NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096633

Metagenome / Metatranscriptome Family F096633

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096633
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 64 residues
Representative Sequence NRQAKGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGVTIAFVVGIAWMRTSTHRVRGKEEGQHGLR
Number of Associated Samples 60
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 30.00 %
% of genes near scaffold ends (potentially truncated) 50.96 %
% of genes from short scaffolds (< 2000 bps) 77.88 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (82.692 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(32.692 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(39.423 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 65.96%    β-sheet: 0.00%    Coil/Unstructured: 34.04%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF04972BON 50.00
PF14346DUF4398 12.50
PF02954HTH_8 3.85
PF00069Pkinase 1.92
PF14403CP_ATPgrasp_2 0.96
PF01872RibD_C 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 7.69
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.96
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A82.69 %
All OrganismsrootAll Organisms17.31 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003308|Ga0006777J48905_1050836Not Available545Open in IMG/M
3300003320|rootH2_10014030All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum8827Open in IMG/M
3300003693|Ga0032354_1043938Not Available625Open in IMG/M
3300003693|Ga0032354_1100739Not Available552Open in IMG/M
3300003693|Ga0032354_1103650Not Available735Open in IMG/M
3300004153|Ga0063455_101680172Not Available503Open in IMG/M
3300005333|Ga0070677_10021562All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum2365Open in IMG/M
3300005337|Ga0070682_100008276All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum5864Open in IMG/M
3300005337|Ga0070682_100071896All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae2215Open in IMG/M
3300005547|Ga0070693_100841420Not Available683Open in IMG/M
3300005993|Ga0080027_10140740Not Available922Open in IMG/M
3300007819|Ga0104322_103846Not Available1036Open in IMG/M
3300009695|Ga0123337_10087319Not Available1932Open in IMG/M
3300010152|Ga0126318_10398699Not Available669Open in IMG/M
3300010375|Ga0105239_12683893Not Available581Open in IMG/M
3300012212|Ga0150985_103459540Not Available841Open in IMG/M
3300012212|Ga0150985_107683203Not Available543Open in IMG/M
3300012212|Ga0150985_110559314Not Available740Open in IMG/M
3300012212|Ga0150985_111505071Not Available1244Open in IMG/M
3300012212|Ga0150985_111514724Not Available526Open in IMG/M
3300012212|Ga0150985_111831382Not Available541Open in IMG/M
3300012212|Ga0150985_112222942Not Available627Open in IMG/M
3300012212|Ga0150985_112592626Not Available666Open in IMG/M
3300012212|Ga0150985_114893819Not Available547Open in IMG/M
3300012212|Ga0150985_121405379Not Available522Open in IMG/M
3300012469|Ga0150984_105638599All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2745Open in IMG/M
3300012469|Ga0150984_106310369Not Available762Open in IMG/M
3300012469|Ga0150984_109714538Not Available517Open in IMG/M
3300012469|Ga0150984_109891949Not Available569Open in IMG/M
3300012469|Ga0150984_110449709Not Available1841Open in IMG/M
3300012469|Ga0150984_111603174Not Available593Open in IMG/M
3300012469|Ga0150984_112214646Not Available587Open in IMG/M
3300012469|Ga0150984_113965793Not Available625Open in IMG/M
3300012469|Ga0150984_114257050Not Available697Open in IMG/M
3300012469|Ga0150984_116510726Not Available845Open in IMG/M
3300012469|Ga0150984_116742704Not Available706Open in IMG/M
3300012469|Ga0150984_120824365Not Available586Open in IMG/M
3300012469|Ga0150984_123473040Not Available895Open in IMG/M
3300012891|Ga0157305_10040290Not Available956Open in IMG/M
3300012895|Ga0157309_10007821All Organisms → cellular organisms → Bacteria → Proteobacteria2077Open in IMG/M
3300012895|Ga0157309_10058095Not Available978Open in IMG/M
3300012899|Ga0157299_10234293Not Available573Open in IMG/M
3300012929|Ga0137404_10596027Not Available993Open in IMG/M
3300012930|Ga0137407_11895443Not Available568Open in IMG/M
3300012984|Ga0164309_10000182All Organisms → cellular organisms → Bacteria → Proteobacteria38592Open in IMG/M
3300012984|Ga0164309_10001240All Organisms → cellular organisms → Bacteria → Proteobacteria12708Open in IMG/M
3300012985|Ga0164308_10000004All Organisms → cellular organisms → Bacteria → Proteobacteria118347Open in IMG/M
3300012988|Ga0164306_10032160All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3025Open in IMG/M
3300012988|Ga0164306_11107803Not Available659Open in IMG/M
3300014969|Ga0157376_10148904Not Available2109Open in IMG/M
3300014969|Ga0157376_10988466Not Available863Open in IMG/M
3300015242|Ga0137412_10744877Not Available725Open in IMG/M
3300015264|Ga0137403_10958988Not Available703Open in IMG/M
3300018481|Ga0190271_12263866Not Available649Open in IMG/M
3300021475|Ga0210392_10001158All Organisms → cellular organisms → Bacteria → Proteobacteria14189Open in IMG/M
3300022523|Ga0242663_1131790Not Available524Open in IMG/M
3300022530|Ga0242658_1228115Not Available518Open in IMG/M
3300022891|Ga0247770_1190818Not Available624Open in IMG/M
3300022894|Ga0247778_1000148All Organisms → cellular organisms → Bacteria121748Open in IMG/M
3300022894|Ga0247778_1090215Not Available807Open in IMG/M
3300022894|Ga0247778_1104708Not Available754Open in IMG/M
3300022903|Ga0247774_1139438Not Available573Open in IMG/M
3300022908|Ga0247779_1084898Not Available827Open in IMG/M
3300022911|Ga0247783_1003348All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales5086Open in IMG/M
3300022911|Ga0247783_1060457Not Available1004Open in IMG/M
3300023070|Ga0247755_1001805All Organisms → cellular organisms → Bacteria2945Open in IMG/M
3300023267|Ga0247771_1033227Not Available1583Open in IMG/M
3300023269|Ga0247773_1021107Not Available2196Open in IMG/M
3300023272|Ga0247760_1000356All Organisms → cellular organisms → Bacteria → Proteobacteria50798Open in IMG/M
3300027031|Ga0208986_1031335Not Available570Open in IMG/M
3300028652|Ga0302166_10041038Not Available953Open in IMG/M
3300028665|Ga0302160_10020576Not Available1210Open in IMG/M
3300028777|Ga0302290_10111018Not Available709Open in IMG/M
3300029984|Ga0311332_10030713All Organisms → cellular organisms → Bacteria3677Open in IMG/M
3300029987|Ga0311334_10403835Not Available1085Open in IMG/M
3300029987|Ga0311334_11096351All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300030114|Ga0311333_11117345Not Available671Open in IMG/M
3300030905|Ga0308200_1047819Not Available792Open in IMG/M
3300031058|Ga0308189_10314685Not Available617Open in IMG/M
3300031058|Ga0308189_10316072Not Available616Open in IMG/M
3300031058|Ga0308189_10317589Not Available615Open in IMG/M
3300031058|Ga0308189_10482759Not Available531Open in IMG/M
3300031058|Ga0308189_10495867Not Available525Open in IMG/M
3300031082|Ga0308192_1031875Not Available733Open in IMG/M
3300031096|Ga0308193_1072949Not Available552Open in IMG/M
3300031123|Ga0308195_1021642Not Available793Open in IMG/M
3300031123|Ga0308195_1029826Not Available714Open in IMG/M
3300031123|Ga0308195_1041266Not Available642Open in IMG/M
3300031123|Ga0308195_1043404Not Available632Open in IMG/M
3300031123|Ga0308195_1047513Not Available614Open in IMG/M
3300031123|Ga0308195_1064268Not Available557Open in IMG/M
3300031128|Ga0170823_17543734Not Available570Open in IMG/M
3300031231|Ga0170824_121051294Not Available552Open in IMG/M
3300031456|Ga0307513_10112897All Organisms → cellular organisms → Bacteria → Proteobacteria2706Open in IMG/M
3300031456|Ga0307513_10479443Not Available964Open in IMG/M
3300031726|Ga0302321_102779050Not Available572Open in IMG/M
3300031938|Ga0308175_100359832Not Available1507Open in IMG/M
3300032144|Ga0315910_10673558Not Available803Open in IMG/M
3300032157|Ga0315912_11572238Not Available517Open in IMG/M
3300034268|Ga0372943_1161819Not Available516Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil25.00%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere16.35%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter13.46%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere11.54%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen7.69%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.85%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.92%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.92%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza1.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.92%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.96%
Glacier ValleyEnvironmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley0.96%
Permafrost SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.96%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.96%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.96%
Sugarcane Root And Bulk SoilHost-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil0.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003308Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only)Host-AssociatedOpen in IMG/M
3300003320Sugarcane root Sample H2Host-AssociatedOpen in IMG/M
3300003693Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300007819Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009695Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - frozenSSSS metaGEnvironmentalOpen in IMG/M
3300010152Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012891Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2EnvironmentalOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300022523Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022891Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L136-409B-6EnvironmentalOpen in IMG/M
3300022894Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5EnvironmentalOpen in IMG/M
3300022897Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L051-202B-4EnvironmentalOpen in IMG/M
3300022903Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6EnvironmentalOpen in IMG/M
3300022908Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5EnvironmentalOpen in IMG/M
3300022911Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L064-202C-5EnvironmentalOpen in IMG/M
3300023070Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L096-311B-4EnvironmentalOpen in IMG/M
3300023265Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L079-202R-5EnvironmentalOpen in IMG/M
3300023267Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L197-509C-6EnvironmentalOpen in IMG/M
3300023269Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6EnvironmentalOpen in IMG/M
3300023272Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L171-409R-4EnvironmentalOpen in IMG/M
3300027031Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028652Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3EnvironmentalOpen in IMG/M
3300028665Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3EnvironmentalOpen in IMG/M
3300028777Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_3EnvironmentalOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029987I_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030905Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031082Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031096Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031123Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031456Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EMHost-AssociatedOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0006777J48905_105083623300003308Avena Fatua RhizosphereQALGAVIALAFVAAFIASVAFHSVVAAVSVLLSGVTVAFIVGIAWMRTAPSRVGTKRDNQHSLP*
rootH2_1001403083300003320Sugarcane Root And Bulk SoilMVFVAAFIVSVAFHSVVAAVSVLLSGITVAFVVGIAWMRTAPQRVAKRQNQHSLP*
Ga0032354_104393823300003693Avena Fatua RhizosphereVASIVLHSVVAAVIVLLSGVTVAYITGIAWMRTAAGPNRVREKQRSLP*
Ga0032354_110073923300003693Avena Fatua RhizosphereIAPLELMKRQALGAVIALAFVAAFIASVAFHSVVAAVSVLLSGVTVAFIVGIAWMRTAPSRVGTKRDNQHSLP*
Ga0032354_110365023300003693Avena Fatua RhizosphereKWRPPKVARGLLYRGLMNRQAKGAAIAMVFVAAFIASVAFHSVVAAVCVLLSGVTVAFVVGIAWMRTAPDRVRGKRQSQQSLP*
Ga0063455_10168017213300004153SoilMDCSVQLMNRQAKGAAIALALVAAFIASIAFHSIVAAVIVLLSGITIAYVVGIAWMRTSTHRVRGKEGEQGLR*
Ga0070677_1002156253300005333Miscanthus RhizosphereMDCSVELMNRQAKGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGVTIAFVVGIAWMRTSTHRVRGKEEGQHGLR*
Ga0070682_10000827673300005337Corn RhizosphereMNRQAKGAAIALTFVAAFIASIAFHSVVAAVAVLLTGITVAFVIGIAWMRTSPHGVRGKQRDQHSLP*
Ga0070682_10007189623300005337Corn RhizosphereMNRQAKGAAIALAFVAAFVASLVFHSFVAAVIVLLSGVTVAYVVGIAWMRTSTHRVRGK*
Ga0070693_10084142023300005547Corn, Switchgrass And Miscanthus RhizosphereMAFVAAFIASIAFHSVVAAVCVLLSGITVAFVVGIAWMRTASNRVPEKRQNQHSLP*
Ga0080027_1014074023300005993Prmafrost SoilMNHQVKGALIAFAFIAAFIASVALHSVVASVIVLLSGITVAYVTGIAWMRTSSGTNRVRGKQRSLP*
Ga0104322_10384613300007819Permafrost SoilMTRQWKGAALAVAFVAAFVISIAFHSVVAAVTVLLSAVTVSYVIGIAWMRTSTHRERDKPQSLP*
Ga0123337_1008731933300009695Glacier ValleyMTRQLKGALIAFAFIAAFIASIALHSLVASVIVLLSFVTVAYVIGIAWMRTSTHRVRSKEQSQP*
Ga0126318_1039869923300010152SoilAMSFVAAFIVSIVFHSLVAAVIVLLSAISVSYVIGIAWMRTNTHRTKGKQQSLP*
Ga0105239_1268389313300010375Corn RhizosphereSIADVMTMNRQFKGALIAFAFVAAFIASIALHSVIASVIVLLSGVTVAYVVGIAWMRTSTHRVRGKQQSLP*
Ga0150985_10249627723300012212Avena Fatua RhizosphereASVVFHSVVAAITVLLSGITVAFIVGIAWMRTAPSRVDTKRANQHGLP*
Ga0150985_10345954023300012212Avena Fatua RhizosphereMDCSVQLMNRQAKGAAIALAFVAAFIASIAFHSIVAAVIVLLSGITIAYVVGIAWMRTSPHRVRGKEGQQGLR*
Ga0150985_10768320313300012212Avena Fatua RhizosphereQALGALIAMAFVAAFIVSVAFHSVVAAISVLLSGVTVAFIVGIAWMRTAPSRVGNKRENQHSLP*
Ga0150985_11055931413300012212Avena Fatua RhizosphereMNRQVKGAAIALTFVAAFIASMALHSVVAAVCVLLSGITVAYVIGIAWMRTSPHGVRGKQRDEHGLP*
Ga0150985_11150507113300012212Avena Fatua RhizosphereRQAIGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGITIAYVVGIAWMRTAPNRMREKPKSQHGLQ*
Ga0150985_11151472423300012212Avena Fatua RhizosphereGAVIAMGFVAAFIASIVLHSVTAAVIVLLSGVTVAFVVGIAWMRTSPQQVRTKRQSQQSLP*
Ga0150985_11183138213300012212Avena Fatua RhizosphereKGAIIAIAFVAAFIASIALHSIVASVIVLLSGVTVAYITGIAWMRTSTHRVRGKQP*
Ga0150985_11195062313300012212Avena Fatua RhizosphereTSIAFHSVVAAVSVAFSGITIAFIVGIAWMRTAPDRVRGKREDQHSLP*
Ga0150985_11222294213300012212Avena Fatua RhizosphereIGIAFVAAFIASIALHSVVASVIVLLSGVTVAFITGIAWMRTSGGPNRVRDKQRSLP*
Ga0150985_11259262623300012212Avena Fatua RhizosphereVIALVFVAAFIASIAFHSVVAALVVLLSGITIAFVVGIAWMRTSPHGVRGKQN*
Ga0150985_11489381923300012212Avena Fatua RhizosphereRQAKGAAIAITFVAAFIASMALHSVVASVIVLLSGITVAYVVGIAWMRTSPHGVRGKQRDQHGLP*
Ga0150985_12140537913300012212Avena Fatua RhizosphereIAMAFVAAFIASVVFHSVVAAVTVLLSGITVAFIVGIAWMRTAPARVDTKRANQHSLP*
Ga0150984_10563859953300012469Avena Fatua RhizosphereAIGIWIAEEKLMNRQVKGAAIALTFVAAFIASMALHSVVAAVCVLLSGITVAYVIGIAWMRTSPHGVRGKQRDEHGLP*
Ga0150984_10631036913300012469Avena Fatua RhizosphereMGFVAAFIASIALHSVVAAVSVLLSGVTVAFVVGIAWMRTSPQRIRSKRENQHSLP*
Ga0150984_10971453823300012469Avena Fatua RhizosphereALIAMAFVAAFIASVVFHSVVAAVTVLLSGITVAFIVGIAWMRTAPARVDTKRANQHSLP
Ga0150984_10989194913300012469Avena Fatua RhizosphereMARQTLGAVIAFAFVAAFIASIAFHSVVASVIVLLSAITVAYIVGIAWMRTSTQRTRGKQGQNSVP*
Ga0150984_11044970923300012469Avena Fatua RhizosphereLSFVAAFIVSIVFHSVVGAVIVLLSAISVSYVIGIAWMRTNTHRTRDKHQSLP*
Ga0150984_11160317413300012469Avena Fatua RhizosphereMTRQAIGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGITIAYVVGIAWMRTAPNRMREKPKSQHGLQ*
Ga0150984_11221464613300012469Avena Fatua RhizospherePIHVMKRQALGALIAMAFVAAFIASVVFHSVVAAITVLLSGITVAFIVGIAWMRTAPSRVDTKRANQHGLP*
Ga0150984_11396579313300012469Avena Fatua RhizospherePKHRMSRQLKGALLALSFVAAFIVSIVFHSVVGAVIVLLSAISVSYVIGIAWMRTNTHRNRGKQQSLP*
Ga0150984_11425705013300012469Avena Fatua RhizosphereIAFAFVAAFIASIAFHSVVASVIVLLSGVTIAFVVGIAWMRTSTNRVPTKEEGQHGLR*
Ga0150984_11651072613300012469Avena Fatua RhizosphereMNHQAKGAIIGILFVAAFITSIALHSVVASVIVLLSGVTVAYITGIAWMRTSPHRVRGKEATGKGGAP*
Ga0150984_11674270423300012469Avena Fatua RhizosphereMKRQALGALIAMAFVAAFIVSVAFHSVVAAISVLLSGVTVAFIVGIAWMRTAPSRVGNKRENQHSLP*
Ga0150984_12082436513300012469Avena Fatua RhizosphereRQAKGAVIALVFVAAFIASIAFHSVVAALVVLLSGITIAFVVGIAWMRTSPHGVRGKQN*
Ga0150984_12347304033300012469Avena Fatua RhizosphereLALIGIAFVAAFIASIALHSVVASVIVLLSGVTVAFITGIAWMRTSGGPNRVRDKQRSLP
Ga0157305_1004029023300012891SoilVQLLARGLLNVLIMNRQAKGAVIALAFVAAFIASIALHSVVAGVIVLLSGVTVAFVVGIAWMRTSPQRVRGKQS*
Ga0157309_1000782123300012895SoilVQLLARGLLNVLIMNRQAKGAVIALAFVAAFIASIAFHSVVAGVIVLLSGVTVAFVVGIAWMRTSPQRVRGKQS*
Ga0157309_1005809523300012895SoilMKRQAQGALIALLFVAAFITSIAFHSVIAAVIVVLSGITVAYVIGIAWMRTAPSRVRSKRESQHGLP*
Ga0157299_1023429313300012899SoilMKRQALGAVIAMAFVAAFIASVAFHSVVAAISVLLSGVTVAFIVGIAWMRTAPPRVGTKR
Ga0137404_1059602713300012929Vadose Zone SoilMTRQWKGAALALVFVAAFVASIALHSVVGAVIVLLTTVTVSYVIGIAWMRTSTHRERDKPHSLP*
Ga0137407_1189544323300012930Vadose Zone SoilAPALAFVAAFIASVALHSVVAAVAVLLSAITVSYVVGIAWMRTSTHRVQGKRGSLP*
Ga0164309_10000182333300012984SoilMNRQAKGAAIAMLFVAAFIASIAFHSVVASVIVLLSGATVAFVVGIAWMRTAPPRVGSKRQSQHGLP*
Ga0164309_1000124083300012984SoilMKRQAIGAAIALVFVAAFIASIAFHSVVASVTVLLSGVTVAYIIGIAWMRTAPGRVREKRENQHSLP*
Ga0164308_10000004473300012985SoilMNRQAKGAAIAMAFVAAFIASIAFHSVVAAVCVLLSGITVAFVVGIAWMRTASNRVPEKRQNQHSLP*
Ga0164306_1003216053300012988SoilMNRQAKGAAIAMAFVAAFIASIAFHSVVAAVIVLLSGVTIAFVMGIAWMRTAPPRVGSKRQSQHGLP*
Ga0164306_1110780313300012988SoilEVRMNRQAKGAAIAMAFVAAFIASIAFHSVVAAVCVLLSGITVAFVVGIAWMRTASNRVPEKRQNQHSLP*
Ga0157376_1014890433300014969Miscanthus RhizosphereMNHQAKGAAIALAFVAAFIASIAFHSVVAAVIVLLSGVTIAYVVGIAWMRTSTHRVRGKQEGQHGLR*
Ga0157376_1098846633300014969Miscanthus RhizosphereMNRQIKGAAIALTFVAAFIASMALHSVVAALVVLLSGVTVAYVVGIAWMRTSPHGGRSKPRDQ
Ga0137412_1074487713300015242Vadose Zone SoilGLLKQGLMNHQGKGAIISIAFVAAFIASIALHSVVASVIVLLSGVTVAYVTGIAWMRTSTHRVRGKQRSLP*
Ga0137403_1095898813300015264Vadose Zone SoilVAESSNMTRQWKGAALALAFVAAFMVSIAFHSVVAAVVVLLSAVTISYVVGIAWMRTSTHRVRPKHHHQIPR*
Ga0190271_1226386613300018481SoilKGAVITFAFVAAFIASIAFHSVVASVIVLLSGVTVAFVVGIAWMRTSPHRVRGKQS
Ga0210392_1000115873300021475SoilLAVAFVAAFVTSIAFHSVVAAVSVLLLAVTVSYVVGIAWMRTSTHRVRDKQSLP
Ga0242663_113179023300022523SoilATIALAFVAAFIVSVAFHSVVASVSVLLTGITIAFVVGIAWMRTAPNRVRDKRQSQHSLP
Ga0242658_122811523300022530SoilAALAVAFVAAFVTSIAFHSVVAAVSVLLLAVTVSYVVGIAWMRTSTHRVRDKQSLP
Ga0247770_119081813300022891Plant LitterNRQAKGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGVTIAFVVGIAWMRTSTHRVRGKEEGQHGLR
Ga0247778_1000148103300022894Plant LitterMTRQALGATIALAFVAAFIASVAFHSVVAAVSVLLVGVTVAFVVGIAWMRTAPNRVRGKRESQHGLP
Ga0247778_109021513300022894Plant LitterMNRQVKGAAIAFVFVAAFIASIAFHSVIAAVIVLLSGITVAYVVGIAWMRTSTHRVRGKEQSQLP
Ga0247778_110470823300022894Plant LitterVQLLARGLLNVLIMNRQAKGAVIALAFVAAFIASIAFHSVVAGVIVLLSGVTVAFVVGIAWMRTSPQRVRGKQS
Ga0247764_116569213300022897Plant LitterIAFHSLIASVIVLLSGVTVAFVVGIAWMRTAQHRVRAKRESQHGLP
Ga0247774_113943823300022903Plant LitterMKRQAQGALIALLFVAAFITSIAFHSVIAAVIVVLSGITVAYVIGIAWMRTAPSRVRSKRESQHGLP
Ga0247779_108489813300022908Plant LitterMNRQAKGAAIAITFVAAFIASMALHSVVAAVVVLLSGITVAFVVGIAWMRTSPHGVRGKQRDQHGLP
Ga0247783_100334843300022911Plant LitterMDCSVELMNRQAKGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGVTIAFVVGIAWMRTSTHRVRGKEEGQHGLR
Ga0247783_106045713300022911Plant LitterMLFVAAFIASVAFHSVVAAVTVLLSAVTVAFIVGIAWMRTAPDRVRGKRQNQ
Ga0247755_100180513300023070Plant LitterMKRQAQGALIALLFVAAFITSIAFHSVIAAVIVVLSGITVAYVIGIAWMRTAPSRVRSKRESQHG
Ga0247780_100246313300023265Plant LitterHSVVAAVSVLLVGVTVAFVVGIAWMRTAPNRVRGKRESQHGLP
Ga0247771_103322743300023267Plant LitterMNRQAKGAAIAFAFVAAFIASVAFHSVVAAVIVLLAGVTVAYVVGIAWMRTATHRVRAKRQSQHSLP
Ga0247773_102110743300023269Plant LitterMTRQTLGAAIAIAFVAAFIASIAFHSVVASVIVLLSAVTVAYIVGIAWMRTSTHRTRGKQEGQNSAP
Ga0247760_100035643300023272Plant LitterMNRQAKGAAIALAFVAAFITSIAFHSVVASVIVLLSAVTVAFVVGIAWMRTSTHRVRAKEQGQNGV
Ga0208986_103133513300027031Forest SoilMNRQWKGAALAICFVAAFVASIAFHSIVAAVIVLLSAISVTYVISIAWMRTSTHRERGKQQSLR
Ga0302166_1004103833300028652FenMNRQAKGAAIAFVFVAAFVASVAFHSVVASVIVLLTGITVAYVVGIAWMRTSTHRVREKEVKHPGLP
Ga0302160_1002057613300028665FenGAALALLFVAAFIASVAFHSVVAAVIVLLSGITIAYVVGIAWMRTSTHRARGKEQDQHGL
Ga0302290_1011101813300028777FenNRQAKGAALALLFVAAFIASVAFHSVVAAVIVLLSGITIAYVVGIAWMRTSTHRARGKEQDQHGLP
Ga0311332_1003071323300029984FenMNRQAKGAALALLFVAAFIASVAFHSVVAAVIVLLSGITIAYVVGIAWMRTSTHRARGKEQDQHGLP
Ga0311334_1040383513300029987FenMKRQAKGALIAFVFVAAFVASVAFHSVVASVIVLLTGITVAYVVGIAWMRTSTHRVGEKE
Ga0311334_1109635113300029987FenMNHQAKGAALSIAFVAAFVVSLMLHSMVAAVSVLFIGVTVATVLGIAWMRTSTHRIKEQRRHS
Ga0311333_1111734523300030114FenMKRQAKGALIAFVFVAAFVASVAFHSVVASVIVLLTGITVAYVVGIAWMRTSTHRVGEKEVKHPGLP
Ga0308200_104781913300030905SoilMNHQAKGALIAFAFVAAFIASIALHSVVASVIVLLCGVTVAFVVGIAWMRTSSGPNRVRDKRRSVP
Ga0308189_1031468513300031058SoilIAVVFVAAFIASIALHSVVASVVVLLSGVTVAYVTGIAWMRTSGGPNRIRDKQRSVP
Ga0308189_1031607213300031058SoilGALIAFAFVAAFIASIALHSVVASVIVLLCGVTVAFVVGIAWMRTSSGPNRVRDKRRSVP
Ga0308189_1031758913300031058SoilKGAAIALAFVAAFIASVAFHSVVAAVIVLLSAITVAYVVGIAWMRTSPNRARTKPQDQHGLP
Ga0308189_1048275923300031058SoilAKGAAIAFAFVAAFIASVAFHSVVAAVIVLLSAITIAYVIGIAWMRTSTHRTRNKQEGQHGVP
Ga0308189_1049586713300031058SoilSFMKRQAIGALIAVAFVAAFIASIAFHSVVATVIVLFSGITVAYIVGIAWMRTSTHRVRDKQPGEKGAS
Ga0308192_103187513300031082SoilKGAAIAITFVAAFIASMALHSVVAAVVVLLSGITVAFVVGIAWMRTSPHGVRGKQRDQHGLP
Ga0308193_107294913300031096SoilMTRQAKGAAIAFAFVAAFIASVVFHSVVAAVIVLLSAITIAYVVGIAWMRTSTHRARSKQEGQHGLP
Ga0308195_102164223300031123SoilIAFAFVAAFIASIALHSVVASVIVLLCGVTVAFVVGIAWMRTSSGPNRVRDKRRSVP
Ga0308195_102982623300031123SoilMNRQAKGAAIALAFVAAFVASLVFHSFVAAVIVLLSGVTVAYVVGIAWMRTSTHRVRGK
Ga0308195_104126623300031123SoilAKGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGVTIAFVVGIAWMRTSTHRVRGKEEGQHGLR
Ga0308195_104340413300031123SoilKGAAIALTFVAAFIASMALHSVVAAVVVLLSGITVAYVVGIAWMRTSPHGVRGKQRDQHGLP
Ga0308195_104751313300031123SoilSVLTRQAKGAAIAFAFVAAFIASVAFHSVVAAVIVLLSAITIAYVIGIAWMRTSTHRTRNKQEGQHGVP
Ga0308195_106426823300031123SoilAKGAAIAFAFVAAFIASVVFHSVVAAVIVLLSAITIAYVVGIAWMRTSTHRARSKQEGQHGLP
Ga0170823_1754373423300031128Forest SoilMSIAQSLIMTRQWKGAALAIAFVAAFVISIAFHSVIAAVTVLLSAVTVSYVIGIAWMRTSTHRERDKPHSLP
Ga0170824_12105129423300031231Forest SoilSCLARQWKGAALAIAFVAAFVISIAFHSVIAAVTVLLSAVTVSYVIGIAWMRTSTHRERDKPHSLP
Ga0307513_1011289753300031456EctomycorrhizaMNRQAKGAALALALVIAFVTSLALHSAVAAVGVLLVAITLTYVISIAWMPTKTHRVRGKQHSLP
Ga0307513_1047944333300031456EctomycorrhizaMNRQAKGAALAFAFVAAFITSVVLHSVVAAVIVLLSGITVAYIVGIAWMRTSTHRIRSKQRSLP
Ga0302321_10277905023300031726FenMTHQAKGALIAFAFVAAFIASIALHSLVASVAVLLSGATVAYVTGIAWMRTSSGPNRIRAKQRSLP
Ga0308175_10035983213300031938SoilMSRQFKGAAIAFAFVAAFIASIAFHSVVAAVIVLLSGITIAYVVGIAWMRTSTHRVRNKEQSQHSLP
Ga0315910_1067355823300032144SoilMKRQTIGAAIALVFIAAFIASIAFHSVVASICVLLSGVTVAFILGIAFMRTAPDRVRDKRQNQHSLP
Ga0315912_1157223813300032157SoilAFIASIAFHSVVASICVLLSGVTVAFILGIAFMRTAPDRVRDKRQNQHSLP
Ga0372943_1161819_110_3043300034268SoilMTRQWKGAALAIAFVAAFVASIAFHSLVASVIVLMSAVTVSYVIGIAWMRTSAQRGRSKQHSLP


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