005441\|Ga0070700_101526270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	568	Open in IMG/M
3300005444\|Ga0070694_100110975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1954	Open in IMG/M
3300005458\|Ga0070681_11365647	Not Available	632	Open in IMG/M
3300005546\|Ga0070696_101254784	Not Available	628	Open in IMG/M
3300005563\|Ga0068855_102331989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	535	Open in IMG/M
3300005617\|Ga0068859_100770214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1051	Open in IMG/M
3300005617\|Ga0068859_101405143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	770	Open in IMG/M
3300006058\|Ga0075432_10057152	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300006904\|Ga0075424_102584361	Not Available	531	Open in IMG/M
3300009029\|Ga0066793_10008672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5295	Open in IMG/M
3300009094\|Ga0111539_10063004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4388	Open in IMG/M
3300009148\|Ga0105243_11341737	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300009156\|Ga0111538_10975325	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300009545\|Ga0105237_10859210	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300009551\|Ga0105238_10670210	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300010359\|Ga0126376_10990954	Not Available	839	Open in IMG/M
3300010373\|Ga0134128_11780696	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300010399\|Ga0134127_11522694	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300010400\|Ga0134122_10506630	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300012010\|Ga0120118_1055565	Not Available	991	Open in IMG/M
3300012490\|Ga0157322_1015407	Not Available	680	Open in IMG/M
3300012501\|Ga0157351_1007568	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300012505\|Ga0157339_1047714	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300012908\|Ga0157286_10088236	Not Available	886	Open in IMG/M
3300012955\|Ga0164298_10329790	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300012957\|Ga0164303_10230365	Not Available	1048	Open in IMG/M
3300012961\|Ga0164302_10296349	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300012961\|Ga0164302_10475791	Not Available	875	Open in IMG/M
3300012984\|Ga0164309_10210716	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300012985\|Ga0164308_11316649	Not Available	657	Open in IMG/M
3300012986\|Ga0164304_10216793	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300012986\|Ga0164304_10249423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1189	Open in IMG/M
3300012987\|Ga0164307_10534548	Not Available	892	Open in IMG/M
3300012989\|Ga0164305_10337433	Not Available	1129	Open in IMG/M
3300013306\|Ga0163162_10039223	All Organisms → cellular organisms → Bacteria	4732	Open in IMG/M
3300013772\|Ga0120158_10015820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6521	Open in IMG/M
3300015077\|Ga0173483_10139377	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300015200\|Ga0173480_10689954	Not Available	639	Open in IMG/M
3300015371\|Ga0132258_10725727	All Organisms → cellular organisms → Bacteria	2503	Open in IMG/M
3300015371\|Ga0132258_10896210	All Organisms → cellular organisms → Bacteria → Proteobacteria	2239	Open in IMG/M
3300015371\|Ga0132258_10913179	Not Available	2217	Open in IMG/M
3300015371\|Ga0132258_11062067	Not Available	2047	Open in IMG/M
3300015371\|Ga0132258_13726733	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300015372\|Ga0132256_100408744	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300015373\|Ga0132257_100110420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. C25	3178	Open in IMG/M
3300015373\|Ga0132257_100510686	Not Available	1475	Open in IMG/M
3300015373\|Ga0132257_100829396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	1156	Open in IMG/M
3300015374\|Ga0132255_103697055	Not Available	650	Open in IMG/M
3300017792\|Ga0163161_10822826	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300018032\|Ga0187788_10006302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3624	Open in IMG/M
3300018064\|Ga0187773_10170559	Not Available	1137	Open in IMG/M
3300019356\|Ga0173481_10232287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300019356\|Ga0173481_10326205	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300025901\|Ga0207688_10298223	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300025907\|Ga0207645_10466243	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300025919\|Ga0207657_10392478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1092	Open in IMG/M
3300025923\|Ga0207681_10155406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea	1719	Open in IMG/M
3300025930\|Ga0207701_10213799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1691	Open in IMG/M
3300025930\|Ga0207701_10483917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1060	Open in IMG/M
3300025932\|Ga0207690_11492794	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300025934\|Ga0207686_10456039	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300025936\|Ga0207670_11236347	Not Available	633	Open in IMG/M
3300025937\|Ga0207669_10214003	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300025981\|Ga0207640_11353479	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300026075\|Ga0207708_10516120	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300026089\|Ga0207648_10123579	Not Available	2276	Open in IMG/M
3300026802\|Ga0207511_101628	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300027523\|Ga0208890_1032751	Not Available	788	Open in IMG/M
3300027682\|Ga0209971_1173861	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300027717\|Ga0209998_10188138	Not Available	538	Open in IMG/M
3300027876\|Ga0209974_10111170	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300027876\|Ga0209974_10319439	Not Available	597	Open in IMG/M
3300027907\|Ga0207428_10607415	Not Available	788	Open in IMG/M
3300028796\|Ga0307287_10104474	Not Available	1070	Open in IMG/M
3300031170\|Ga0307498_10000723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4508	Open in IMG/M
3300031226\|Ga0307497_10599679	Not Available	557	Open in IMG/M
3300031538\|Ga0310888_10042763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2080	Open in IMG/M
3300031716\|Ga0310813_12249472	Not Available	516	Open in IMG/M
3300032003\|Ga0310897_10031828	All Organisms → cellular organisms → Bacteria	1789	Open in IMG/M
3300032012\|Ga0310902_10236145	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300032122\|Ga0310895_10006094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3379	Open in IMG/M
3300033433\|Ga0326726_11335599	Not Available	698	Open in IMG/M
3300033433\|Ga0326726_11703934	Not Available	614	Open in IMG/M
3300033475\|Ga0310811_10517881	Not Available	1240	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.69%
Host-Associated	Host-Associated	42.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.85%
Plants	Host-Associated → Plants	42.31%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.31%
Marine	Environmental → Aquatic → Marine	3.85%
Peat	Environmental → Terrestrial → Peat	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	11.54%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.65%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	11.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.23%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.81%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.96%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026802	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5oldR_0008042	3300000041	Arabidopsis Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIXSSPPTXPPR*
ARcpr5yngRDRAFT_0107572	3300000043	Arabidopsis Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTAPPR*
Ga0055498_100319311	3300004058	Natural And Restored Wetlands	MPQLLTNPAHWRHRAQEARWLAHQLEDPEAKAAKLEMAGKYDRLAARATEWVSKTEKIPQFLMSGPSIAL*
Ga0055498_100908571	3300004058	Natural And Restored Wetlands	MPQLLTDPTHWRLRAQEARRLAQRLDDPDAKAAKHAMADKYERLAARATEWINKTEGIPQFLKSAPPTTS*
Ga0062593_1003503022	3300004114	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTVPPR*
Ga0062593_1005270292	3300004114	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSAPTR*
Ga0062595_1013608222	3300004479	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTAPQRSSIKPRSE*
Ga0062595_1016999621	3300004479	Soil	MPQLLTDPAHWRLRAQEAHQRAKRAKDPLDRAAQLEMAYKYDRLAERATEWSNKTENSPQVIVSSPPTAPLTK*
Ga0062591_1008593581	3300004643	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLATRATEWMNKTENSPQLIVSSPPTVPPR*
Ga0066809_100879511	3300005168	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAERATEWMNKTENSPQLIVSSPPTAPPR*
Ga0066810_101667521	3300005169	Soil	MPQLLTDPAHWRLRAQQAQQLAQRSKDPLERAAKLEMASKYDRLAARATEWMKKTENSLGVTVSSPPPRPY*
Ga0068997_100188762	3300005204	Natural And Restored Wetlands	MPQLLTNPTHWRLRAQEARRLAQQLNDPDAKAAKHAMADKYERLAARATEWINKTTEDIPQFLKSAPPTASCG*
Ga0068996_100147312	3300005218	Natural And Restored Wetlands	MPQLLTDPTHWRLRAQEARRLAQQLNDPDAKAAKHAMADKYERLAARATEWINKTTEDIPQFLKSAPPTAS*
Ga0065712_104244551	3300005290	Miscanthus Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSS
Ga0070666_112440642	3300005335	Switchgrass Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPT
Ga0070689_1009399631	3300005340	Switchgrass Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSGPTR*
Ga0070691_101063832	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	PTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS*
Ga0070668_1005794742	3300005347	Switchgrass Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQLIVSSPPTAPPR*
Ga0070667_1020015072	3300005367	Switchgrass Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDQLDRAAKLEMADKYDRLAARATEWMNKTENSAQVISGIKRTST
Ga0070711_1014689081	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPQLLTDPVHWRLRAQEALQRAKRAKDPLDRAAHLEMAYKYDRLAERSTEWSNKTENTPQVIVSSPPTAPLTK*
Ga0070700_1015262702	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS*
Ga0070694_1001109751	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	HWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS*
Ga0070681_113656471	3300005458	Corn Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQ
Ga0070696_1012547841	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTVPPR*
Ga0068855_1023319891	3300005563	Corn Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDQLDRAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTAPQRSSIKPRSE*
Ga0068859_1007702141	3300005617	Switchgrass Rhizosphere	MPQLLTDPTHWRLRAQQAHQLAQRLKDPLDRAAKLEMAYKYERLAVRATEWMNKTENS
Ga0068859_1014051431	3300005617	Switchgrass Rhizosphere	WLMPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTVPPR*
Ga0075432_100571524	3300006058	Populus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLI
Ga0075424_1025843611	3300006904	Populus Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSAPTR*
Ga0066793_100086726	3300009029	Prmafrost Soil	MPQLLTNPAHWHLRAQEARRLAQQLENPEAKAVKLKMADKYDRLAARATEWMNKTEDIPQFLKRPIAP*
Ga0111539_100630041	3300009094	Populus Rhizosphere	PTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSAPTR*
Ga0105243_113417372	3300009148	Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAVRATEWMNKTENSPQ
Ga0111538_109753252	3300009156	Populus Rhizosphere	MPQLFTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS*
Ga0105237_108592102	3300009545	Corn Rhizosphere	MPQLLTDPAHWRLRAQQAHQLAQRLKDPLDRAAKLEMADKYDRLAVRATEWMNKTENSPQLIVSSPPTVPPR*
Ga0105238_106702103	3300009551	Corn Rhizosphere	MPQLLTDPAHWRLRAQQAHQLAQRLKDPLDRAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTARRRS*
Ga0126376_109909541	3300010359	Tropical Forest Soil	MSQLLTDPDHWRLRAQEARRSAQQHEDPEAKAAKLGMADKYDRLAARAAEWTRKTEDIPQFLKSGPTIAP*
Ga0134128_117806961	3300010373	Terrestrial Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAVRATEWMNKTENSPQVVVSSPPAARRRS*
Ga0134127_115226941	3300010399	Terrestrial Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSAQVISGIKRTSTVEAVTGK
Ga0134122_105066303	3300010400	Terrestrial Soil	MPQLLTDPAHWRLRAQQAHQLAQRLKDPLDRAAKLEMADKYDRLAARATEWMNKTENSP
Ga0120118_10555651	3300012010	Permafrost	MPQLLTNPAHWHLRAQEARRLAQQLENPEAKAVKLKMADKYDRLAARATEWMTRPRIFRSA*
Ga0157322_10154071	3300012490	Arabidopsis Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTAPPR*
Ga0157351_10075683	3300012501	Unplanted Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSA
Ga0157339_10477142	3300012505	Arabidopsis Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAVRATEWMNKTENSPQVVVSSPPTAPPRSSIKP
Ga0157286_100882362	3300012908	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTAPQRSSIKPRSE*
Ga0164298_103297902	3300012955	Soil	DPTHWRLRAQESHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS*
Ga0164303_102303652	3300012957	Soil	MPQLLTDPAHWRLRAQEAHQRAKRAKDPLDRAAQLEMAYKYDRLAERATEWSNKTENSPQVIVSSP
Ga0164302_102963491	3300012961	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAARATEWMTKTENSPEVISGVKRTSTVE
Ga0164302_104757912	3300012961	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIASSPPTVPPR*
Ga0164309_102107164	3300012984	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDWAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS*
Ga0164308_113166491	3300012985	Soil	MPQLLTDPAQWRLRAQEAHQRAKRAKDPLDRAAQLEMAYKYDRLAERATEWSNKTENSPQVIVSSPPTAPLTK*
Ga0164304_102167931	3300012986	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTAPPRSSIKPRSE*
Ga0164304_102494232	3300012986	Soil	MFQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSLPTAPPR*
Ga0164307_105345483	3300012987	Soil	MPQLLTDPAHWRLRAQQAHQLAQRLKDPLDRAAKLEMADKYDRLAARATEWMNKTENSPQVIVSSPPTTPPR*
Ga0164305_103374331	3300012989	Soil	MPQLLTDPAHWRLRAQEAHQRAKRAKDPLDRAAQLEMAYKYDRLAERATEWSNKTENSPQVIVS
Ga0163162_100392233	3300013306	Switchgrass Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLNDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTVPPR*
Ga0120158_100158201	3300013772	Permafrost	MPQLLTNPAHWHLRAQEARRLAQQLENPEAKAVKLKMADKYDRLAARATEWMTRPRIFRSS*
Ga0173483_101393771	3300015077	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAARATEWMNKTENSHSSAPTR*
Ga0173480_106899542	3300015200	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTAPQRSSIKPRSE*
Ga0132258_107257274	3300015371	Arabidopsis Rhizosphere	MPQLLTDPTHWRLRAQQAHQLAQRLKDPLERAAKLEMADKYDRLAVRATEWMNKTENSPQVVVSSPPTAPPRSSIKPRSE*
Ga0132258_108962103	3300015371	Arabidopsis Rhizosphere	MPQLLTDPAHWRLRAQQAHQLAQRSKDPLERAAKLEMAYKYDRLATRATEWMNKTENSPQVIESSPPTAPPRLDR*
Ga0132258_109131793	3300015371	Arabidopsis Rhizosphere	MPQLLTDPPHWRLRAQQARQLAQRLEDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVIVSSPPTAPSR*
Ga0132258_110620673	3300015371	Arabidopsis Rhizosphere	MPQLLTDPAHWRLRAQQAHQLAQRSKDPLERAAKLEMAYKYDRLAARATEWINKTKNSPQVIVSSLPTAPPR*
Ga0132258_137267332	3300015371	Arabidopsis Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAVRATEWMNKTENSPQVVVSSPPTARRRS*
Ga0132256_1004087441	3300015372	Arabidopsis Rhizosphere	MPQLLTDPTHWRLRAQQAHQLAQRLKDPLERAAKLEMADKYDRLAVRATEWMNKTENS
Ga0132257_1001104201	3300015373	Arabidopsis Rhizosphere	DPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYGRLAARATEWMNKTENSHSSAPTR*
Ga0132257_1005106862	3300015373	Arabidopsis Rhizosphere	MPQLLTDPPHWRLRAQQARQLAQRLEDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVIVSSPPTAPPR*
Ga0132257_1008293963	3300015373	Arabidopsis Rhizosphere	QLLTDPTHWRLRAQQAHQLAQRLKDPLERAAKLEMADKYDRLAVRATEWMNKTENSPQVVVSSPPTAPPRSSIKPRSE*
Ga0132255_1036970551	3300015374	Arabidopsis Rhizosphere	MPQLLTDPPHWRLRAQQARQLAQRLEDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVIVSSPSTAPSR*
Ga0163161_108228262	3300017792	Switchgrass Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTAPQRSSIKPRSE
Ga0187788_100063025	3300018032	Tropical Peatland	MPQLLTNPTHWHSRAQEARRLAQQLKDPDAKAAKLEMADKYDRLAARATEWMNKTKKVPRISSPPTAP
Ga0187773_101705593	3300018064	Tropical Peatland	MPQLLTNPTHWHSRAQEARRLAQQLKDPDAKAAKLEMADKYDRLAARATEWMNKTKKVPPISSPPTAP
Ga0173481_102322871	3300019356	Soil	HWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTAPQRSSIKPRSE
Ga0173481_103262052	3300019356	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSAPTR
Ga0207688_102982232	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTARRRS
Ga0207645_104662432	3300025907	Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS
Ga0207657_103924782	3300025919	Corn Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTARRRS
Ga0207681_101554061	3300025923	Switchgrass Rhizosphere	QLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTARRRS
Ga0207701_102137992	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTVPPR
Ga0207701_104839172	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQVVVSSPPTAPQRSSIKPRSE
Ga0207690_114927942	3300025932	Corn Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSAQVI
Ga0207686_104560392	3300025934	Miscanthus Rhizosphere	LLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTARRRS
Ga0207670_112363471	3300025936	Switchgrass Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSGPTR
Ga0207669_102140031	3300025937	Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAVRATEWMNKTENSPQVVVSSPPAARRRS
Ga0207640_113534791	3300025981	Corn Rhizosphere	MPQLLTDPAHWRLRAQQAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTAPPR
Ga0207708_105161201	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVIVSSPPTAPPR
Ga0207648_101235796	3300026089	Miscanthus Rhizosphere	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSAPTR
Ga0207511_1016282	3300026802	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAVRATEWMNKTENSHSSAPTR
Ga0208890_10327511	3300027523	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTAPPR
Ga0209971_11738611	3300027682	Arabidopsis Thaliana Rhizosphere	MPQLLTDPTHWHLRAQQAHQLALRLKDPLDRAAKLEMADKYDRLAARATEWMNKTENSPQVNSGVKR
Ga0209998_101881381	3300027717	Arabidopsis Thaliana Rhizosphere	HWRLRAQEAYQLAQRLKDPLERAAKLEMADKYDHLAARATEWMNKTENSPQLIVSSPPTAPPRS
Ga0209974_101111703	3300027876	Arabidopsis Thaliana Rhizosphere	MPQLLTDPAHWRLRAQEAYQLAQRLKDPLERAAKLEMADKYDHLAARATEWMNKTENSPQLIVSSPPTAPPRS
Ga0209974_103194392	3300027876	Arabidopsis Thaliana Rhizosphere	MPQLLTDPTHWRLRAQQAHQLAQRLKDPLDRAAKLEMAYKYERLAVRATEWINKTTSSGGNQQGAQ
Ga0207428_106074151	3300027907	Populus Rhizosphere	DPTHWRLRAQEAHQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSHSSAPTR
Ga0307287_101044742	3300028796	Soil	VTDPAHWHLRAQEARRRAQQVKDREAKAVQLPMADKYDRLGARATEWMNKTDGIPQFLKRPLTAA
Ga0307498_100007237	3300031170	Soil	MPQLLTNPAHWRLRAQEARRRAQQLEDPEAKAAKLKMADKYDRLAARATEWGNKTEDIPQFLKRRN
Ga0307497_105996791	3300031226	Soil	MPQLLTDPTHWRSRAQQARQLAQRLNDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTVPPR
Ga0310888_100427633	3300031538	Soil	MPQLLTDPTHWRLRAQEAHQLAQRLKDPLDRAAKLEMADKYDRLAMRATEWMNKTENSPQVVVSSPPTAPPR
Ga0310813_122494721	3300031716	Soil	MPQLLTDPAHWRLRAQEAHQRAKRAKDPLDRAAQLEMAYKYDRLAERATEWSNKTENSPQVIVSSPPTAPLTK
Ga0310897_100318282	3300032003	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLNVSSPPTAPPR
Ga0310902_102361453	3300032012	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIASSPPTV
Ga0310895_100060947	3300032122	Soil	MPQLLTDPTHWRSRAQQARQLAQRLKDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIASSPPTVPPR
Ga0326726_113355992	3300033433	Peat Soil	MPELLTDPAHWHLRAQEARRRAQKLEDPEAKALQNKMADKYEDLAARAEEWMSKHEGIPQFLKSGPATAP
Ga0326726_117039341	3300033433	Peat Soil	MPQLLTNPAHWRHRAQEARWLAQQLEDPEAKAAKLEMAGKYDRLAARATEWMSKTEKIPQFLMSGDDDGQEEVINTRQPN
Ga0310811_105178812	3300033475	Soil	MPHLLTDPTHWRSRAQQARQLAQRLNDPLERAAKLEMADKYDRLAARATEWMNKTENSPQLIVSSPPTVPPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096741

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences