Metagenome Family F096725

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096725
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	66 residues
Representative Sequence	MERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Number of Associated Samples	68
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	70.19 %
% of genes near scaffold ends (potentially truncated)	46.15 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.038 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (16.346 % of family members)
Environment Ontology (ENVO)	Unclassified (58.654 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (74.038 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.45% β-sheet: 0.00% Coil/Unstructured: 42.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13411	MerR_1	25.00
PF09278	MerR-DNA-bind	6.73
PF07238	PilZ	4.81
PF07589	PEP-CTERM	3.85
PF00216	Bac_DNA_binding	2.88
PF00565	SNase	2.88
PF00847	AP2	1.92
PF04471	Mrr_cat	0.96
PF00873	ACR_tran	0.96
PF04909	Amidohydro_2	0.96
PF04545	Sigma70_r4	0.96
PF00114	Pilin	0.96
PF12244	DUF3606	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0789	DNA-binding transcriptional regulator, MerR family	Transcription [K]	6.73
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	2.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
All Organisms	root	All Organisms	25.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
cellular organisms	root	All Organisms → cellular organisms	25.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.04 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
Boseaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	0.96 %
Bosea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
unclassified Bosea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea	0.96 %
Desulfobacterales bacterium S5133MH16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S5133MH16	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.04 %
Bosea sp. RAC05	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. RAC05	0.96 %
Desulfobacterales bacterium S5133MH16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S5133MH16	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_10014	Not Available	833	Open in IMG/M
3300000891\|JGI10214J12806_11365431	Not Available	631	Open in IMG/M
3300004114\|Ga0062593_101360371	Not Available	756	Open in IMG/M
3300005093\|Ga0062594_100712909	All Organisms → cellular organisms → Bacteria → Proteobacteria	908	Open in IMG/M
3300005185\|Ga0066811_1005382	Not Available	814	Open in IMG/M
3300005290\|Ga0065712_10344981	Not Available	784	Open in IMG/M
3300005290\|Ga0065712_10477793	Not Available	663	Open in IMG/M
3300005328\|Ga0070676_10277230	Not Available	1128	Open in IMG/M
3300005328\|Ga0070676_10396159	Not Available	959	Open in IMG/M
3300005330\|Ga0070690_100206760	Not Available	1368	Open in IMG/M
3300005331\|Ga0070670_100082337	All Organisms → cellular organisms → Bacteria → Proteobacteria	2765	Open in IMG/M
3300005331\|Ga0070670_100173545	Not Available	1870	Open in IMG/M
3300005331\|Ga0070670_100379268	Not Available	1246	Open in IMG/M
3300005331\|Ga0070670_101197979	Not Available	694	Open in IMG/M
3300005331\|Ga0070670_101502240	Not Available	618	Open in IMG/M
3300005331\|Ga0070670_101531342	Not Available	612	Open in IMG/M
3300005333\|Ga0070677_10268469	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300005333\|Ga0070677_10487989	Not Available	666	Open in IMG/M
3300005338\|Ga0068868_100854292	All Organisms → cellular organisms → Bacteria → Proteobacteria	824	Open in IMG/M
3300005338\|Ga0068868_101367190	Not Available	659	Open in IMG/M
3300005340\|Ga0070689_100436198	Not Available	1112	Open in IMG/M
3300005345\|Ga0070692_11049288	Not Available	573	Open in IMG/M
3300005347\|Ga0070668_100706403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	889	Open in IMG/M
3300005353\|Ga0070669_100335182	Not Available	1224	Open in IMG/M
3300005353\|Ga0070669_100685828	Not Available	864	Open in IMG/M
3300005354\|Ga0070675_100390829	Not Available	1239	Open in IMG/M
3300005354\|Ga0070675_100886234	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300005354\|Ga0070675_101363720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	654	Open in IMG/M
3300005354\|Ga0070675_101381837	Not Available	649	Open in IMG/M
3300005356\|Ga0070674_101262481	Not Available	657	Open in IMG/M
3300005364\|Ga0070673_101900002	Not Available	564	Open in IMG/M
3300005440\|Ga0070705_100430278	Not Available	985	Open in IMG/M
3300005441\|Ga0070700_101256872	Not Available	620	Open in IMG/M
3300005441\|Ga0070700_101689079	Not Available	543	Open in IMG/M
3300005455\|Ga0070663_100433260	Not Available	1081	Open in IMG/M
3300005456\|Ga0070678_100344962	Not Available	1279	Open in IMG/M
3300005459\|Ga0068867_101744093	Not Available	584	Open in IMG/M
3300005545\|Ga0070695_100928449	Not Available	704	Open in IMG/M
3300005548\|Ga0070665_100926837	Not Available	884	Open in IMG/M
3300005618\|Ga0068864_100366169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1363	Open in IMG/M
3300005719\|Ga0068861_100486767	All Organisms → cellular organisms → Bacteria → Proteobacteria	1112	Open in IMG/M
3300005840\|Ga0068870_10700105	Not Available	699	Open in IMG/M
3300006969\|Ga0075419_10326005	Not Available	1040	Open in IMG/M
3300009098\|Ga0105245_11728883	Not Available	678	Open in IMG/M
3300009098\|Ga0105245_12783413	Not Available	542	Open in IMG/M
3300009156\|Ga0111538_11867513	Not Available	756	Open in IMG/M
3300011119\|Ga0105246_11190727	Not Available	701	Open in IMG/M
3300012901\|Ga0157288_10242780	Not Available	600	Open in IMG/M
3300012902\|Ga0157291_10308452	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300012913\|Ga0157298_10371662	Not Available	534	Open in IMG/M
3300012915\|Ga0157302_10066733	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300012916\|Ga0157310_10258037	Not Available	663	Open in IMG/M
3300013297\|Ga0157378_10564495	Not Available	1145	Open in IMG/M
3300013297\|Ga0157378_11076329	Not Available	840	Open in IMG/M
3300013297\|Ga0157378_12405001	Not Available	579	Open in IMG/M
3300013306\|Ga0163162_11368513	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300013308\|Ga0157375_11371728	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300013308\|Ga0157375_12594560	Not Available	605	Open in IMG/M
3300013308\|Ga0157375_12909701	Not Available	572	Open in IMG/M
3300013308\|Ga0157375_13502684	Not Available	522	Open in IMG/M
3300015373\|Ga0132257_104347035	Not Available	516	Open in IMG/M
3300017792\|Ga0163161_11620502	Not Available	571	Open in IMG/M
3300017965\|Ga0190266_10010827	All Organisms → cellular organisms → Bacteria → Proteobacteria	2330	Open in IMG/M
3300017965\|Ga0190266_11380857	Not Available	500	Open in IMG/M
3300018031\|Ga0184634_10048439	Not Available	1749	Open in IMG/M
3300018067\|Ga0184611_1168574	Not Available	777	Open in IMG/M
3300018073\|Ga0184624_10070349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1456	Open in IMG/M
3300018083\|Ga0184628_10043578	All Organisms → cellular organisms → Bacteria → Proteobacteria	2256	Open in IMG/M
3300018083\|Ga0184628_10097844	Not Available	1508	Open in IMG/M
3300018083\|Ga0184628_10104433	Not Available	1458	Open in IMG/M
3300018083\|Ga0184628_10266022	Not Available	901	Open in IMG/M
3300018476\|Ga0190274_10288947	Not Available	1517	Open in IMG/M
3300018476\|Ga0190274_10831144	Not Available	984	Open in IMG/M
3300018476\|Ga0190274_13143083	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300020034\|Ga0193753_10092936	Not Available	1519	Open in IMG/M
3300021082\|Ga0210380_10018789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	2922	Open in IMG/M
3300021082\|Ga0210380_10368674	Not Available	656	Open in IMG/M
3300021082\|Ga0210380_10441573	Not Available	596	Open in IMG/M
3300021082\|Ga0210380_10517153	Not Available	547	Open in IMG/M
3300022756\|Ga0222622_10055055	All Organisms → cellular organisms → Bacteria → Proteobacteria	2267	Open in IMG/M
3300022756\|Ga0222622_10333111	Not Available	1053	Open in IMG/M
3300025908\|Ga0207643_10336127	Not Available	946	Open in IMG/M
3300025908\|Ga0207643_10980232	Not Available	547	Open in IMG/M
3300025920\|Ga0207649_10613694	Not Available	837	Open in IMG/M
3300025923\|Ga0207681_10028348	All Organisms → cellular organisms → Bacteria → Proteobacteria	3626	Open in IMG/M
3300025923\|Ga0207681_10977236	Not Available	710	Open in IMG/M
3300025925\|Ga0207650_10055963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. RAC05	2930	Open in IMG/M
3300025925\|Ga0207650_10188146	Not Available	1648	Open in IMG/M
3300025925\|Ga0207650_10317572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1275	Open in IMG/M
3300025926\|Ga0207659_10346944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1231	Open in IMG/M
3300025930\|Ga0207701_10172361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1912	Open in IMG/M
3300025930\|Ga0207701_10173530	Not Available	1904	Open in IMG/M
3300025934\|Ga0207686_10207972	Not Available	1405	Open in IMG/M
3300025938\|Ga0207704_10320267	Not Available	1196	Open in IMG/M
3300025938\|Ga0207704_11437435	Not Available	591	Open in IMG/M
3300025972\|Ga0207668_10116333	Not Available	2016	Open in IMG/M
3300026067\|Ga0207678_10900230	Not Available	782	Open in IMG/M
3300026075\|Ga0207708_10334849	All Organisms → cellular organisms → Bacteria → Proteobacteria	1238	Open in IMG/M
3300026088\|Ga0207641_10169308	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S5133MH16	1992	Open in IMG/M
3300026095\|Ga0207676_12402484	Not Available	524	Open in IMG/M
3300026121\|Ga0207683_10453748	Not Available	1182	Open in IMG/M
3300031226\|Ga0307497_10037500	All Organisms → cellular organisms → Bacteria → Proteobacteria	1625	Open in IMG/M
3300031562\|Ga0310886_10217301	Not Available	1052	Open in IMG/M
3300032000\|Ga0310903_10825056	Not Available	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	59.62%
Environmental	Environmental	40.38%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	59.62%
Terrestrial	Environmental → Terrestrial	27.88%
Aquatic	Environmental → Aquatic	12.50%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	41.35%
Soil	Environmental → Terrestrial → Soil	27.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.27%
Sediment	Environmental → Aquatic → Sediment	8.65%
Freshwater	Environmental → Aquatic → Freshwater	3.85%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	28.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.65%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.88%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	28.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.92%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	16.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	9.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_01534800	2199352025	Soil	MMERIDNELECSARELLAYLDTESELEKSLPFIVNIFVXXXRAAVFAKAARTLEPAQRCRIYRHCRG
JGI10214J12806_113654311	3300000891	Soil	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCR
Ga0062593_1013603711	3300004114	Soil	MNNVDNELECRVRELLAYLDTESAVEEASPFTVGFLVEKMRAAVFAKAARTLAPAQTQFPELFISK*
Ga0062594_1007129093	3300005093	Soil	LNEIDNELECRARELIAYHDTELTIEESVPFAVGFLVEKMRAAVFSKTARTLAPAHRCRI
Ga0066811_10053822	3300005185	Soil	MERIDNELECSARELLAYLDTESELEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRC
Ga0065712_103449812	3300005290	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0065712_104777932	3300005290	Miscanthus Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRC
Ga0070676_102772303	3300005328	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQ
Ga0070676_103961591	3300005328	Miscanthus Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAIFAKAARTLEPAQRCRIYRHCRG*
Ga0070690_1002067603	3300005330	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070670_1000823372	3300005331	Switchgrass Rhizosphere	MGSFFFNDNELECRARELLAYPDNEAEIERALPFPVGLIVKEMRAAVFAKAVRTLAPAHRCRIYRNCG*
Ga0070670_1001735453	3300005331	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESELEKSLPFIVNVFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070670_1003792684	3300005331	Switchgrass Rhizosphere	LNEIDNELECRARELIAYHDTELTIEESVPFAVGFLVEKMRAAVFSKTARTLAPAHRCRIYRNCRLS*
Ga0070670_1011979791	3300005331	Switchgrass Rhizosphere	DNELECRARELLAYLHADVEIEESLPFAVGFLIEKMRAAVFAKAARTLAPAHRCRLYRHSSRTAIFK
Ga0070670_1015022402	3300005331	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKDARTLEPAQRCRIYRHCRG*
Ga0070670_1015313422	3300005331	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070677_102684692	3300005333	Miscanthus Rhizosphere	VNVDNELECRARELLAYLDTDLAVEEASPFAVGFLVEKMRAATFAKAARTRAPAHRCRMYRHCRL*
Ga0070677_104879891	3300005333	Miscanthus Rhizosphere	ELECSARELLAYLDTESEIEKTLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRSDAFAHASDRKAQQ*
Ga0068868_1008542921	3300005338	Miscanthus Rhizosphere	RIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKDARTLEPAQRCRIYRHCRG*
Ga0068868_1013671901	3300005338	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRC
Ga0070689_1004361983	3300005340	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESELEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQR
Ga0070692_110492882	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESDIEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRSDAFAHASDRKAQQ*QS
Ga0070668_1007064032	3300005347	Switchgrass Rhizosphere	MDGMNKLDNELECRCRELLAYLDKELAVEESLPFAVGYLVEQMRAAVFAKTVRTLAPAHRCRIYGRCR*
Ga0070669_1003351822	3300005353	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKTLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRSDAFAHASDRKAQQ*
Ga0070669_1006858282	3300005353	Switchgrass Rhizosphere	DKAHLIVNQFDNELECRARELLAYLDNEAEIERALPFPVGLMVKEMRAAVFAKAARTLAPAHRCRIYRRCRV*
Ga0070675_1003908292	3300005354	Miscanthus Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070675_1008862341	3300005354	Miscanthus Rhizosphere	DNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAIFAKAARTLEPAQRCRIYRHCRG*
Ga0070675_1013637202	3300005354	Miscanthus Rhizosphere	MNKLDNELECRARELLAYLDTELAVEESLPFALGFLVEQMRAAVFSKATRTLERAHRCRIYRQCRPWW
Ga0070675_1013818371	3300005354	Miscanthus Rhizosphere	MDTTDNELECRARELLAYLHADVEIEESLPFAVGFLIEKMRAAVFAKAARTLAPAHRCRLYRHSSRTA*
Ga0070674_1012624811	3300005356	Miscanthus Rhizosphere	ELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070673_1019000021	3300005364	Switchgrass Rhizosphere	ELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKDARTLEPAQRCRIYRHCRG*
Ga0070705_1004302782	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MMERIDNELECSARELLAYLDTESEVEKSLPFIVNVLVKKMRAAVFAKDARTLEPAQRCRIYRHCRG*
Ga0070700_1012568722	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SAMMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070700_1016890791	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	EIDNELECRARELIAYHDTELTIEESVPFAVGFLVEKMRAAVFSKTARTLAPAHRCRIYRNCRLS*
Ga0070663_1004332602	3300005455	Corn Rhizosphere	MMERIDNELECSARELLAYLDTESELEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070678_1003449622	3300005456	Miscanthus Rhizosphere	MNNVDNELECRVRELLAYLDTESAVEEASPFTVGFLVEKMRSAVFAKAARTLAPAQTQFPELFISK*
Ga0068867_1017440931	3300005459	Miscanthus Rhizosphere	GSAMMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070695_1009284492	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0070665_1009268373	3300005548	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0068864_1003661692	3300005618	Switchgrass Rhizosphere	LNEIDNELECRARELLAYLHADVEIEESLPFAVGFLIEKMRAAVFAKAARTLAPAHRCRLYRHSSRTA*
Ga0068861_1004867672	3300005719	Switchgrass Rhizosphere	MERIDNELECSARELLAYLDTESEIEKTLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRSDAFAHASDRKAQQ*
Ga0068870_107001052	3300005840	Miscanthus Rhizosphere	VHNVDNELECRARELLAYLDTEPPVEEALPFAIAYQIEKTRAAVFAKATRSLTPAHRCRIYRNCRLS*
Ga0075419_103260051	3300006969	Populus Rhizosphere	MERIDNELECSARELLAYLDTESDIEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0105245_117288832	3300009098	Miscanthus Rhizosphere	VNQIDNELECRARELLANLDTEPAIEESWPFAVSFQVKKFREALFAKTARTLVPAHRCRIYRHCR*
Ga0105245_127834131	3300009098	Miscanthus Rhizosphere	SAMMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKDARTLEPAQRCRIYRHCRG*
Ga0111538_118675132	3300009156	Populus Rhizosphere	MNKLDNHLECRDRELLAYLDTELAVEESLPFALGYLVKQMRAAVFAKTVRVLAPAHRCRIYGHWRHAAIRN*
Ga0105246_111907271	3300011119	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAIFAKAARTLEPAQRCRIYRHCRG*
Ga0157288_102427802	3300012901	Soil	ELECRARELLAYLDTEMAIEKSLPFAVGYLVEQMRAAIFEKKTRTLAPAHRCRIYGRCR*
Ga0157291_103084521	3300012902	Soil	NNVDNELECRVRELLAYLDTESAVEEASPFTVGFLVEKMRAAVFAKAARTLAPAHRCRIYRNCGPYAK*
Ga0157298_103716622	3300012913	Soil	RELLAYLDTELAIEESLPFAVGFLVEKMRAAVFAKAARTLAPAHRCRIYRTCRPQQS*
Ga0157302_100667331	3300012915	Soil	RELLAYLDTESEIEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0157310_102580372	3300012916	Soil	HPMNNVDNELECRVRELLAYLDTESAVEEASPFTVGFLVEKMRAAVFAKAARTLAPAHVLSGLDA*
Ga0157378_105644951	3300013297	Miscanthus Rhizosphere	KADADRRELLAYLDTELEVEESLPFAVRFAIERMRAAVFAKTVRTLAPAHRCRIYGRCR*
Ga0157378_110763291	3300013297	Miscanthus Rhizosphere	VNQIDNELECRARELLANLDTEPAIEESWPFAVSFQVKKFREALFAKTARTLVPAHRCRI
Ga0157378_124050012	3300013297	Miscanthus Rhizosphere	MNEIDNELECRARELIAYHDTELTIEESVPFAVGFLVEKMRAAVFSKTARTLAPAHRCRIYGRCR*
Ga0163162_113685131	3300013306	Switchgrass Rhizosphere	NELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0157375_113717281	3300013308	Miscanthus Rhizosphere	ERIDNELECSARELLAYLDTESELEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0157375_125945602	3300013308	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESELEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG*
Ga0157375_129097013	3300013308	Miscanthus Rhizosphere	DNELECRARELIAYHDTELTIEESVPFAVGFLVEKMRAAVFSKTARTLAPAHRCRIYRNCRLS*
Ga0157375_135026841	3300013308	Miscanthus Rhizosphere	ELLAYLHADVEIEESLPFAVGFLIEKMRAAVFAKAARTLAPAHRCRLYRHSSRTA*
Ga0132257_1043470352	3300015373	Arabidopsis Rhizosphere	RARELLAYLDTELAVEAALPFGVGFLVEQMREAVFAKKAQTFAPAHRCRIYRQCRRLPI*
Ga0163161_116205022	3300017792	Switchgrass Rhizosphere	MERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKDARTLEPAQRCRIYRHCRG
Ga0190266_100108273	3300017965	Soil	MMERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0190266_113808571	3300017965	Soil	MDTTDNELECRARELLAYLHADVEIEESLPFAVGFLIEKMRAAVFAKAARTLAPAHRCRLYRHSSRTA
Ga0184634_100484393	3300018031	Groundwater Sediment	MMERIDNELECSARELLAYLDTESEIEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0184611_11685741	3300018067	Groundwater Sediment	MNNVDNELECRVRELLAYLDTESAVEEASPFTVGFLVEKMRAAVFAKAARTLAPAQTQFPELFISK
Ga0184624_100703492	3300018073	Groundwater Sediment	MNNVDNELECRVRELLAYLDTESAVEEASPFAVGFLVEKMRAAVFAKAARTLAPAQTQFPELFISK
Ga0184628_100435785	3300018083	Groundwater Sediment	MGSFFFNDNELECRARELLAYLDNEAEIERALPFPVGLIVKEMRAAVFAKAVRTLAPAHRCRIYRNCG
Ga0184628_100978442	3300018083	Groundwater Sediment	MERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0184628_101044332	3300018083	Groundwater Sediment	MDQLDNELECRARELLAYLDTELAVEEALPFAVGFLVEKMRAGVFAKATRTLAPAHRCWIYRNCRLS
Ga0184628_102660222	3300018083	Groundwater Sediment	MERIDNELECSARELLAYLDTESEIEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0190274_102889473	3300018476	Soil	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0190274_108311442	3300018476	Soil	SAMMERIDNELECSARELLAYLDTESELEKSLPFIVNVFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0190274_131430831	3300018476	Soil	MIIDNELECRARELLAYLDTDLAIEESLPFAVRFLLEKMRAAVFVKATRTLAPAHRCRIYRNWPHKFCEIEG
Ga0193753_100929363	3300020034	Soil	MDQLNNELECRAREVLAYLDTEAAIEDSLPFAVSFMVARMRAAVFAKTARTLAPARRCRIYGRCRP
Ga0210380_100187893	3300021082	Groundwater Sediment	MDQIDNELECRARELLAYLDTELAIEESLPFAVGFLVEQMRAAVFAKAARSLAPVHRCRIYRNCRPQQA
Ga0210380_103686742	3300021082	Groundwater Sediment	VNVDSELEFRARELLAYLDTDLAVEESLPFTVGFLVEKKRSAVFARSACTIAASLRCRLYFPNFTFRIDKN
Ga0210380_104415731	3300021082	Groundwater Sediment	GRVVNNVDNELERRARELLAYLDTDLAVEESLPFAVGFLVENMRAAVFAKVARTLAPAHRCRIYRHCRP
Ga0210380_105171532	3300021082	Groundwater Sediment	ELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAVFAKAARTLEPGQRCRIYRTAADKLFCCE
Ga0222622_100550551	3300022756	Groundwater Sediment	MNSIDNELECRARELLAYLDTELAIEESLPFAIGFLVEKMRAAVFAKAARTLAPAHRCRIYRHCRQ
Ga0222622_103331112	3300022756	Groundwater Sediment	MNNVDNELECRVRELLAYLDTESAVEEASPFTVGFLVEKMRAAVFAKAARTLAPAQTQFP
Ga0207643_103361272	3300025908	Miscanthus Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0207643_109802322	3300025908	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRI
Ga0207649_106136941	3300025920	Corn Rhizosphere	MMERIDNELECSARELLAYLDTESEVEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0207681_100283488	3300025923	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKTLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRSDAFAHASDRKAQQ
Ga0207681_109772361	3300025923	Switchgrass Rhizosphere	MMDRIDNALECSARELLAYLDTESELEKSLPFIVNVFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0207650_100559632	3300025925	Switchgrass Rhizosphere	MGSFFFNDNELECRARELLAYPDNEAEIERALPFPVGLIVKEMRAAVFAKAVRTLAPAHRCRIYRNCG
Ga0207650_101881463	3300025925	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESELEKSLPFIVNVFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0207650_103175723	3300025925	Switchgrass Rhizosphere	LNEIDNELECRARELIAYHDTELTIEESVPFAVGFLVEKMRAAVFSKTARTLAPAHRCRIYRNCRLS
Ga0207659_103469441	3300025926	Miscanthus Rhizosphere	MNKLDNELECRARELLAYLDTELAVEESLPFALGFLVEQMRAAVFSKATRTLERAHRCRIYRQCRPWWH
Ga0207701_101723614	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VNVDNELECRARELLAYLDTDLAVEEASPFAVGFLVEKMRAATFAKAARTRAPAHRCRMYRHCRL
Ga0207701_101735302	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAIFAKAARTLEPAQRCRIYRHCRG
Ga0207686_102079722	3300025934	Miscanthus Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKDARTLEPAQRCRIYRHCRG
Ga0207704_103202673	3300025938	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0207704_114374351	3300025938	Miscanthus Rhizosphere	MERIDNELECSARELLAYLDTESEIEKTLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRSDAFAHASDRKAQQ
Ga0207668_101163333	3300025972	Switchgrass Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKSLPFIVNIFVKKMRAAIFAKAARTLEPAQRCRIYRHCRG
Ga0207678_109002301	3300026067	Corn Rhizosphere	MMERIDNELECSARELLAYLDTESEIEKTLPFIVNVLVKRMRAAVFAKAARTLEPAQ
Ga0207708_103348492	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VNQINNELECRARELLAYLDTDLAVEESLPFAVGFLVEKMRAAVFAKAARTLAPAHVLSGLDA
Ga0207641_101693083	3300026088	Switchgrass Rhizosphere	MERIDNELECSARELLAYLDTESELEKSLPFIVNIFVKKMRAAVFAKAARTLEPAQRCRIYRH
Ga0207676_124024841	3300026095	Switchgrass Rhizosphere	MERIDNELECSARELLAYLDTESEIEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRSDAFA
Ga0207683_104537482	3300026121	Miscanthus Rhizosphere	MNNVDNELECRVRELLAYLDTESAVEEASPFTVGFLVEKMRSAVFAKAARTLAPAQTQFPELFISK
Ga0307497_100375002	3300031226	Soil	MMERIDNELECSARELLAYLDTESELEKNLPFIVNVLVKRMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0310886_102173013	3300031562	Soil	MERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG
Ga0310903_108250561	3300032000	Soil	SSIERVGAVFKWGGAMMERIDNELECSARELLAYLDTESEIEKSLPFIVNVLVKKMRAAVFAKAARTLEPAQRCRIYRHCRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096725

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences